|
Population
|
Traits1
|
CNVR ID2
|
Type3
|
Chromosome
|
Start (bp)
|
End (bp)
|
P-value4
|
Candidate genes
|
|---|
|
U.S. Duroc
|
ADG
|
CNVR 79
|
Gain
|
1
|
270,413,118
|
270,492,246
|
6.07E-03
| |
|
ADG
|
CNVR 122
|
Gain
|
2
|
105,908,671
|
106,135,493
|
6.39E-03
| |
|
ADG
|
CNVR 514
|
Loss
|
9
|
619,847
|
1,268,010
|
5.71E-03
| |
|
ADG; AGE
|
CNVR 83
|
Mixed
|
2
|
27,459
|
2,407,984
|
1.54E-03; 1.78E-03
|
PNPLA2
|
|
ADG; AGE
|
CNVR 85
|
Mixed
|
2
|
3,094,575
|
3,946,741
|
2.16E-04; 3.67E-04
| |
|
ADG; AGE
|
CNVR 152
|
Mixed
|
3
|
2,789,839
|
3,480,462
|
7.38E-05; 2.85E-04
|
SDK1
|
|
ADG; AGE
|
CNVR 315
|
Gain
|
5
|
52,276,104
|
52,737,350
|
2.01E-04; 4.78E-05
| |
|
ADG; AGE
|
CNVR 362
|
Mixed
|
6
|
66,808,707
|
67,379,563
|
5.20E-04; 1.59E-04
| |
|
ADG; AGE
|
CNVR 602
|
Mixed
|
11
|
39,893,652
|
40,308,946
|
5.02E-03; 5.20E-03
| |
|
ADG; AGE
|
CNVR 607
|
Gain
|
11
|
43,760,741
|
43,890,386
|
3.44E-03; 1.48E-03
| |
|
ADG; AGE
|
CNVR 637
|
Mixed
|
12
|
23,605,417
|
24,199,377
|
1.42E-03; 9.13E-04
| |
|
ADG; AGE
|
CNVR 732
|
Mixed
|
13
|
206,578,011
|
208,240,759
|
8.78E-06; 2.43E-04
|
PFKL
|
|
ADG; AGE
|
CNVR 852
|
Gain
|
15
|
122,779,236
|
122,863,462
|
3.73E-03; 3.98E-03
| |
|
AGE
|
CNVR 27
|
Mixed
|
1
|
68,740,759
|
69,522,447
|
5.25E-03
| |
|
AGE
|
CNVR 516
|
Mixed
|
9
|
3,080,614
|
3,416,559
|
4.85E-03
| |
|
AGE
|
CNVR 658
|
Gain
|
12
|
53,806,610
|
54,033,307
|
3.93E-03
|
PIK3R6, PIK3R5
|
|
Canadian Duroc
|
ADG; AGE
|
CNVR 90
|
Mixed
|
2
|
8,919,611
|
9,435,996
|
3.89E-03; 5.18E-03
|
BSCL2
|
|
ADG; AGE
|
CNVR 149
|
Mixed
|
3
|
162,027
|
2,071,648
|
1.51E-05; 3.10E-05
|
GPER1, PDGFA
|
|
ADG; AGE
|
CNVR 188
|
Gain
|
3
|
105,163,639
|
105,756,806
|
1.87E-03; 2.73E-03
| |
|
ADG; AGE
|
CNVR 267
|
Gain
|
4
|
108,348,774
|
108,589,640
|
4.96E-04; 4.82E-05
| |
|
ADG; AGE
|
CNVR 277
|
Gain
|
4
|
116,110,055
|
116,722,933
|
1.01E-03; 8.12E-04
| |
|
ADG; AGE
|
CNVR 354
|
Loss
|
6
|
46,826,412
|
47,252,470
|
4.05E-07; 8.81E-07
| |
|
ADG; AGE
|
CNVR 537
|
Mixed
|
9
|
61,615,730
|
62,034,708
|
7.70E-05; 1.43E-04
| |
|
ADG; AGE
|
CNVR 684
|
Mixed
|
13
|
32,709,504
|
32,901,267
|
1.44E-03; 1.32E-03
|
GNAI2
|
|
ADG; AGE
|
CNVR 789
|
Gain
|
14
|
121,605,565
|
121,639,735
|
3.28E-05; 1.90E-04
| |
- 1ADG Average daily gain at 100 kg; AGE Days to 100 kg. 2CNVRs ID in boldface represents the CNVR identified in both traits. 3Gain: duplications; Loss: deletions; Mixed: Gain and Loss occurring in the same region. 4P-value in boldface: genome-wide significant; P-value not in boldface: suggestive significant
