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Fig. 2 | BMC Genomics

Fig. 2

From: FindIT2: an R/Bioconductor package to identify influential transcription factor and targets based on multi-omics data

Fig. 2

The functional test of the mmAnno module. A Distribution of the number of peaks linked to a gene inferred by mm_nearestGene. The result was plotted by plot_peakGeneAlias_summay. B Distribution of the number of peaks linked to a gene inferred by enhancerPromoterCor. The result was plotted by plot_peakGeneAlias_summay. The origin result is shown on the left. The filtered result is given on the right. Threshold, p-value < 0.01 and cor > 0.8. C Dot plot of the distal enhancer and promoter accessibility of peak-to-gene link located within 20 kb of AT1G80840. This plot is generated by plot_peakGeneCor. D The ATAC-seq track of AT1G80840. The genomic region is shown and the selected gene is highlighted in black. The locations of the ATAC-seq peaks are indicated by purple rectangles. The related distal enhancer or promoter are shadowed and promoter is marked by an asterisk

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BMC Genomics

ISSN: 1471-2164

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