Riaño-Pachón DM, Ruzicic S, Dreyer I, Mueller-Roeber B. PlnTFDB: an integrative plant transcription factor database. BMC Bioinformatics. 2007;8(1):42. https://doi.org/10.1186/1471-2105-8-42.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang H, Jin J, Tang L, Zhao Y, Gu X, Gao G, et al. PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res. 2011;39(suppl_1):D1114–7. https://doi.org/10.1093/nar/gkq1141.
Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science. 2000;290(5499):2105–10. https://doi.org/10.1126/science.290.5499.2105.
Wray GA, Hahn MW, Abouheif E, Balhoff JP, Pizer M, Rockman MV, et al. The evolution of transcriptional regulation in eukaryotes. Mol Biol Evol. 2003;20(9):1377–419. https://doi.org/10.1093/molbev/msg140.
Schwechheimer C, Zourelidou M, Bevan MW. Plant transcription factor studies. Annu Rev Plant Physiol Plant Mol Biol. 1998;49(1):127–50. https://doi.org/10.1146/annurev.arplant.49.1.127.
Article
CAS
PubMed
Google Scholar
Jin J, Zhang H, Kong L, Gao G, Luo J. PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Nucleic Acids Res. 2014;42(D1):D1182–7. https://doi.org/10.1093/nar/gkt1016.
Article
CAS
PubMed
Google Scholar
Sun X, Wang Y, Sui N. Transcriptional regulation of bHLH during plant response to stress. Biochem Biophys Res Commun. 2018;503(2):397–401.
Article
CAS
Google Scholar
Ledent V, Vervoort M. The basic helix-loop-helix protein family: comparative genomics and phylogenetic analysis. Genome Res. 2001;11(5):754–70. https://doi.org/10.1101/gr.177001.
Article
CAS
PubMed
PubMed Central
Google Scholar
Murre C, McCaw PS, Baltimore D. A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins. Cell. 1989;56(5):777–83. https://doi.org/10.1016/0092-8674(89)90682-X.
Article
CAS
PubMed
Google Scholar
Atchley WR, Terhalle W, Dress A. Positional dependence, cliques, and predictive motifs in the bHLH protein domain. J Mol Evol. 1999;48(5):501–16. https://doi.org/10.1007/PL00006494.
Article
CAS
PubMed
Google Scholar
Buck MJ, Atchley WR. Phylogenetic analysis of plant basic helix-loop-helix proteins. J Mol Evol. 2003;56(6):742–50. https://doi.org/10.1007/s00239-002-2449-3.
Article
CAS
PubMed
Google Scholar
Massari ME, Murre C. Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms. Mol Cell Biol. 2000;20(2):429–40. https://doi.org/10.1128/MCB.20.2.429-440.2000.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nair SK, Burley SK. Recognizing DNA in the library. Nature. 2000;404(6779):717–8.
Article
Google Scholar
Shimizu T, Toumoto A, Ihara K, Shimizu M, Kyogoku Y, Ogawa N, et al. Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition. EMBO J. 1997;16(15):4689–97.
Toledo-Ortiz G, Huq E, Quail PH. The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell. 2003;15(8):1749–70. https://doi.org/10.1105/tpc.013839.
Article
CAS
PubMed
PubMed Central
Google Scholar
Atchley WR, Fitch WM. A natural classification of the basic helix-loop-helix class of transcription factors. Proc Natl Acad Sci U S A. 1997;94(10):5172–6.
Article
CAS
Google Scholar
Pires N, Dolan L. Origin and diversification of basic-helix-loop-helix proteins in plants. Mol Biol Evol. 2010;27(4):862–74. https://doi.org/10.1093/molbev/msp288.
Article
PubMed
Google Scholar
Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, et al. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Plant Physiol. 2006;141(4):1167–84. https://doi.org/10.1104/pp.106.080580.
Amoutzias GD, Robertson DL, Oliver SG, Bornberg-Bauer E. Convergent evolution of gene networks by single-gene duplications in higher eukaryotes. EMBO Rep. 2004;5(3):274–9. https://doi.org/10.1038/sj.embor.7400096.
Article
CAS
PubMed
PubMed Central
Google Scholar
Stevens JD, Roalson EH, Skinner MK. Phylogenetic and expression analysis of the basic helix-loop-helix transcription factor gene family: genomic approach to cellular differentiation. Differentiation. 2008;76(9):1006–22. https://doi.org/10.1111/j.1432-0436.2008.00285.x.
Article
CAS
PubMed
PubMed Central
Google Scholar
Roig-Villanova I, Bou-Torrent J, Galstyan A, Carretero-Paulet L, Portolés S, Rodríguez-Concepción M, et al. Interaction of shade avoidance and auxin responses: a role for two novel atypical bHLH proteins. EMBO J. 2007;14(22):4756–67.
Leivar P, Monte E, Al-Sady B, Carle C, Storer A, Alonso JM, et al. The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. Plant Cell. 2008;20(2):337–52. https://doi.org/10.1105/tpc.107.052142.
Friedrichsen DM, Nemhauser J, Muramitsu T, Maloof JN, Alonso J, Ecker JR, et al. Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. Genetics. 2002;162(3):1445–56. https://doi.org/10.1093/genetics/162.3.1445.
Lu R, Zhang J, Liu D, Wei YL, Wang Y, Li XB. Characterization of bHLH/HLH genes that are involved in brassinosteroid (BR) signaling in fiber development of cotton (Gossypium hirsutum). BMC Plant Biol. 2018;18(1):304.
Article
CAS
Google Scholar
Onohata T, Gomi K. Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis. Plant Cell Rep. 2020;39(9):1175–84. https://doi.org/10.1007/s00299-020-02555-7.
Article
CAS
PubMed
Google Scholar
Wang R, Zhao P, Kong N, Lu R, Pei Y, Huang C, et al. Genome-Wide Identification and Characterization of the Potato bHLH Transcription Factor Family. Genes (Basel). 2018;9(1):54.
Fu Y, Win P, Zhang H, Li C, Shen Y, He F, et al. PtrARF2.1 Is Involved in Regulation of Leaf Development and Lignin Biosynthesis in Poplar Trees. Int J Mol Sci. 2019;20(17):4141.
Li Z, Liu C, Zhang Y, Wang B, Ran Q, Zhang J. The bHLH family member ZmPTF1 regulates drought tolerance in maize by promoting root development and abscisic acid synthesis. J Exp Bot. 2019;70(19):5471–86.
Article
CAS
Google Scholar
Chen HC, Hsieh-Feng V, Liao PC, Cheng WH, Liu LY, Yang YW, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol Biol. 2017;94(4–5):531–48. https://doi.org/10.1007/s11103-017-0624-6.
Yuan Y, Wu H, Wang N, Li J, Zhao W, Du J, et al. FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis. Cell Res. 2008;18(3):385–97. https://doi.org/10.1038/cr.2008.26.
Liu Y, Ji X, Nie X, Qu M, Zheng L, Tan Z, et al. Arabidopsis AtbHLH112 regulates the expression of genes involved in abiotic stress tolerance by binding to their E-box and GCG-box motifs. New Phytol. 2015;207(3):692–709. https://doi.org/10.1111/nph.13387.
Zhao Q, Xiang X, Liu D, Yang A, Wang Y. Tobacco Transcription Factor NtbHLH123 Confers Tolerance to Cold Stress by Regulating the NtCBF Pathway and Reactive Oxygen Species Homeostasis. Front Plant Sci. 2018;9:381.
Article
Google Scholar
Matus JT, Poupin MJ, Cañón P, Bordeu E, Alcalde JA, Arce-Johnson P. Isolation of WDR and bHLH genes related to flavonoid synthesis in grapevine (Vitis vinifera L.). Plant Mol Biol. 2010;72(6):607–20. https://doi.org/10.1007/s11103-010-9597-4.
Article
CAS
PubMed
Google Scholar
Quattrocchio F, Wing JF, van der Woude K, Mol JN, Koes R. Analysis of bHLH and MYB domain proteins: species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes. Plant J. 1998;13(4):475–88. https://doi.org/10.1046/j.1365-313X.1998.00046.x.
Article
CAS
PubMed
Google Scholar
Chen F, Hu Y, Vannozzi A, Wu KC, Cai HY, Qin Y, et al. The WRKY transcription factor family in model plants and crops. Crit Rev Plant Sci. 2018;36(5):1–25.
Ali TM, Hasnain A. Morphological, physicochemical, and pasting properties of modified white Sorghum (Sorghum bicolor) starch. Int J Food Prop. 2014;17(3):523–35. https://doi.org/10.1080/10942912.2012.654558.
Article
CAS
Google Scholar
Pelpolage SW, Han K, Koaze H, et al. Influence of enzyme-resistant fraction of sorghum (Sorghum bicolor L.) flour on gut microflora composition, short-chain fatty acid production and toxic substance metabolism [J]. J Food Nutr Res. 2019;58(2):135–45.
CAS
Google Scholar
Xiong Y, Zhang P, Warner RD, Fang Z. Sorghum Grain: From Genotype, Nutrition, and Phenolic Profile to Its Health Benefits and Food Applications. Compr Rev Food Sci Food Saf. 2019;18(6):2025-46.
Zhao ZY, Che P, Glassman K, Albertsen M. Nutritionally enhanced Sorghum for the arid and semiarid tropical areas of Africa. Methods Mol Biol. 1931;2019:197–207.
Google Scholar
Han Y, Song L, Liu S, Zou N, Li Y, Qin Y, et al. Simultaneous determination of 124 pesticide residues in Chinese liquor and liquor-making raw materials (sorghum and rice hull) by rapid Multi-plug Filtration Cleanup and gas chromatography-tandem mass spectrometry. Food Chem. 2018;241:258–67.
Prasad PV, Djanaguiraman M, Perumal R, Ciampitti IA. Impact of high temperature stress on floret fertility and individual grain weight of grain sorghum: sensitive stages and thresholds for temperature and duration. Front Plant Sci. 2015;6:820.
CAS
PubMed
PubMed Central
Google Scholar
Prasad PVV, Pisipati SR, Mutava RN, Tuinstra MR. Sensitivity of grain Sorghum to high temperature stress during reproductive development [J]. Crop Sci. 2008;48(5):1911–7. https://doi.org/10.2135/cropsci2008.01.0036.
Article
Google Scholar
Tsuji W, Ali MEK, Inanaga S, Sugimoto Y. Growth and gas exchange of three Sorghum cultivars under drought stress [J]. Biol Plant. 2003;46(4):583–7. https://doi.org/10.1023/A:1024875814296.
Article
Google Scholar
Rooney W L . Sorghum improvement—integrating traditional and new technology to produce improved genotypes [J]. Adv Agron, 2004, 83, 37–109, DOI: https://doi.org/10.1016/S0065-2113(04)83002-5.
Li H, Payne WA, Michels GJ, Rush CM. Reducing plant abiotic and biotic stress: drought and attacks of greenbugs, corn leaf aphids and virus disease in dryland sorghum. Environ Exp Bot. 2008;63(1–3):305–16. https://doi.org/10.1016/j.envexpbot.2007.11.014.
Article
Google Scholar
Paterson AH, Bowers JE, Bruggmann R, et al. The Sorghum bicolor genome and the diversification of grasses. Nature. 2009;457(7229):551–6.
Article
CAS
Google Scholar
Song XM, Huang ZN, Duan WK, Ren J, Liu TK, Li Y, et al. Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis). Mol Gen Genomics. 2014;289(1):77–91. https://doi.org/10.1007/s00438-013-0791-3.
Sun H, Fan HJ, Ling HQ. Genome-wide identification and characterization of the bHLH gene family in tomato. BMC Genomics. 2015;16(1):9.
Article
CAS
Google Scholar
Kavas M, Baloğlu MC, Atabay ES, Ziplar UT, Daşgan HY, Ünver T. Genome-wide characterization and expression analysis of common bean bHLH transcription factors in response to excess salt concentration. Mol Gen Genomics. 2016;291(1):129–43. https://doi.org/10.1007/s00438-015-1095-6.
Article
CAS
Google Scholar
Mao K, Dong Q, Li C, Liu C, Ma F. Genome Wide Identification and Characterization of Apple bHLH Transcription Factors and Expression Analysis in Response to Drought and Salt Stress. Front Plant Sci. 2017;8:480.
PubMed
PubMed Central
Google Scholar
Gao C, Sun J, Wang C, Dong Y, Xiao S, Wang X, et al. Genome-wide analysis of basic/helix-loop-helix gene family in peanut and assessment of its roles in pod development. PLoS One. 2017;12(7):e0181843.
Niu X, Guan Y, Chen S, Li H. Genome-wide analysis of basic helix-loop-helix (bHLH) transcription factors in Brachypodium distachyon. BMC Genomics. 2017;18(1):619.
Article
Google Scholar
Zhang T, Lv W, Zhang H, Ma L, Li P, Ge L, et al. Genome-wide analysis of the basic Helix-Loop-Helix (bHLH) transcription factor family in maize. BMC Plant Biol. 2018;18(1):235.
Wei K, Chen H. Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat. BMC Plant Biol. 2018;18(1):309.
Article
CAS
Google Scholar
Cheng X, Xiong R, Liu H, Wu M, Chen F. Hanwei Yan, Xiang Y. basic helix-loop-helix gene family: genome wide identification, phylogeny, and expression in Moso bamboo. Plant Physiol Biochem. 2018;132:104–19. https://doi.org/10.1016/j.plaphy.2018.08.036.
Article
CAS
PubMed
Google Scholar
Yingqi H, Ahmad N, Yuanyuan T, Jianyu L, Liyan W, Gang W, et al. Genome-Wide Identification, Expression Analysis, and Subcellular Localization of Carthamus tinctorius bHLH Transcription Factors. Int J Mol Sci. 2019;20(12):3044.
Li H, Gao W, Xue C, Zhang Y, Liu Z, Zhang Y, et al. Genome-wide analysis of the bHLH gene family in Chinese jujube (Ziziphus jujuba Mill.) and wild jujube. BMC Genomics. 2019;20(1):568.
Zhang Z, Chen J, Liang C, Liu F, Hou X, Zou X. Genome-Wide Identification and Characterization of the bHLH Transcription Factor Family in Pepper (Capsicum annuum L.). Front Genet. 2020;11:570156.
Article
CAS
Google Scholar
Zhu L, Zhao M, Chen M, Li L, Jiang Y, Liu S, et al. The bHLH gene family and its response to saline stress in Jilin ginseng, Panax ginseng C.a. Meyer. Mol Gen Genomics. 2020;295(4):877–90. https://doi.org/10.1007/s00438-020-01658-w.
Aslam M, Jakada BH, Fakher B, Greaves JG, Niu X, Su Z, et al. Genome-wide study of pineapple (Ananas comosus L.) bHLH transcription factors indicates that cryptochrome-interacting bHLH2 (AcCIB2) participates in flowering time regulation and abiotic stress response. BMC Genomics. 2020;21(1):735.
Sun W, Jin X, Ma Z, Chen H, Liu M. Basic helix-loop-helix (bHLH) gene family in Tartary buckwheat (Fagopyrum tataricum): Genome-wide identification, phylogeny, evolutionary expansion and expression analyses. Int J Biol Macromol. 2020;155:1478–90.
Article
CAS
Google Scholar
Zhao Y, Li X, Chen W, Peng X, Cheng X, Zhu S, et al. Whole-genome survey and characterization of MADS-box gene family in maize and sorghum [J]. Plant Cell Tissue Org Cult. 2011;105(2):159–73. https://doi.org/10.1007/s11240-010-9848-8.
Kushwaha H, Gupta S, Singh VK, Rastogi S, Yadav D. Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol Biol Rep. 2011;38(8):5037–53. https://doi.org/10.1007/s11033-010-0650-9.
Article
CAS
PubMed
Google Scholar
Yan HW, Hong L, Zhou YQ, Jiang HY, Zhu SW, Fan J, et al. A genome-wide analysis of the ERF gene family in sorghum. Genet Mol Res. 2013;12(2):2038–55.
Chang JZ, Yan FX, Qiao LY, Zheng J, Zhang FY, Liu QS. Genome-wide identification and expression analysis of SBP-box gene family in Sorghum bicolor L. Yi Chuan. 2016;38(6):569–80.
PubMed
Google Scholar
Nagaraju M, Reddy PS, Kumar SA, Kumar A, Rajasheker G, Rao DM, et al. Genome-wide identification and transcriptional profiling of small heat shock protein gene family under diverse abiotic stress conditions in Sorghum bicolor (L.). Int J Biol Macromol. 2020;142:822–34.
Nagaraju M, Kumar SA, Reddy PS, Kumar A, Rao DM, Kavi Kishor PB. Genome-scale identification, classification, and tissue specific expression analysis of late embryogenesis abundant (LEA) genes under abiotic stress conditions in Sorghum bicolor L. PLoS One. 2019;14(1):e0209980.
Article
CAS
Google Scholar
Sanjari S, Shirzadian-Khorramabad R, Shobbar ZS, Shahbazi M. Systematic analysis of NAC transcription factors' gene family and identification of post-flowering drought stress responsive members in sorghum. Plant Cell Rep. 2019;38(3):361–76. https://doi.org/10.1007/s00299-019-02371-8.
Article
CAS
PubMed
Google Scholar
Chunxia Zhang, Mingdi Bian, Hui Yu, Qing Liu, Zhenming Yang, (2011) Identification of alkaline stress-responsive genes of CBL family in sweet sorghum (Sorghum bicolor L.). Plant Physiology and Biochemistry 49 (11):1306-1312
Geng J, Liu JH. The transcription factor CsbHLH18 of sweet orange functions in modulation of cold tolerance and homeostasis of reactive oxygen species by regulating the antioxidant gene. J Exp Bot. 2018, 27, 69 (10), 2677-2692.
Dubos C, Le Gourrierec J, Baudry A, Huep G, Lanet E, Debeaujon I, et al. MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thaliana. Plant J. 2008;55(6):940–53. https://doi.org/10.1111/j.1365-313X.2008.03564.x.
Chandler JW, Cole M, Flier A, Werr W. BIM1, a bHLH protein involved in brassinosteroid signalling, controls Arabidopsis embryonic patterning via interaction with DORNROSCHEN and DORNROSCHEN-LIKE. Plant Mol Biol. 2009;69(1–2):57–68. https://doi.org/10.1007/s11103-008-9405-6.
Article
CAS
PubMed
Google Scholar
Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell. 2005;120(2):249–59.
Article
CAS
Google Scholar
Henriksson M, Lüscher B. Proteins of the Myc network: essential regulators of cell growth and differentiation. Adv Cancer Res. 1996;68:109–82. https://doi.org/10.1016/S0065-230X(08)60353-X.
Article
CAS
PubMed
Google Scholar
Carretero-Paulet L, Galstyan A, Roig-Villanova I, Martínez-García JF, Bilbao-Castro JR, Robertson DL. Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae. Plant Physiol. 2010;153(3):1398–412. https://doi.org/10.1104/pp.110.153593.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D. Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci U S A. 2003;100(20):11484–9.
Article
CAS
Google Scholar
Cannon SB, Mitra A, Baumgarten A, Young ND, May G. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol. 2004;4:10.
Article
Google Scholar
Mehan MR, Freimer NB, Ophoff RA. A genome-wide survey of segmental duplications that mediate common human genetic variation of chromosomal architecture. Hum Genomics. 2004;1(5):335–44. https://doi.org/10.1186/1479-7364-1-5-335.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hudson KA, Hudson ME. A classification of basic helix-loop-helix transcription factors of soybean. Int J Genomics. 2015;2015:603182.
Article
Google Scholar
Gremski K, Ditta G, Yanofsky MF. The HECATE genes regulate female reproductive tract development in Arabidopsis thaliana. Development. 2007;134(20):3593–601. https://doi.org/10.1242/dev.011510.
Article
CAS
PubMed
Google Scholar
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25(17):3389–402.
Liu M, Ma Z, Wang A, Zheng T, Huang L, Sun W, et al. Genome-Wide Investigation of the Auxin Response Factor Gene Family in Tartary Buckwheat (Fagopyrum tataricum). Int J Mol Sci. 2018;19(11):3526.
Finn RD, Clements J, Eddy SR. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011;39(Web Server issue):W29–37.
Article
CAS
Google Scholar
Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Res. 2000;28(1):263–6.
Article
CAS
Google Scholar
Letunic I, Bork P. 20 years of the SMART protein domain annotation resource. Nucleic Acids Res. 2018;46(D1):D493–6.
Article
CAS
Google Scholar
Thompson JD, Gibson TJ, Higgins DG. Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinformatics. 2002; Chapter 2: Unit 2. 3.
Guo AY, Zhu QH, Chen X, Luo JC. GSDS: a gene structure display server. Yi Chuan. 2007;29(8):1023–6. https://doi.org/10.1360/yc-007-1023.
Article
CAS
PubMed
Google Scholar
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009;37(Web Server issue):W202–8.
Xie T, Chen C, Li C, Liu J, Liu C, He Y. Genome-wide investigation of WRKY gene family in pineapple: evolution and expression profiles during development and stress. BMC Genomics. 2018;19(1):490.
Article
Google Scholar
Liu M, Ma Z, Sun W, Huang L, Wu Q, Tang Z, et al. Genome-wide analysis of the NAC transcription factor family in Tartary buckwheat (Fagopyrum tataricum). BMC Genomics. 2019;20(1):113.
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, et al. Circos: an information aesthetic for comparative genomics. Genome Res. 2009;19(9):1639–45. https://doi.org/10.1101/gr.092759.109.
Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res. 2012;40(7):e49. https://doi.org/10.1093/nar/gkr1293.
Wang D, Zhang Y, Zhang Z, Zhu J, Yu J. KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies. Genomics Proteomics Bioinformatics. 2010;8(1):77–80. https://doi.org/10.1016/S1672-0229(10)60008-3.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sudhakar Reddy P, Srinivas Reddy D, Sivasakthi K, Bhatnagar-Mathur P, Vadez V, Sharma KK. Evaluation of Sorghum [Sorghum bicolor (L.)] Reference Genes in Various Tissues and under Abiotic Stress Conditions for Quantitative Real-Time PCR Data Normalization. Front Plant Sci. 2016;7:529.
Article
Google Scholar
海姆MA, 雅各布M, 韦博M, 马丁C, 魏斯哈尔B, 贝利PC. 植物中的基本螺旋-环-螺旋转录因子家族:蛋白质结构和功能多样性的全基因组研究. Mol Biol Evol. 2003;20(5):735–47.
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2 (−Delta Delta C (T)) method. Methods. 2001;25(4):402–8. https://doi.org/10.1006/meth.2001.1262.
Article
CAS
PubMed
Google Scholar