Finstermeier K, Zinner D, Brameier M, Meyer M, Kreuz E, Hofreiter M, Roos C. A mitogenomic phylogeny of living primates. PLoS One. 2013;8(7):e69504. https://doi.org/10.1371/journal.pone.0069504.
Article
CAS
PubMed
PubMed Central
Google Scholar
Malukiewicz J, Boere V, Fuzessy LF, Grativol AD, De Oliveira I, Pereira LC, et al. Natural and anthropogenic hybridization in two species of eastern Brazilian marmosets (Callithrix jacchus and C. penicillata). PLoS ONE. 2015;10(6):e0127268.
Article
PubMed
PubMed Central
Google Scholar
Perelman P, Johnson WE, Roos C, Seuanez HN, Hovarth JE, Moreira AM, et al. A molecular phylogeny of living primates. PLoS Genet. 2011;7(3):e1001342. https://doi.org/10.1371/journal.pgen.1001342.
Article
CAS
PubMed
PubMed Central
Google Scholar
Buckner JC, Lynch-Alfaro JW, Rylands AB, Alfaro ME. Biogeography of the marmosets and tamarins (Callitrichidae). Mol Phylogenet Evol. 2015;82B:413–25.
Article
Google Scholar
Rylands AB, Coimbra-Filho AF, Mittermeier RA. The systematics and distributions of the marmosets (Callithrix, Callibella, Cebuella, and Mico) and Callimico (Callimico) (Callitrichidae, Primates). In: Ford SM, Porter LM, Davis LC, editors. The smallest anthropoids: the marmoset/Callimico radiation. New York: Springer; 2009. p. 25–61. https://doi.org/10.1007/978-1-4419-0293-1_2.
Chapter
Google Scholar
Malukiewicz J. A review of experimental, natural, and anthropogenic hybridization in Callithrix marmosets. Int J Primatol. 2019;40(1):72–98. https://doi.org/10.1007/s10764-018-0068-0.
Article
Google Scholar
Moraes AM, Vancine MH, Moraes AM, de Oliveira Cordeiro CL, Pinto MP, Lima AA, Culot L, Silva TSF, Collevatti RG, Ribeiro MC, Sobral-Souza T. Predicting the potential hybridization zones between native and invasive marmosets within Neotropical biodiversity hotspots. Global Ecol Conserv. 2019;20:e00706. https://doi.org/10.1016/j.gecco.2019.e00706.
Article
Google Scholar
Vale CA, Neto LM, Prezoto F. Distribution and invasive potential of the black-tufted marmoset Callithrix penicillata in the Brazilian territory. Sci Plena. 2020;16:052401.
Google Scholar
Carvalho RS, Bergallo HG, Cronemberger C, Guimarães-Luiz T, Igayara-Souza CA, Jerusalinsky L, et al. Callithrix aurita: a tiny primate on the edge of extinction in the Brazilian Atlantic Forest. Neotrop Primates. 2018;24:1–8.
Google Scholar
Silva FFR, Malukiewicz J, Silva LC, Carvalho RS, Ruiz-Miranda CR, Coelho FAS, et al. A survey of wild and introduced marmosets (Callithrix: Callitrichidae) in the southern and eastern portions of the state of Minas Gerais, Brazil. Primate Conserv. 2018;32:1–18.
Google Scholar
Carvalho RS. Conservação do saguis-da-serra-escuro (Callithrix aurita (Primates)) – Analise molecular e colormetrica de populações do gênero Callithrix e seus híbridos: PhD dissertation, Universidade do Estado do Rio de Janeiro; 2015.
Google Scholar
Melo F, Bicca-Marques J, Ferraz DS, Jerusalinsky L, Mittermeier RA, Oliveira L, et al. Callithrix aurita. In: The IUCN Red List of Threatened Species; 2019. p. e.T3570A17936433. https://doi.org/10.2305/IUCN.UK.2019-3.RLTS.T3570A17936433.en. Downloaded 13 Feb 2020.
Chapter
Google Scholar
Rylands AB, Ferrari SF, Mendes SL. Callithrix flaviceps. In: The IUCN Red List of Threatened Species; 2008. p. e.T3571A9951402. https://doi.org/10.2305/IUCN.UK.2008.RLTS.T3571A9951402.en. Downloaded 13 Feb 2020.
Chapter
Google Scholar
Zinner D, Arnold ML, Roos C. The strange blood: natural hybridization in primates. Evol Anthropol. 2011;20(3):96–103. https://doi.org/10.1002/evan.20301.
Article
PubMed
Google Scholar
Zinner D, Wertheimer J, Liedigk R, Groeneveld LF, Christian RC. Baboon phylogeny as inferred from complete mitochondrial genomes. Am J Phys Anthropol. 2013;150(1):133–40. https://doi.org/10.1002/ajpa.22185.
Article
PubMed
PubMed Central
Google Scholar
Chown SL, Hodgins KA, Griffin PC, Oakeshott JG, Byrne M, Hoffmann AA. Biological invasions, climate change and genomics. Evol Appl. 2015;8(1):23–46. https://doi.org/10.1111/eva.12234.
Article
PubMed
Google Scholar
Castro JA, Picornell A, Ramon M. Mitochondrial DNA: a tool for population genetics studies. Int Microbiol. 1998;1(4):327–32.
CAS
PubMed
Google Scholar
Brown WM, George M Jr, Wilson AC. Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci U S A. 1979;76(4):1967–71. https://doi.org/10.1073/pnas.76.4.1967.
Article
CAS
PubMed
PubMed Central
Google Scholar
Mundy NI, Pissinatti A, Woodruff DS. Multiple nuclear insertions of mitochondrial cytochrome b sequences in callitrichine primates. Mol Biol Evol. 2000;17(7):1075–80. https://doi.org/10.1093/oxfordjournals.molbev.a026388.
Article
CAS
PubMed
Google Scholar
Schneider H, Bernardi JAR, da Cunha DB, Tagliaro CH, Vallinoto M, Ferrari SF, Sampaio I. A molecular analysis of the evolutionary relationships in the Callitrichinae with emphasis on the position of the dwarf marmoset. ZoolScr. 2012;41:1–10.
Google Scholar
Tagliaro CH, Schneider MPC, Schneider H, Sampaio IC, Stanhope MJ. Marmoset phylogenetics, conservation perspectives, and evolution of the mtDNA control region. Mol Biol Evol. 1997;14(6):674–84. https://doi.org/10.1093/oxfordjournals.molbev.a025807.
Article
CAS
PubMed
Google Scholar
Tagliaro CH, Schneider MPC, Schneider H, Sampaio I, Stanhope M. Molecular studies of Callithrix pygmaea (primates, Platyrrhini) based on transferrin intronic and ND1 regions: implications for taxonomy and conservation. Genet Mol Biol. 2000;23(4):729–37. https://doi.org/10.1590/S1415-47572000000400006.
Article
Google Scholar
Malukiewicz J, Boere V, Fuzessy LF, Grativol AD, French JA. De Oliveira e Silva I, et al. hybridization effects and genetic diversity of the common and black-tufted marmoset (Callithrix jacchus and Callithrix penicillata) mitochondrial control region. Am J Phys Anthropol. 2014;155(4):522–36. https://doi.org/10.1002/ajpa.22605.
Article
PubMed
Google Scholar
Malukiewicz J, Hepp CM, Guschanski K, Stone AC. Phylogeny of the jacchus group of Callithrix marmosets based on complete mitochondrial genomes. Am J Phys Anthropol. 2017;162(1):157–69. https://doi.org/10.1002/ajpa.23105.
Article
PubMed
Google Scholar
Dos Reis M, Gunnell GF, Barba-Montoya J, Wilkins A, Yang Z, Yoder AD. Using phylogenomic data to explore the effects of relaxed clocks and calibration strategies on divergence time estimation: primates as a test case. Syst Biol. 2018;67(4):594–615. https://doi.org/10.1093/sysbio/syy001.
Article
PubMed
PubMed Central
Google Scholar
Springer MS, Meredith RW, Gatesy J, Emerling CA, Park J, Rabosky DL, Stadler T, Steiner C, Ryder OA, Janečka JE, Fisher CA, Murphy WJ. Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix. PLoS One. 2012;7(11):e49521. https://doi.org/10.1371/journal.pone.0049521.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rogers J, Gibbs RA. Applications of next generation sequencing primate genomics: emerging patterns of genome content and dynamics. Nat Rev Genet. 2014;15(5):347–59. https://doi.org/10.1038/nrg3707.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kinzey WG. Distribution of primates and forest refuges. In: Prance GT, editor. Biological diversification in the tropics. New York: Columbia University Press; 1982. p. 455–82.
Google Scholar
Turchetto-Zolet AC, Pinheiro F, Salgueiro F, Palma-Silva C. Phylogeographical patterns shed light on evolutionary process in South America. Mol Ecol. 2013;22(5):1193–213. https://doi.org/10.1111/mec.12164.
Article
CAS
PubMed
Google Scholar
Fuzessy LF, Silva IO, Malukiewicz J, Silva FFR, Pônzio MC, Boere V, Ackermann RR. Morphological variation in wild marmosets (Callithrix penicillata and C. geoffroyi) and their hybrids. Evol Biol. 2014;41(3):480–93. https://doi.org/10.1007/s11692-014-9284-5.
Article
Google Scholar
Ruiz-Miranda CR, Affonso AG, Martins A, Beck B. Distribuição do sagui (Callithrix jacchus) nas areas de ocorrência do mico-leão-dourado (Leontopithecus rosalia) no estado do Rio de Janeiro. Neotrop Primates. 2000;8:98–100.
Google Scholar
Frehse FA, Braga RR, Nocera GA, Vitale JRS. Non-native species and invasion biology in a megadiverse country: scientometric analysis and ecological interactions in Brazil. Biol Invasions. 2016;18(12):3713–25. https://doi.org/10.1007/s10530-016-1260-9.
Article
Google Scholar
Ribeiro MC, Metzger JP, Martensen AC, Ponzoni FJ, Hirota MM. The Brazilian Atlantic Forest: how much is left, and how is the remaining forest distributed? Implications for conservation. Biol Conserv. 2009;142(6):1141–53. https://doi.org/10.1016/j.biocon.2009.02.021.
Article
Google Scholar
Ribeiro MC, Martensen AC, Metzger JP, Tabarelli M, Scarano F, Fortin MJ. The Brazilian Atlantic Forest: a shrinking biodiversity hotspot. In: Zachos F, Habel J, editors. Biodiversity hotspots. Berlin: Springer; 2011. p. 5–21. https://doi.org/10.1007/978-3-642-20992-5_21.
Chapter
Google Scholar
Cortés-Ortiz L, Roos C, Zinner D. Introduction to special issue on primate hybridization and hybrid zones. Int J Primatol. 2019;40(1):1–8. https://doi.org/10.1007/s10764-019-00076-z.
Article
Google Scholar
Crispo E, Moore J, Lee-Yaw J, Gray S, Haller B. Broken barriers: human-induced changes to gene flow and introgression in animals. BioEssays. 2011;33(7):508–18. https://doi.org/10.1002/bies.201000154.
Article
PubMed
Google Scholar
Oliveira LC, Grelle CEV. Introduced primate species of an Atlantic Forest region in Brazil: present and future implications for the native fauna. TCS. 2012;5(1):112–20.
Google Scholar
Todesco M, Pascual M, Owens G, Ostevik K, Moyers B, Hübner S, et al. Hybridization and extinction. Evol Appl. 2016;9(7):892–908. https://doi.org/10.1111/eva.12367.
Article
CAS
PubMed
PubMed Central
Google Scholar
Detogne N, Ferreguetti AC, Mello JFF, Santana MC, Dias AC, da Mota NCJ, et al. Spatial distribution of buffy-tufted-ear (Callithrix aurita) and invasive marmosets (Callithrix spp.) in a tropical rainforest reserve in southwestern Brazil. Am J Primatol. 2017;79(12):e22718. https://doi.org/10.1002/ajp.22718.
Article
Google Scholar
Detogne N. O sagui-da-serra-escuro (Callithrix aurita) e os saguis invasores no Parque Nacional da Serra dos Órgãos, RJ, Brasil: distribuição espacial e estratégias de conservação: Master’s thesis, Universidade do Estado do Rio de Janeiro; 2015.
Google Scholar
Allendorf F, Leary R, Spruell P, Wenburg J. The problems with hybrids: setting conservation guidelines. TREE. 2001;16:613–22.
Google Scholar
McFarlane SE, Pemberton JM. Detecting the true extent of introgression during anthropogenic hybridization. Trends Ecol Evol. 2019;34(4):315–26. https://doi.org/10.1016/j.tree.2018.12.013.
Article
PubMed
Google Scholar
Rhymer JM, Simberloff D. Extinction by hybridization and introgression. Annu Rev Ecol Syst. 1996;27(1):83–109. https://doi.org/10.1146/annurev.ecolsys.27.1.83.
Article
Google Scholar
Wolf DE, Takebayashi N, Rieseberg LH. Predicting the risk of extinction through hybridization. Conserv Biol. 2001;15(4):1039–53. https://doi.org/10.1046/j.1523-1739.2001.0150041039.x.
Article
Google Scholar
Neves L, Bicca-Marques J, Jerusalinsky L, Mittermeier RA, Pereira DG, Rylands AB. Callithrix kuhlii. In: The IUCN red list of threatened species; 2019. p. e.T3575A17936243. https://doi.org/10.2305/IUCN.UK.2019-3.RLTS.T3575A17936243.en. Downloaded 30 Mar 2020.
Chapter
Google Scholar
Malukiewicz J, Boere V, Borstelmann de Oliveira MA, D’Arc M, Ferreira JVA, French J, Houman G, de Souza CAI, Jerusalinsky L, de Melo FR, Valença-Montenegro MM, Moreira SB, Silva IO, Pacheco FS, Rogers J, Pissinatti A, del Rosario R, Ross C, Ruiz-Miranda CR, Pereira LCM, Schiel N, da Silva FFR, Souto A, Šlipogor V, Tardif S. An introduction to the Callithrix genus and overview of recent advances in marmoset research: Preprints; 2020. p. 2020110256. https://doi.org/10.20944/preprints202011.0256.v2.
Tauer C, Stewart JF, Rodney W, Lilly CJ, Guldin JM, Nelson CD. Hybridization leads to loss of genetic integrity in shortleaf pine: unexpected consequences of pine management and fire suppression. J Forest. 2012;110(4):216–24. https://doi.org/10.5849/jof.11-044.
Article
Google Scholar
Sambrook J, Russel DW. Molecular cloning. 3rd ed. Cold Spring Harbor: CSHL Press; 2001.
Google Scholar
Dierckxsens N, Mardulyn P, Smits G. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 2017;45:e18.
Article
PubMed
Google Scholar
Maddison WP, Maddison D. Mesquite: a modular system for evolutionary analysis. Version 3.51. 2018. http://www.mesquiteproject.org. Accessed 17 Dec 2019.
Google Scholar
Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, et al. DnaSP 6: DNA sequence polymorphism analysis of large datasets. Mol Biol Evol. 2017;34(12):3299–302. https://doi.org/10.1093/molbev/msx248.
Article
CAS
PubMed
Google Scholar
Nguyen LT, Schmidt HA, Haeseler A, Minh BQ. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2015;32(1):268–74. https://doi.org/10.1093/molbev/msu300.
Article
CAS
PubMed
Google Scholar
Huelsenbeck JP. F Ronquist.. MRBAYES: Bayesian inference of phylogeny. Bioinformatics. 2001;17(8):754–5. https://doi.org/10.1093/bioinformatics/17.8.754.
Article
CAS
PubMed
Google Scholar
Ronquist F, Huelsenbeck JP. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003;19(12):1572–4. https://doi.org/10.1093/bioinformatics/btg180.
Article
CAS
PubMed
Google Scholar
Chernomor O, von Haeseler A, Minh BQ. Terrace aware data structure for phylogenomic inference from supermatrices. Syst Biol. 2016;65(6):997–1008. https://doi.org/10.1093/sysbio/syw037.
Article
PubMed
PubMed Central
Google Scholar
Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 2017;14(6):587–9. https://doi.org/10.1038/nmeth.4285.
Article
CAS
PubMed
PubMed Central
Google Scholar
Minh BQ, Nguyen MA, von Haeseler A. Ultrafast approximation for phylogenetic bootstrap. Mol Biol Evol. 2013;30(5):1188–95. https://doi.org/10.1093/molbev/mst024.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gelman A, Rubin DB. Inference from iterative simulation using multiple sequences (with discussion). Stat Sci. 1992;7(4):457–72. https://doi.org/10.1214/ss/1177011136.
Article
Google Scholar
Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ. BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comp Biol. 2014;10(4):e1003537. https://doi.org/10.1371/journal.pcbi.1003537.
Article
CAS
Google Scholar
Drummond AJ, Ho SYW, Phillips MJ, Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006;4(5):e88. https://doi.org/10.1371/journal.pbio.0040088.
Article
CAS
PubMed
PubMed Central
Google Scholar
Byrne H, Rylands AB, Carneiro JC, Lynch JWA, Bertulo F, Silva MNF, et al. Phylogenetic relationships of the New World titi monkeys (Callicebus): first appraisal of taxonomy based on molecular evidence. Front Zool. 2016;13(1):10. https://doi.org/10.1186/s12983-016-0142-4.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rambaut A, Suchard MA, Xie D, Drummond AJ. Tracer v1.6. 2014. http://beast.bio.ed.ac.uk/Tracer. Accessed 17 Dec 2019.
Google Scholar
Huson HD, Bryant D. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 2006;23(2):254–67. https://doi.org/10.1093/molbev/msj030.
Article
CAS
PubMed
Google Scholar
Yu Y, Blair C, He XJ. RASP 4: ancestral state reconstruction tool for multiple genes and characters. Mol Biol Evol. 2020;37(2):604–6. https://doi.org/10.1093/molbev/msz257.
Article
CAS
PubMed
Google Scholar
Yu Y, Harris AJ, Blair C, He XJ. RASP (reconstruct ancestral state in phylogenies): a tool for historical biogeography. Mol Phylogenet Evol. 2015;87:46–9. https://doi.org/10.1016/j.ympev.2015.03.008.
Article
PubMed
Google Scholar