Routray W, Orsat V. Blueberries and their anthocyanins: factors affecting biosynthesis and properties. Compr Rev Food Sci F. 2011;10(6):303–20.
Article
CAS
Google Scholar
Gao X, Walworth AE, Mackie C, Song GQ. Overexpression of blueberry FLOWERING LOCUS T is associated with changes in the expression of phytohormone-related genes in blueberry plants. Hortic Res. 2016;3:16053.
Article
PubMed
PubMed Central
CAS
Google Scholar
Hou Y, Zhai L, Li X, Xue Y, Wang J, Yang P, Cao C, Li H, Cui Y, Bian S. Comparative analysis of fruit ripening-related miRNAs and their targets in blueberry using small RNA and degradome sequencing. Int J Mol Sci. 2017;18(12):2767.
Article
PubMed Central
CAS
Google Scholar
Hou YM, Li HX, Zhai LL, Xie X, Li XY, Bian SM. Identification and functional characterization of the Aux/IAA gene VcIAA27 in blueberry. Plant Signal Behav. 2020;15(1):1700327.
Article
PubMed
CAS
Google Scholar
Li X, Hou Y, Xie X, Li H, Li X, Zhu Y, Zhai L, Zhang C, Bian S. A blueberry MIR156a-SPL12 module coordinates the accumulation of chlorophylls and anthocyanins during fruit ripening. J Exp Bot. 2020;71(19):5976–89.
Article
CAS
PubMed
Google Scholar
Lin T, Walworth A, Zong X, Danial GH, Tomaszewski EM, Callow P, Han X, Irina Zaharia L, Edger PP, Zhong GY, et al. VcRR2 regulates chilling-mediated flowering through expression of hormone genes in a transgenic blueberry mutant. Hortic Res. 2019;6:96.
Article
PubMed
PubMed Central
CAS
Google Scholar
Plunkett BJ, Espley RV, Dare AP, Warren BAW, Grierson ERP, Cordiner S, Turner JL, Allan AC, Albert NW, Davies KM, et al. MYBA From blueberry (Vaccinium Section Cyanococcus) is a subgroup 6 type R2R3MYB transcription factor that activates anthocyanin production. Front Plant Sci. 2018;9:1300.
Article
PubMed
PubMed Central
Google Scholar
Qi X, Ogden EL, Ehlenfeldt MK, Rowland LJ. Dataset of de novo assembly and functional annotation of the transcriptome of blueberry (Vaccinium spp.). Data Brief. 2019;25:104390.
Article
PubMed
PubMed Central
Google Scholar
Wang Y, Nie F, Shahid MQ, Baloch FS. Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset. BMC Plant Biol. 2020;20(1):250.
Article
PubMed
PubMed Central
CAS
Google Scholar
Zifkin M, Jin A, Ozga JA, Zaharia LI, Schernthaner JP, Gesell A, Abrams SR, Kennedy JA, Constabel CP. Gene expression and metabolite profiling of developing highbush blueberry fruit indicates transcriptional regulation of flavonoid metabolism and activation of abscisic acid metabolism. Plant Physiol. 2012;158(1):200–24.
Article
CAS
PubMed
Google Scholar
Lanctot A, Nemhauser JL. It’s Morphin’ time: how multiple signals converge on ARF transcription factors to direct development. Curr Opin Plant Biol. 2020;57:1–7.
Article
CAS
PubMed
PubMed Central
Google Scholar
Chandler JW. Auxin response factors. Plant Cell Environ. 2016;39(5):1014–28.
Article
CAS
PubMed
Google Scholar
Zhang MM, Zhang HK, Zhai JF, Zhang XS, Sang YL, Cheng ZJ. ARF4 regulates shoot regeneration through coordination with ARF5 and IAA12. Plant Cell Rep. 2021;40(2):315–25.
Article
CAS
PubMed
Google Scholar
Wang YC, Wang N, Xu HF, Jiang SH, Fang HC, Su MY, Zhang ZY, Zhang TL, Chen XS. Auxin regulates anthocyanin biosynthesis through the Aux/IAA-ARF signaling pathway in apple. Hortic Res. 2018;5:59.
Article
PubMed
PubMed Central
CAS
Google Scholar
Wang X, Yu R, Wang J, Lin Z, Han X, Deng Z, Fan L, He H, Deng XW, Chen H. The asymmetric expression of SAUR genes mediated by ARF7/19 promotes the gravitropism and phototropism of plant hypocotyls. Cell Rep. 2020;31(3):107529.
Article
CAS
PubMed
Google Scholar
Zhang CL, Wang GL, Zhang YL, Hu X, Zhou LJ, You CX, Li YY, Hao YJ. Apple SUMO E3 ligase MdSIZ1 facilitates SUMOylation of MdARF8 to regulate lateral root formation. New Phytol. 2021;229(4):2206–22.
Article
CAS
PubMed
Google Scholar
Lee K, Park OS, Seo PJ. Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation. Sci Signal. 2017;10(507):eaan0316.
Article
PubMed
CAS
Google Scholar
Lee K, Park OS, Seo PJ. JMJ30-mediated demethylation of H3K9me3 drives tissue identity changes to promote callus formation in Arabidopsis. Plant J. 2018;95(6):961–75.
Article
CAS
PubMed
Google Scholar
Su Z, Wang N, Hou Z, Li B, Li D, Liu Y, Cai H, Qin Y, Chen X. Regulation of female germline specification via small RNA mobility in Arabidopsis. Plant Cell. 2020;32(9):2842–54.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang X, Yan F, Tang Y, Yuan Y, Deng W, Li Z. Auxin response gene SlARF3 plays multiple roles in tomato development and is involved in the formation of epidermal cells and trichomes. Plant Cell Physiol. 2015;56(11):2110–24.
CAS
PubMed
Google Scholar
Herud O, Weijers D, Lau S, Jurgens G. Auxin responsiveness of the MONOPTEROS-BODENLOS module in primary root initiation critically depends on the nuclear import kinetics of the Aux/IAA inhibitor BODENLOS. Plant J. 2016;85(2):269–77.
Article
CAS
PubMed
Google Scholar
Ulmasov T, Hagen G, Guilfoyle TJ. ARF1, a transcription factor that binds to auxin response elements. Science. 1997;276(5320):1865–8.
Article
CAS
PubMed
Google Scholar
Luo XC, Sun MH, Xu RR, Shu HR, Wang JW, Zhang SZ. Genomewide identification and expression analysis of the ARF gene family in apple. J Genet. 2014;93(3):785–97.
Article
PubMed
Google Scholar
Wan S, Li W, Zhu Y, Liu Z, Huang W, Zhan J. Genome-wide identification, characterization and expression analysis of the auxin response factor gene family in Vitis vinifera. Plant Cell Rep. 2014;33(8):1365–75.
Article
CAS
PubMed
Google Scholar
Li SB, OuYang WZ, Hou XJ, Xie LL, Hu CG, Zhang JZ. Genome-wide identification, isolation and expression analysis of auxin response factor (ARF) gene family in sweet orange (Citrus sinensis). Front Plant Sci. 2015;6:119.
PubMed
PubMed Central
Google Scholar
Kalluri UC, Difazio SP, Brunner AM, Tuskan GA. Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. BMC Plant Biol. 2007;7:59.
Article
PubMed
PubMed Central
CAS
Google Scholar
Tang Y, Bao X, Liu K, Wang J, Zhang J, Feng Y, Wang Y, Lin L, Feng J, Li C. Genome-wide identification and expression profiling of the auxin response factor (ARF) gene family in physic nut. PLoS ONE. 2018;13(8):e0201024.
Article
PubMed
PubMed Central
CAS
Google Scholar
Pei Q, Li N, Yang Q, Wu T, Feng S, Feng X, Jing Z, Zhou R, Gong K, Yu T, et al. Genome-wide identification and comparative analysis of ARF family genes in three Apiaceae species. Front Genet. 2020;11:590535.
Article
PubMed
CAS
Google Scholar
Wu J, Wang F, Cheng L, Kong F, Peng Z, Liu S, Yu X, Lu G. Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum. Plant Cell Rep. 2011;30(11):2059–73.
Article
CAS
PubMed
Google Scholar
Wang D, Pei K, Fu Y, Sun Z, Li S, Liu H, Tang K, Han B, Tao Y. Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). Gene. 2007;394(1–2):13–24.
Article
CAS
PubMed
Google Scholar
Bargmann BO, Vanneste S, Krouk G, Nawy T, Efroni I, Shani E, Choe G, Friml J, Bergmann DC, Estelle M, et al. A map of cell type-specific auxin responses. Mol Syst Biol. 2013;9:688.
Article
CAS
PubMed
PubMed Central
Google Scholar
Roosjen M, Paque S, Weijers D. Auxin response factors: output control in auxin biology. J Exp Bot. 2018;69(2):179–88.
Article
CAS
PubMed
Google Scholar
Ulmasov T, Hagen G, Guilfoyle TJ. Activation and repression of transcription by auxin-response factors. Proc Natl Acad Sci U S A. 1999;96(10):5844–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kato H, Ishizaki K, Kouno M, Shirakawa M, Bowman JL, Nishihama R, Kohchi T. Auxin-mediated transcriptional system with a minimal set of components is critical for morphogenesis through the life cycle in Marchantia polymorpha. PLoS Genet. 2015;11(5):e1005084.
Article
PubMed
PubMed Central
CAS
Google Scholar
Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Nat Commun. 2018;9(1):4526.
Article
PubMed
PubMed Central
CAS
Google Scholar
Paya-Milans M, Nunez GH, Olmstead JW, Rinehart TA, Staton M. Regulation of gene expression in roots of the pH-sensitive Vaccinium corymbosum and the pH-tolerant Vaccinium arboreum in response to near neutral pH stress using RNA-Seq. BMC Genomics. 2017;18:580.
Article
PubMed
PubMed Central
CAS
Google Scholar
Okushima Y, Overvoorde PJ, Arima K, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Lui A, Nguyen D, et al. Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: Unique and overlapping functions of ARF7 and ARF19. Plant Cell. 2005;17(2):444–63.
Article
CAS
PubMed
PubMed Central
Google Scholar
Xu L, Wang D, Liu S, Fang Z, Su S, Guo C, Zhao C, Tang Y. Comprehensive atlas of wheat (Triticum aestivum L.) AUXIN RESPONSE FACTOR expression during male reproductive development and abiotic stress. Front Plant Sci. 2020;11:586144.
Article
PubMed
PubMed Central
Google Scholar
Nan Q, Qian D, Niu Y, He Y, Tong S, Niu Z, Ma J, Yang Y, An L, Wan D, et al. Plant actin-depolymerizing factors possess opposing biochemical properties arising from key amino acid changes throughout evolution. Plant Cell. 2017;29(2):395–408.
Article
CAS
PubMed
PubMed Central
Google Scholar
Liu S, Zhang Y, Feng Q, Qin L, Pan C, Lamin-Samu AT, Lu G. Tomato AUXIN RESPONSE FACTOR 5 regulates fruit set and development via the mediation of auxin and gibberellin signaling. Sci Rep. 2018;8(1):2971.
Article
PubMed
PubMed Central
CAS
Google Scholar
Chen M, Zhu X, Liu X, Wu C, Yu C, Hu G, Chen L, Chen R, Bouzayen M, Zouine M, et al. Knockout of Auxin Response Factor SlARF4 Improves Tomato Resistance to Water Deficit. Int J Mol Sci. 2021;22(7):3347.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kumar R, Tyagi AK, Sharma AK. Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development. Mol Genet Genomics. 2011;285(3):245–60.
Article
CAS
PubMed
Google Scholar
Dai X, Lu Q, Wang J, Wang L, Xiang F, Liu Z. MiR160 and its target genes ARF10, ARF16 and ARF17 modulate hypocotyl elongation in a light, BRZ, or PAC-dependent manner in Arabidopsis: miR160 promotes hypocotyl elongation. Plant Sci. 2021;303:110686.
Article
CAS
PubMed
Google Scholar
Yao X, Chen J, Zhou J, Yu H, Ge C, Zhang M, Gao X, Dai X, Yang ZN, Zhao Y. An essential role for miRNA167 in maternal control of embryonic and seed development. Plant Physiol. 2019;180(1):453–64.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gupta V, Estrada AD, Blakley I, Reid R, Patel K, Meyer MD, Andersen SU, Brown AF, Lila MA, Loraine AE. RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing. Gigascience. 2015;4:5.
Article
PubMed
PubMed Central
Google Scholar
Perez-Martin L, Busoms S, Tolra R, Poschenrieder C. Transcriptomics reveals fast changes in salicylate and jasmonate signaling pathways in shoots of carbonate-tolerant Arabidopsis thaliana under bicarbonate exposure. Int J Mol Sci. 2021;22(3):1226.
Article
CAS
PubMed
PubMed Central
Google Scholar
Costich DE, Ortiz R, Meagher TR, Bruederle LP, Vorsa N. Determination of ploidy level and nuclear DNA content in blueberry by flow cytometry. Theor Appl Genet. 1993;86(8):1001–6.
Article
CAS
PubMed
Google Scholar
Cannon SB, Mitra A, Baumgarten A, Young ND, May G. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol. 2004;4:10.
Article
PubMed
PubMed Central
Google Scholar
Yuan Y, Mei L, Wu M, Wei W, Shan W, Gong Z, Zhang Q, Yang F, Yan F, Zhang Q, et al. SlARF10, an auxin response factor, is involved in chlorophyll and sugar accumulation during tomato fruit development. J Exp Bot. 2018;69(22):5507–18.
CAS
PubMed
PubMed Central
Google Scholar
Yuan Y, Xu X, Gong Z, Tang Y, Wu M, Yan F, Zhang X, Zhang Q, Yang F, Hu X, et al. Auxin response factor 6A regulates photosynthesis, sugar accumulation, and fruit development in tomato. Hortic Res-England. 2019;6:85.
Article
CAS
Google Scholar
Devoghalaere F, Doucen T, Guitton B, Keeling J, Payne W, Ling TJ, Ross JJ, Hallett IC, Gunaseelan K, Dayatilake GA, et al. A genomics approach to understanding the role of auxin in apple (Malus x domestica) fruit size control. BMC Plant Biol. 2012;12:7.
Article
CAS
PubMed
PubMed Central
Google Scholar
Yue P, Lu Q, Liu Z, Lv T, Li X, Bu H, Liu W, Xu Y, Yuan H, Wang A. Auxin-activated MdARF5 induces the expression of ethylene biosynthetic genes to initiate apple fruit ripening. New Phytol. 2020;226(6):1781–95.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang T, Li W, Xie R, Xu L, Zhou Y, Li H, Yuan C, Zheng X, Xiao L, Liu K. CpARF2 and CpEIL1 interact to mediate auxin-ethylene interaction and regulate fruit ripening in papaya. Plant J. 2020;103(4):1318–37.
Article
CAS
PubMed
Google Scholar
Wang YC, Wang N, Xu HF, Jiang SH, Fang HC, Su MY, Zhang ZY, Zhang TL, Chen XS. Auxin regulates anthocyanin biosynthesis through the Aux/IAA-ARF signaling pathway in apple. Hortic Res-England. 2018;5:59.
Article
CAS
Google Scholar
Shavrukov Y, Hirai Y. Good and bad protons: genetic aspects of acidity stress responses in plants. J Exp Bot. 2016;67(1):15–30.
Article
CAS
PubMed
Google Scholar
Zhao S, Zhang M-L, Ma T-L, Wang Y. Phosphorylation of ARF2 relieves its repression of transcription of the K+ transporter gene HAK5 in response to low potassium stress. Plant Cell. 2016;28(12):3005–19.
Article
CAS
PubMed
PubMed Central
Google Scholar
Shen C, Yue R, Sun T, Zhang L, Yang Y, Wang H. OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.). Plant science. 2015;231:148–58.
Article
CAS
PubMed
Google Scholar
Andres-Robin A, Reymond MC, Dupire A, Battu V, Dubrulle N, Mouille G, Lefebvre V, Pelloux J, Boudaoud A, Traas J, et al. Evidence for the regulation of gynoecium morphogenesis by ETTIN via cell wall dynamics. Plant Physiol. 2018;178(3):1222–32.
Article
CAS
PubMed
PubMed Central
Google Scholar
Paya-Milans M, Nunez GH, Olmstead JW, Rinehart TA, Staton M. Regulation of gene expression in roots of the pH-sensitive Vaccinium corymbosum and the pH-tolerant Vaccinium arboreum in response to near neutral pH stress using RNA-Seq. BMC Genomics. 2017;18(1):580.
Article
PubMed
PubMed Central
CAS
Google Scholar
Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, He Y, Xia R. TBtools: An Integrative toolkit developed for interactive analyses of big biological data. Mol Plant. 2020;13(8):1194–202.
Article
CAS
PubMed
Google Scholar
Kumar S, Stecher G, Tamura K. MEGA7: Molecular evolutionary genetics analysis Version 7.0 for bigger datasets. Mol Biol Evol. 2016;33(7):1870–4.
Article
CAS
PubMed
PubMed Central
Google Scholar