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Table 1 Number of reads assigned using BLAST with cockatiel samples and control sample

From: Identification of Campylobacter jejuni and Chlamydia psittaci from cockatiel (Nymphicus hollandicus) using metagenomics

  15AD75-1 15AD75-2 15AD75-3 15AD75-4 Control
Total reads 8,842,628 8,160,360 8,503,438 14,041,743 18,929,276
Eukaryota
(% total reads)
8,420,210
(95.2)
8,148,391
(99.9)
8,354,957
(98.3)
13,951,068
(99.4)
18,839,539
(99.5)
Bacteria
(% total reads)
76,253
(0.9)
1,614
(<0.1)
144,494
(1.7)
80,294
(0.9)
57,770
(0.3)
Chlamydia psittaci
(% bacteria)
51,147
(67.1)
109
(6.8)
142,521
(98.6)
- -
Campylobacter jejuni
(% bacteria)
24,072
(31.6)
1,387
(85.9)
1,158
(0.8)
78,015
(97.2)
-
Enterobacteriaceae - 32 - - 2,823
Clostridium colinum 149 - - - -
Salmonella enterica - - - - 19,573
Raoultella ornithinolytica - - - - 14,815
Citrobacter sp. - - - - 10,401
Escherichia coli - - - - 6,158
Methylophaga sp. - - - - 1,179
Lysinibacillus sphaericus - - - - 1,045
etc. - - - - 1,776
unassigned 885 118 815 2,279 3
Virus
(% total reads)
2,582
(<0.1)
3,530
(<0.1)
809
(<0.1)
- 13,145
(<0.1)
retroviridae 2,514 3,420 752 - -
hepatitis B virus 4 - 57 - -
herpesvirus - 110 - - -
Escherichia phage - - - - 11,275
Enterobacteria phage - - - - 1,617
Streptococcus phage - - - - 222
Rous sarcoma virus - - - - 31
Unidentified
(% total reads)
343,083
(3.9)
6,825
(0.1)
3,178
(<0.1)
10,381
(0.1)
31,967
(0.17)