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Table 4 Significant CNVRs associated with growth traits in U.S. and Canadian Duroc pigs

From: Genome-wide detection of CNV regions and their potential association with growth and fatness traits in Duroc pigs

Population Traits1 CNVR ID2 Type3 Chromosome Start (bp) End (bp) P-value4 Candidate genes
U.S. Duroc ADG CNVR 79 Gain 1 270,413,118 270,492,246 6.07E-03  
ADG CNVR 122 Gain 2 105,908,671 106,135,493 6.39E-03  
ADG CNVR 514 Loss 9 619,847 1,268,010 5.71E-03  
ADG; AGE CNVR 83 Mixed 2 27,459 2,407,984 1.54E-03; 1.78E-03 PNPLA2
ADG; AGE CNVR 85 Mixed 2 3,094,575 3,946,741 2.16E-04; 3.67E-04  
ADG; AGE CNVR 152 Mixed 3 2,789,839 3,480,462 7.38E-05; 2.85E-04 SDK1
ADG; AGE CNVR 315 Gain 5 52,276,104 52,737,350 2.01E-04; 4.78E-05  
ADG; AGE CNVR 362 Mixed 6 66,808,707 67,379,563 5.20E-04; 1.59E-04  
ADG; AGE CNVR 602 Mixed 11 39,893,652 40,308,946 5.02E-03; 5.20E-03  
ADG; AGE CNVR 607 Gain 11 43,760,741 43,890,386 3.44E-03; 1.48E-03  
ADG; AGE CNVR 637 Mixed 12 23,605,417 24,199,377 1.42E-03; 9.13E-04  
ADG; AGE CNVR 732 Mixed 13 206,578,011 208,240,759 8.78E-06; 2.43E-04 PFKL
ADG; AGE CNVR 852 Gain 15 122,779,236 122,863,462 3.73E-03; 3.98E-03  
AGE CNVR 27 Mixed 1 68,740,759 69,522,447 5.25E-03  
AGE CNVR 516 Mixed 9 3,080,614 3,416,559 4.85E-03  
AGE CNVR 658 Gain 12 53,806,610 54,033,307 3.93E-03 PIK3R6, PIK3R5
Canadian Duroc ADG; AGE CNVR 90 Mixed 2 8,919,611 9,435,996 3.89E-03; 5.18E-03 BSCL2
ADG; AGE CNVR 149 Mixed 3 162,027 2,071,648 1.51E-05; 3.10E-05 GPER1, PDGFA
ADG; AGE CNVR 188 Gain 3 105,163,639 105,756,806 1.87E-03; 2.73E-03  
ADG; AGE CNVR 267 Gain 4 108,348,774 108,589,640 4.96E-04; 4.82E-05  
ADG; AGE CNVR 277 Gain 4 116,110,055 116,722,933 1.01E-03; 8.12E-04  
ADG; AGE CNVR 354 Loss 6 46,826,412 47,252,470 4.05E-07; 8.81E-07  
ADG; AGE CNVR 537 Mixed 9 61,615,730 62,034,708 7.70E-05; 1.43E-04  
ADG; AGE CNVR 684 Mixed 13 32,709,504 32,901,267 1.44E-03; 1.32E-03 GNAI2
ADG; AGE CNVR 789 Gain 14 121,605,565 121,639,735 3.28E-05; 1.90E-04  
  1. 1ADG Average daily gain at 100 kg; AGE Days to 100 kg. 2CNVRs ID in boldface represents the CNVR identified in both traits. 3Gain: duplications; Loss: deletions; Mixed: Gain and Loss occurring in the same region. 4P-value in boldface: genome-wide significant; P-value not in boldface: suggestive significant