Table 2 Six SNP markers with polymorphisms associated with the year of first registration for varieties
Marker ID | Chromosome | Position | Corrected p value | Frequency REF | Frequency ALT | Gene ID | Translation effect | GO annotation | A. thaliana ortholog |
|---|---|---|---|---|---|---|---|---|---|
1134008|F|0–29|CA | 2A | 6,420,426 | 0.001445 | 0,42 | 0,58 | – | – | – | – |
997149|F|0–32|TC | 2A | 8,142,744 | 0.001036 | 0,40 | 0,60 | TraesCS2A02G017300 | MODIFIER | – | – |
1002630|F|0–15|GA | 2D | 12,332,115 | 0.001036 | 0,73 | 0,27 | TraesCS2D02G030100 | LOW | GO:0016829 lyase activity GO:0000287 magnesium ion binding GO:0010333 terpene synthase activity GO:0046872 metal ion binding GO:0000287 magnesium ion binding GO:0010333 terpene synthase activity GO:0016102 diterpenoid biosynthetic process | GA2 |
1204154|F|0–9|CT | Un | 12,441,675 | 0.001036 | 0,47 | 0,53 | TraesCSU02G008700 | LOW | GO:0016829 lyase activity GO:0000287 magnesium ion binding GO:0010333 terpene synthase activity GO:0009686 gibberellin biosynthetic process GO:0009570 chloroplast stroma GO:0046872 metal ion binding GO:0009899 ent-kaurene synthase activity GO:0000287 magnesium ion binding GO:0010333 terpene synthase activity GO:0016102 diterpenoid biosynthetic process | GA2 |
1015908|F|0–35|GC | Un | 236,255,714 | 0.001036 | 0,30 | 0,70 | TraesCSU02G163600 | MODIFIER | GO:0008234 cysteine-type peptidase activity GO:0006508 proteolysis | SAG12 |
1237275|F|0–14|AG | Un | 248,331,142 | 0.001464 | 0,59 | 0,41 | TraesCSU02G169100 | LOW | GO:0016788 hydrolase activity, acting on ester bonds | – |