Genome-wide characterization of microsatellite DNA in fishes: survey and analysis of their abundance and frequency in genome-specific regions

Table 6 Total numbers of Mono-, Di-, and Trinucleotide repeats in intergenic regions among 14 fish genomes

Repeated unit	O. latipes	D. rerio	O. niloticus	T. rubripes	E. lucius	L. oculatus	O. mykiss	C. carpio	I. punctatus	C. semilaevis	A. mexicanus	N. furzeri	P. reticulata	O. kisutch
A	7053	19,888	4667	4118	1523	3883	846	2603	7815	4738	7386	8467	5671	515
C	2058	1337	827	5367	1013	1170	740	108	919	921	867	7139	237	907
AC	2238	32,637	7840	15,342	5880	2113	3698	1873	13,324	2766	8393	48,648	3896	4585
AG	202	4756	1780	2175	1082	962	3056	445	6202	1023	7170	5467	705	3532
AT	741	19,891	2563	780	1020	683	979	693	3277	1346	9921	4626	684	606
CG	6	45	9	61	6	13	4	–	31	7	4	169	13	10
AAC	109	1260	438	255	49	537	190	79	866	281	92	797	133	64
AAG	117	476	296	167	19	146	70	51	500	376	291	2127	193	74
AAT	782	13,857	1526	673	369	4014	368	597	3336	621	2247	5103	699	170
ACC	74	95	65	250	58	230	30	5	87	30	104	566	25	28
ACG	160	103	131	421	6	68	5	16	44	373	108	576	90	68
ACT	22	214	52	290	48	86	197	26	298	84	269	837	25	234
AGC	167	57	74	335	2	42	12	5	16	173	144	39	65	8
AGG	349	364	345	653	70	224	187	11	183	340	175	734	143	197
ATC	180	214	367	467	143	326	422	56	782	162	715	2384	155	122
CCG	30	14	13	169	–	34	–	–	8	30	12	28	19	–

ISSN: 1471-2164