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Table 4 Evry.Ler-1 ONT SVs (> 1 kb) overlapping Col-0 TAIR10.1 reference genes and TEs annotation features

From: Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

Features

noTE

TE

TOTAL (%)

noGENE

GENE

noGENE

GENE

Common SV

UU

79

59

93

179

410 (34.6)

MU

59

38

150

291

538 (45.5)

Specific SV

UN

28

28

71

109

236 (19.9)

SV number (%)

166 (14.0)

125 (10.6)

314 (26.5)

579 (48.9)

1184

TOTAL (%)

291 (24.6)

893 (75.4)

1184