López-Arredondo DL, Leyva-González MA, González-Morales SI, López-Bucio J, Herrera-Estrella L. Phosphate nutrition: improving low-phosphate tolerance in crops. Annu Rev Plant Biol. 2014;65:95–123.
Kochian LV. Rooting for more phosphorus. Nature. 2012;488:466–7.
Lu CQ, Tian HQ. Global nitrogen and phosphorus fertilizer use foragriculture production in the past half century: shifted hot spots and nutrient imbalance. Earth Syst Sci Data. 2017;9:181–92.
Hinsinger P. Bioavailability of soil inorganic P in the rhizosphere as affected by root-induced chemical changes a review. Plant Soil. 2001;237:173–95.
Holford ICR. Soil phosphorus: its measurement, and its uptake by plants. Aust J Soil Res. 1997;35:227–39.
Wang XR, Shen JB, Liao H. Acquisition or utilization, which is more critical for enhancing phosphorus efficiency in modern crops? Plant Sci. 2010;179:302–6.
Zheng H, Pan X, Deng Y, Wu H, Liu P, Li X. AtOPR3 specifically inhibits primary root growth in Arabidopsis under phosphate deficiency. Sci Rep. 2016;6:24778.
Liang C, Pineros MA, Tian J, Yao Z, Sun L, Liu J, Shaff J, Coluccio A, Kochian LV, Liao H. Low pH, aluminum, and phosphorus coordinately regulate malate exudation through GmALMT1 to improve soybean adaptation to acid soils. Plant Physiol. 2013;161(3):1347–61.
Li CC, Gui SH, Yang T, Walk T, Wang XR, Liao H. Identification of soybean purple acid phosphatase genes and their expression responses to phosphorus availability and symbiosis. Ann Bot. 2012;109(1):275–85.
Qin L, Guo YX, Chen LY, Liang RK, Gu M, Xu GH, Zhao J, Walk T, Liao H. Functional characterization of 14 Pht1 family genes in yeast and their expressions in response to nutrient starvation in soybean. PLoS One. 2012;7(10):e47726.
Krajinski F, Courty PE, Sieh D, Franken P, Zhang H, Bucher M, Gerlach N, Kryvoruchko I, Zoeller D, Udvardi M, et al. The H+-ATPase HA1 of Medicago truncatula is essential for phosphate transport and plant growth during arbuscular mycorrhizal symbiosis. Plant Cell. 2014;26(4):1808–17.
Pandey BK, Mehra P, Verma L, Bhadouria J, Giri J. OsHAD1, a haloacid dehalogenase-like APase, enhances phosphate accumulation. Plant Physiol. 2017;174(4):2316–32.
Chen JY, Wang YF, Wang F, Yang J, Gao MX, Li CY, Liu YY, Liu Y, Yamaji N, Ma JF, et al. The rice CK2 kinase regulates trafficking of phosphate transporters in response to phosphate levels. Plant Cell. 2015;27(3):711–23.
Peng MS, Hannam C, Gu HL, Bi YM, Rothstein SJ. A mutation in NLA, which encodes a RING-type ubiquitin ligase, disrupts the adaptability of Arabidopsis to nitrogen limitation. Plant J. 2007;50(2):320–37.
Duan K, Yi KK, Dang L, Huang HJ, Wu W, Wu P. Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation. Plant J. 2008;54(6):965–75.
Wang C, Ying S, Huang HJ, Li K, Wu P, Shou HX. Involvement of OsSPX1 in phosphate homeostasis in rice. Plant J. 2009;57(5):895–904.
Zhang JY, Zhou X, Xu Y, Yao ML, Xie FB, Gai JY, Li Y, Yang SP. Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis. Plant Sci. 2016;248:82–91.
Secco D, Wang C, Arpat BA, Wang ZY, Poirier Y, Tyerman SD, Wu P, Shou HX, Whelan J. The emerging importance of the SPX domain-containing proteins in phosphate homeostasis. New Phytol. 2012;193(4):842–51.
Yue WH, Ying YH, Wang C, Zhao Y, Dong CH, Whelan J, Shou HX. OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters. Plant J. 2017;90(6):1040–51.
Peng MS, Hudson D, Schofield A, Tsao R, Yang R, Gu HL, Bi YM, Rothstein SJ. Adaptation of Arabidopsis to nitrogen limitation involves induction of anthocyanin synthesis which is controlled by the NLA gene. J Exp Bot. 2008;59(11):2933–44.
Kant S, Peng MS, Rothstein SJ. Genetic regulation by NLA and microRNA827 for maintaining nitrate-dependent phosphate homeostasis in Arabidopsis. PLoS Genet. 2011;7(3):e1002021.
Lin WY, Huang TK, Chiou TJ. Nitrogen limitation adaptation, a target of microRNA827, mediates degradation of plasma membrane-localized phosphate transporters to maintain phosphate homeostasis in Arabidopsis. Plant Cell. 2013;25(10):4061–74.
Li DM, Zhao X, Han YP, Li WB, Xie FT. Genome-wide association mapping for seed protein and oil contents using a large panel of soybean accessions. Genomics. 2018; 111(1):90–95.
Cui MY, Zhang W, Zhao J, Yan XY, Huang W, Teng QY, Liu H, Jiang HY. Effects of different kinds and quantity of fertilizer on soybean yield. Modern Agr Sci and Tech. 2018;18:1–3.
Wu DT, Zhang XX, Gong ZP, Ma CM, Zhang L. Effects of phosphorus nutrition on P absorption and yields of soybean. Plant Nutri Fertilizer Sci. 2012;18(3):670–7.
Lander ES, Botstein D. Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics. 1989;121:185–99.
Thornsberry JM, Goodman MM, Doebley J, Kresovich S, Nielsen D, Buckler ES. Dwarf8 polymorphisms associate with variation in flowering time. Nat Genet. 2001;28:286–9.
Li YD, Wang YJ, Tong YP, Gao JG, Zhang JS, Chen SY. QTL mapping of phosphorus deficiency tolerance in soybean (Glycine max L. Merr.). Euphytica. 2005;142(1–2):137–42.
Zhang D, Cheng H, Geng LY, Kan GZ, Cui SY, Meng QC, Gai JY, Yu DY. Detection of quantitative trait loci for phosphorus deficiency tolerance at soybean seedling stage. Euphytica. 2009;167(3):313–22.
Ning LH, Kan GZ, Du WK, Guo SW, Wang Q, Zhang GZ, Cheng H, Yu DY. Association analysis for detecting significant single nucleotide polymorphisms for phosphorus-deficiency tolerance at the seedling stage in soybean [Glycine max (L) Merr]. Breeding Sci. 2016;66(2):191–203.
Zhang D, Song HN, Cheng H, Hao DR, Wang H, Kan GZ, Jin HX, Yu DY. The acid phosphatase-encoding gene GmACP1 contributes to soybean tolerance to low-phosphorus stress. PLoS Genet. 2014;10(1):e1004061.
Cai ZD, Cheng YB, Xian PQ, Ma QB, Wen K, Xia QJ, Zhang GY, Nian H. Acid phosphatase gene GmHAD1 linked to low phosphorus tolerance in soybean, through fine mapping. Theor Appl Genet. 2018;131:1715–28.
Wang J, Chu SS, Zhang HR, Zhu Y, Cheng H, Yu DY. Development and application of a novel genome-wide SNP array reveals domestication history in soybean. Sci Rep. 2016;6:20728.
Wu JJ, Xu PF, Liu LJ, Zhang SZ, Wang JS, Lin WG, Zhong P, Wei L, Dong DJ. Mapping QTLs for phosphorus-deficiency tolerance in soybean at seedling stage. Int Conf Biomed Eng Biotechnol. 2012:370–8. https://doi.org/10.1109/iCBEB.2012.269.
Park BS, Seo JS, Chua NH. NITROGEN LIMITATION ADAPTATION recruits PHOSPHATE2 to target the PHOSPHATE transporter PT2 for degradation during the regulation of Arabidopsis phosphate homeostasis. Plant Cell. 2014;26(1):454–64.
Yan JB, Warburton M, Crouch J. Association mapping for enhancing maize (Zea mays L.) genetic improvement. Crop Sci. 2011;51(2):433–49.
Xu C, Zhang HW, Sun JH, Guo ZF, Zou C, Li WX, Xie CX, Huang CL, Xu RN, Liao H, et al. Genome-wide association study dissects yield components associated with low-phosphorus stress tolerance in maize. Theor Appl Genet. 2018;131:1699–714.
Wang M, Li WZ, Fang C, Xu F, Liu YC, Wang Z, Yang R, Zhang M, Liu SL, Lu SJ, et al. Parallel selection on a dormancy gene during domestication of crops from multiple families. Nat Genet. 2018;50(10):1435–41.
Chu SS, Wang J, Zhu Y, Liu SL, Zhou XQ, Zhang HR, Wang CE, Yan WM, Tian ZX, Cheng H, et al. An R2R3-type MYB transcription factor, GmMYB29, regulates isoflavone biosynthesis in soybean. PLoS Genet. 2017;13(5):e1006770.
Zhang W, Liao XL, Cui YM, Ma WY, Zhang XN, Du HY, Ma YJ, Ning LH, Wang H, Huang F, et al. A cation diffusion facilitator, GmCDF1, negatively regulates salt tolerance in soybean. PLoS Genet. 2019;15(1):e1007798.
Chen YF, Li LQ, Xu Q, Kong YH, Wang H, Wu WH. The WRKY6 transcription factor modulates PHOSPHATE1 expression in response to low Pi stress in Arabidopsis. Plant Cell. 2009;21(11):3554–66.
Wang H, Xu Q, Kong YH, Chen Y, Duan JY, Wu WH, Chen YF. Arabidopsis WRKY45 transcription factor activates PHOSPHATE TRANSPORTER1;1 expression in response to phosphate starvation. Plant Physiol. 2014;164(4):2020–9.
Devaiah BN, S.Karthikeyan A, Raghothama KG. WRKY75 transcription factor is a modulator of phosphate acquisition and root development in Arabidopsis. Plant Physiol. 2007;143(4):1789–801.
Tuller T, Ruppin E, Kupiec M. Properties of untranslated regions of the S cerevisiae genome. BMC Genomics. 2009;10:391.
Shi JQ, Li RY, Qiu D, Jiang CC, Long Y, Morgan C, Bancroft I, Zhao JY, Meng JL. Unraveling the complex trait of crop yield with quantitative trait loci mapping in Brassica napus. Genetics. 2009;182(3):851–61.
Zhang ZW, Ersoz E, Lai CQ, Todhunter RJ, Tiwari HK, Gore MA, Bradbury PJ, Yu JM, Arnett DK, Ordovas JM, et al. Mixed linear model approach adapted for genome-wide association studies. Nat Genet. 2010;42(4):355–60.
Bradbury PJ, Zhang ZW, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES. TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics. 2007;23(19):2633–5.
Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics. 2005;21(2):263–5.
Gabriel SB, Schaffner SF, Nguyen H, Moore JM, Roy J, Blumenstiel B, Higgins J, DeFelice M, Lochner A, Faggart M, et al. The structure of haplotype blocks in the human genome. Science. 2002;296:2225–9.
Schweiger R, Schwenkert S. Protein-protein interactions visualized by bimolecular fluorescence complementation in tobacco protoplasts and leaves. Jove-J Vis Exp. 2014;85:e51327.
Kereszt A, Li DX, Indrasumunar A, Nguyen CD, Nontachaiyapoom S, Kinkema M, Gresshoff PM. Agrobacterium rhizogenes-mediated transformation of soybean to study root biology. Nat Protoc. 2007;2(4):948–52.
Song HN, Yin ZT, Chao MN, Ning LH, Zhang D, Yu DY. Functional properties and expression quantitative trait loci for phosphate transporter GmPT1 in soybean. Plant Cell Environ. 2013;37(2):462–72.