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Fig. 1 | BMC Genomics

Fig. 1

From: Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Fig. 1

MLST phylogenetic tree for C. psittaci strain 84/2334 and representative strains of Chlamydiaceae species. The consensus PhyML phylogenetic tree of a 3147 bp alignment of concatenated sequences of seven MLST housekeeping gene fragments (enoA, fumC, gatA, gidA, hemN, hlfX and oppA) was estimated in TOPALi by Maximum Likelihood using a GTR + G + I substitution and rate heterogeneity model, according to BIC model selection, and 100 non-parametric bootstrap replicates. The tree is rooted on the C. trachomatis/muridarum/suis branch and bootstrap support is indicated by the number at the node. The scale bar indicates the expected substitutions per site. Genotypes are given in square brackets. The tree was prepared for publication in Dendroscope. Strain 84/2334 is in bold and red font. Classical and avian C. abortus strains are in blue and green fonts, respectively

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BMC Genomics

ISSN: 1471-2164

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