Delwiche CF, Cooper ED. The evolutionary origin of a terrestrial Flora. Current Biology Cb. 2015;25(19):R899–910.
Article
CAS
Google Scholar
Harholt J, Moestrup Ø, Ulvskov P. Why plants were terrestrial from the beginning. Trends Plant Sci. 2016;21(2):96–101.
Article
CAS
Google Scholar
Catarino B, Hetherington AJ, Emms DM, Kelly S, Dolan L. The stepwise increase in the number of transcription factor families in the Precambrian predated the diversification of plants on land. Mol Biol Evol. 2016;33(11):2815.
Article
CAS
Google Scholar
Moghe G, Last RL. Something old, something new: conserved enzymes and the evolution of novelty in plant specialized metabolism. Plant Physiol. 2015;169(3):1512–23.
CAS
PubMed
PubMed Central
Google Scholar
Rensing SA. Gene duplication as a driver of plant morphogenetic evolution. Curr Opin Plant Biol. 2014;17(1):43–8.
Article
CAS
Google Scholar
Zhang C, Zhang L, Wang D, Ma H, Liu B, Shi Z, Ma X, Chen Y, Chen Q. Evolutionary history of the glycoside hydrolase 3 (GH3) family based on the sequenced genomes of 48 plants and identification of Jasmonic acid-related GH3 proteins in Solanum tuberosum. Int J Mol Sci. 2018;19(7):1850.
Article
Google Scholar
Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F: Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell 2017, 171(2):págs. 287–304.
Zhang L, Tan Q, Lee R, Trethewy A, Lee YH, Tegeder M. Altered xylem-phloem transfer of amino acids affects metabolism and leads to increased seed yield and oil content in Arabidopsis. Plant Cell. 2010;22(11):3603–20.
Article
CAS
Google Scholar
Rentsch D, Schmidt S, Tegeder M. Transporters for uptake and allocation of organic nitrogen compounds in plants. FEBS Lett. 2007;581(12):2281–9.
Article
CAS
Google Scholar
Boudko DY. Molecular ontology of amino acid. Transport. 2010:379–472.
Chang AB, Lin R, Studley WK, Tran CV, Saier MH Jr. Phylogeny as a guide to structure and function of membrane transport proteins (review). Membr Biochem. 2004;21(3):171–81.
Article
CAS
Google Scholar
Cheng L, Yuan HY, Ren R, Zhao SQ, Han YP, Zhou QY, Ke DX, Wang YX, Wang L. Genome-wide identification, classification, and expression analysis of amino acid transporter gene family in glycine max. Front Plant Sci. 2016;7(320):515.
PubMed
PubMed Central
Google Scholar
Tegeder M, Ward JM. Molecular evolution of plant AAP and LHT amino acid transporters. Front Plant Sci. 2012;3:21.
Article
CAS
Google Scholar
Lu Y, Song Z, Kai L, Lian X, Cai H. Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice. Acta Physiol Plant. 2012;34(5):1943–62.
Article
CAS
Google Scholar
Emery L, Whelan S, Hirschi KD, Pittman JK. Protein phylogenetic analysis of Ca2+/cation Antiporters and insights into their evolution in plants. Front Plant Sci. 2012;3(4):1.
CAS
PubMed
PubMed Central
Google Scholar
Marchler-Bauer A, Bo Y, Han L, He J, Lanczycki CJ, Lu S, Chitsaz F, Derbyshire MK, Geer RC, Gonzales NR, et al. CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res. 2017;45(D1):D200–3.
Article
CAS
Google Scholar
Sanders A, Collier R, Trethewy A, Gould G, Sieker R, Tegeder M. AAP1 regulates import of amino acids into developing Arabidopsis embryos. Plant J. 2010;59(4):540–52.
Article
Google Scholar
Fischer W, Kwart M, Hummel S, Frommer WB. Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis. J Biol Chem. 1995;270(27):16315–20.
Article
CAS
Google Scholar
Rentsch D, Hirner B, Schmelzer E, Frommer WB. Salt stress-induced proline transporters and salt stress-repressed broad specificity amino acid permeases identified by suppression of a yeast amino acid permease-targeting mutant. Plant Cell. 1996;8(8):1437–46.
CAS
PubMed
PubMed Central
Google Scholar
Tegeder M, Rentsch D. Uptake and partitioning of amino acids and peptides. Mol Plant. 2010;3(6):997–1011.
Article
CAS
Google Scholar
Peng B, Kong H, Li Y, Wang L, Zhong M, Sun L, Gao G, Zhang Q, Luo L, Wang G. OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice. Nat Commun. 2014;5(1):4847.
Article
CAS
Google Scholar
Koch W, Kwart M, Laubner M, Heineke D, Stransky H, Frommer WB, Tegeder M. Reduced amino acid content in transgenic potato tubers due to antisense inhibition of the leaf H+/amino acid symporter StAAP1. Plant J. 2010;33(2):211–20.
Article
Google Scholar
Rolletschek H, Heim U, Borisjuk L, Saalbach I, Wobus U, Weber H. Ectopic expression of an amino acid transporter (VfAAP1) in seeds of Vicia narbonensis and pea increases storage proteins. Plant Physiol. 2005;137(4):1236–49.
Article
CAS
Google Scholar
Romani F, Reinheimer R, Florent SN, Bowman JL, Moreno JE. Evolutionary history of HOMEODOMAIN LEUCINE ZIPPER transcription factors during plant transition to land. New Phytol. 2018;219(1):408–21.
Article
CAS
Google Scholar
Ma H, Cao X, Shi S, Li S, Gao J, Ma Y, Zhao Q, Chen Q. Genome-wide survey and expression analysis of the amino acid transporter superfamily in potato (Solanum tuberosum L.). Plant Physiol Biochem. 2016;107:164–77.
Article
CAS
Google Scholar
Lei Sheng LD, Yan H, Zhao Y, Dong Q, Li Q, Li X, Cheng B, Haiyang J. A Genome-Wide Analysis of the AAAP Gene Family in Maize. J Proteomic Bioinform. 2014;07(1):22–33.
Zhao H, Ma H, Li Y, Xin W, Jie Z. Genome-Wide Survey and Expression Analysis of Amino Acid Transporter Gene Family in Rice (Oryza sativa L). Plos One. 2012;7(11)):e49210.
Article
CAS
Google Scholar
Zhang W, Sun Z. Random local neighbor joining: a new method for reconstructing phylogenetic trees. Mol Phylogenet Evol. 2008;47(1):117–28.
Article
CAS
Google Scholar
Lee TH, Kim J, Robertson JS, Paterson AH. Plant genome duplication database. Methods Mol Biol. 2017;1533:267–77.
Article
CAS
Google Scholar
Tae-Ho L, Haibao T, Xiyin W, Paterson AH. PGDD: a database of gene and genome duplication in plants. Nucleic Acids Res. 2013;41(Database issue):1152–8.
Google Scholar
Yupeng W, Haibao T, Debarry JD, Xu T, Jingping L, Xiyin W, Tae-Ho L, Huizhe J, Barry M, Hui G. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res. 2012;40(7):e49.
Article
Google Scholar
Rozas J, Ferrer-Mata A, SÃ nchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sã n-GA: DnaSP 6: DNA Sequence Polymorphism Analysis of Large Datasets. Mol Biol Evol 2017;34(12).
Blanc G, Agarkova I, Grimwood J, Kuo A, Brueggeman A, Dunigan DD, Gurnon J, Ladunga I, Lindquist E, Lucas S. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol. 2012;13(5):1–12.
Rogozin IB. Origin and evolution of spliceosomal introns. Biol Direct. 2012;7(1):11.
Article
CAS
Google Scholar
Roy SW, Penny D. Patterns of intron loss and gain in plants: intron loss-dominated evolution and genome-wide comparison of O. sativa and A. thaliana. Mol Biol Evol. 2007;24(1):171–81.
Article
CAS
Google Scholar
Rice DW, Alverson AJ, Richardson AO, Young GJ, Sanchezpuerta MV, Munzinger J, Barry K, Boore JL, Zhang Y, Depamphilis CW. Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella. Science. 2013;342(6165):1468–73.
Article
CAS
Google Scholar
Zheng W, Zhengkui Z, Yunfeng L, Tengfei L, Qing L, Yuanyuan J, Congcong L, Chao F, Min W, Mian W. Functional evolution of phosphatidylethanolamine binding proteins in soybean and Arabidopsis. Plant Cell. 2015;27(2):323.
Article
Google Scholar
Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol. 2003;18(6):292–8.
Article
Google Scholar
Hurst LD. The K a/ K s ratio: diagnosing the form of sequence evolution. Trends Genet. 2002;18(9):486–7.
Article
Google Scholar
Arcadi N, Barton NH. Chromosomal speciation and molecular divergence--accelerated evolution in rearranged chromosomes. Science. 2003;300(5617):321–4.
Article
Google Scholar
Conesa A, Götz S. Blast2GO: a comprehensive suite for functional analysis in plant genomics. Int J Plant Genom. 2008;2008(2008):619832.
Google Scholar
Taylor MR, Reinders A, Ward JM. Transport function of Rice amino acid Permeases (AAPs). Plant Cell Physiol. 2015;56(7):1355.
Article
CAS
Google Scholar
Singh VK, Jain M, Garg R. Genome-wide analysis and expression profiling suggest diverse roles of GH3 genes during development and abiotic stress responses in legumes. Front Plant Sci. 2014;5:789.
PubMed
Google Scholar