Table 1 Number of reads assigned using BLAST with cockatiel samples and control sample
| 15AD75-1 | 15AD75-2 | 15AD75-3 | 15AD75-4 | Control | |
|---|---|---|---|---|---|
| Total reads | 8,842,628 | 8,160,360 | 8,503,438 | 14,041,743 | 18,929,276 |
|
Eukaryota (% total reads) |
8,420,210 (95.2) |
8,148,391 (99.9) |
8,354,957 (98.3) |
13,951,068 (99.4) |
18,839,539 (99.5) |
|
Bacteria (% total reads) |
76,253 (0.9) |
1,614 (<0.1) |
144,494 (1.7) |
80,294 (0.9) |
57,770 (0.3) |
|
Chlamydia psittaci (% bacteria) |
51,147 (67.1) |
109 (6.8) |
142,521 (98.6) | - | - |
|
Campylobacter jejuni (% bacteria) |
24,072 (31.6) |
1,387 (85.9) |
1,158 (0.8) |
78,015 (97.2) | - |
| Enterobacteriaceae | - | 32 | - | - | 2,823 |
| Clostridium colinum | 149 | - | - | - | - |
| Salmonella enterica | - | - | - | - | 19,573 |
| Raoultella ornithinolytica | - | - | - | - | 14,815 |
| Citrobacter sp. | - | - | - | - | 10,401 |
| Escherichia coli | - | - | - | - | 6,158 |
| Methylophaga sp. | - | - | - | - | 1,179 |
| Lysinibacillus sphaericus | - | - | - | - | 1,045 |
| etc. | - | - | - | - | 1,776 |
| unassigned | 885 | 118 | 815 | 2,279 | 3 |
|
Virus (% total reads) |
2,582 (<0.1) |
3,530 (<0.1) |
809 (<0.1) | - |
13,145 (<0.1) |
| retroviridae | 2,514 | 3,420 | 752 | - | - |
| hepatitis B virus | 4 | - | 57 | - | - |
| herpesvirus | - | 110 | - | - | - |
| Escherichia phage | - | - | - | - | 11,275 |
| Enterobacteria phage | - | - | - | - | 1,617 |
| Streptococcus phage | - | - | - | - | 222 |
| Rous sarcoma virus | - | - | - | - | 31 |
|
Unidentified (% total reads) |
343,083 (3.9) |
6,825 (0.1) |
3,178 (<0.1) |
10,381 (0.1) |
31,967 (0.17) |