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Table 2 Gene Ontology analysis based on differential expression. The results for the top 10 processes are shown in the table

From: Transcriptomic coordination at hepatic steatosis indicates robust immune cell engagement prior to inflammation

GO biological process complete

Fold Enrichment

raw P-value

FDR

Steatosis vs Control

 actomyosin contractile ring organization (GO:0044837)

25.52

6.19E-04

2.21E-02

 actomyosin contractile ring assembly (GO:0000915)

25.52

6.19E-04

2.20E-02

 assembly of actomyosin apparatus involved in cytokinesis (GO:0000912)

25.52

6.19E-04

2.20E-02

 regulation of postsynaptic cytosolic calcium ion concentration (GO:0099566)

25.52

6.19E-04

2.19E-02

 positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation (GO:1905007)

25.52

6.19E-04

2.19E-02

 negative regulation of lipoprotein lipase activity (GO:0051005)

24.3

7.99E-05

4.58E-03

 glomerular visceral epithelial cell migration (GO:0090521)

21.26

9.13E-04

2.88E-02

 mitotic spindle midzone assembly (GO:0051256)

21.26

9.13E-04

2.88E-02

 mitotic spindle elongation (GO:0000022)

21.26

9.13E-04

2.87E-02

 regulation of epithelial to mesenchymal transition involved in endocardial cushion formation (GO:1905005)

21.26

9.13E-04

2.86E-02

Non steatosis vs Control

 regulation of intestinal cholesterol absorption (GO:0030300)

>  100

2.85E-06

8.98E-03

 regulation of intestinal lipid absorption (GO:1904729)

>  100

3.56E-06

8.01E-03

 regulation of intestinal absorption (GO:1904478)

91.62

7.54E-06

1.48E-02

 positive regulation of fatty acid biosynthetic process (GO:0045723)

56.38

2.80E-05

3.15E-02

 positive regulation of triglyceride metabolic process (GO:0090208)

50.55

3.79E-05

3.73E-02

 positive regulation of lipid catabolic process (GO:0050996)

47.29

4.56E-05

4.22E-02

 positive regulation of fatty acid metabolic process (GO:0045923)

42.49

3.26E-06

8.57E-03

 regulation of fatty acid metabolic process (GO:0019217)

20.57

4.96E-05

4.34E-02

 steroid biosynthetic process (GO:0006694)

19.94

5.57E-05

4.62E-02

 monocarboxylic acid biosynthetic process (GO:0072330)

16.4

1.52E-05

2.18E-02

Steatosis vs Non-Steatosis

 positive regulation of phagocytosis, engulfment (GO:0060100)

16

3

0.05

 positive regulation of membrane invagination (GO:1905155)

16

3

0.05

 animal organ regeneration (GO:0031100)

27

4

0.09

 regeneration (GO:0031099)

101

5

0.34

 regulation of cell death (GO:0010941)

1667

20

5.53

 regulation of programmed cell death (GO:0043067)

1504

18

4.99

 regulation of apoptotic process (GO:0042981)

1468

17

4.87

 regulation of cell population proliferation (GO:0042127)

1691

18

5.61

 cellular response to organic substance (GO:0071310)

1816

18

6.03

 response to organic substance (GO:0010033)

2529

22

8.4