Campylobacter jejuni | Chlamydia psittaci | |||||
---|---|---|---|---|---|---|
assembler | IDBA-UD | MEGAHIT | metaSPAdes | IDBA-UD | MEGAHIT | metaSPAdes |
N50 | 669 | 681 | 630 | 1,057 | 1,104 | 974 |
longest contigs (bp) | 1,938 | 3,004 | 2,880 | 4,842 | 5,732 | 5,398 |
genome fraction (%) | 2.76 | 3.84 | 2.95 | 52.75 | 61.90 | 56.41 |
misassemblies | 0 | 4 | 0 | 11 | 13 | 1 |
mismatches per 100 kb | 1,462.90 | 1,395.01 | 1,383.12 | 39.13 | 45.75 | 40.68 |
indels per 100 kb | 20.71 | 18.83 | 15.40 | 3.23 | 3.72 | 8.62 |