Table 1 Degradome-verified targets of AM-responsive miRNAsc
miRNA | Gene | PFAM Descriptiona | Best BLASTP hit to NCBI SwissProt - Viridiplantae (E-value)b |
|---|---|---|---|
Pv40_miR408 | Pavir.6NG279000 | Cu_bind_like | Blue copper protein – Pisum sativum (2e-33) |
Pv40_miR408 | Pavir.6KG319400 | Cu_bind_like | Blue copper protein – Pisum sativum (2e-33) |
Pv83_miR528 | Pavir.2KG499500 | Cu_bind_like | Mavicyanin – Cucurbita pepo (6e-36) |
Pv83_miR528 | Pavir.2NG547000 | Cu_bind_like | Mavicyanin – Cucurbita pepo (6e-36) |
Pv50_miR397 | Pavir.5KG613400 | Cu-oxidase_2 | Laccase-3 – Oryza sativa (0.0) |
Pv40_miR408 | Pavir.1NG406200 | Cu_bind_like | Basic blue protein – Arabidopsis thaliana (1e-38) |
Pv50_miR397 | Pavir.5NG569300 | Cu-oxidase_2 | Laccase-3 – Oryza sativa (0.0) |
Pv7_miR398 | Pavir.9NG593500 | Sod_Cu | Superoxide dismutase [Cu-Zn] 4A – Zea mays (5e-100) |
Pv40_miR408 | Pavir.4NG301700 | Cu_bind_like | Blue copper protein – Pisum sativum (1e-41) |
Pv7_miR398 | Pavir.3KG207096 | COX5B | Cytochrome c oxidase subunit 5b-2, mitochondrial – Arabidopsis thaliana (2e-53) |
Pv96_miR827 | Pavir.7NG296900 | SPX | SPX domain-containing membrane protein OsI_17046 – Oryza sativa (4e-114) |
Pv50_miR397 | Pavir.9NG700300 | Cu-oxidase_2 | Laccase-10 – Oryza sativa (0.0) |
Pv50_miR397 | Pavir.5NG584800 | Cu-oxidase_2 | Laccase-12 – Oryza sativa (0.0) |
Pv50_miR397 | Pavir.7KG245300 | Iso_dh | Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial – Arabidopsis thaliana (0.0) |
Pv50_miR397 | Pavir.8NG004003 | Cu-oxidase_2 | Laccase-17 – Oryza sativa (0.0) |
Pv50_miR397 | Pavir.8KG177620 | Cu-oxidase_2 | Laccase-23 – Oryza sativa (0.0) |
Pv83_miR528 | Pavir.4KG213105 | Cu_bind_like | Blue copper protein – Pisum sativum (3e-09) |
Pv83_miR528 | Pavir.4NG131900 | Cu_bind_like | Blue copper protein – Pisum sativum (8e-10) |
Pv50_miR397 | Pavir.9KG330400 | Ribosomal_L18p | – |
Pv41_miR156 | Pavir.1NG540200 | Dev_Cell_Death | DCD domain-containing protein NRP – Arabidopsis thaliana (8e-17) |
Pv41_miR156 | Pavir.1KG509700 | Dev_Cell_Death | DCD domain-containing protein NRP – Arabidopsis thaliana (3e-16) |
Pv7_miR398 | Pavir.7NG297300 | HMA | Copper chaperone for superoxide dismutase, chloroplastic – Oryza sativa (1e-154) |
Pv26_Novel | Pavir.4KG252700 | #N/A | – |
Pv6_Novel | Pavir.9KG512500 | GRAS | Protein NODULATION SIGNALING PATHWAY 2 – Oryza sativa (0.0) |
Pv56_miR171 | Pavir.1NG390019 | GRAS | Scarecrow-like protein 6 – Arabidopsis thaliana (2e-91) |
Pv56_miR171 | Pavir.7KG283500 | GRAS | Scarecrow-like protein 6 – Arabidopsis thaliana (1e-92) |
Pv116_miR479 | Pavir.9KG512500 | GRAS | Protein NODULATION SIGNALING PATHWAY 2 – Oryza sativa (0.0) |
Pv116_miR479 | Pavir.9NG665600 | GRAS | Protein NODULATION SIGNALING PATHWAY 2 – Oryza sativa (0.0) |
Pv56_miR171 | Pavir.4NG003100 | GRAS | Scarecrow-like protein 6 – Arabidopsis thaliana (2e-82) |
Pv6_Novel | Pavir.9NG665600 | GRAS | Protein NODULATION SIGNALING PATHWAY 2 – Oryza sativa (0.0) |
Pv56_miR171 | Pavir.7NG276500 | GRAS | Scarecrow-like protein 6 – Arabidopsis thaliana (2e-95) |
Pv56_miR171 | Pavir.1KG431100 | GRAS | Scarecrow-like protein 6 – Arabidopsis thaliana (2e-92) |
Pv26_Novel | Pavir.3KG081543 | #N/A | – |
Pv26_Novel | Pavir.8KG229500 | Dirigent | Pterocapan synthase – Glycine max (2e-23) |
Pv26_Novel | Pavir.5KG344400 | DUF3511 | – |
Pv40_miR408 | Pavir.9NG638900 | FAE1_CUT1_RppA | 3-ketoacyl-CoA synthase 6 – Arabidopsis thaliana (0.0) |
Pv40_miR408 | Pavir.3KG377542 | #N/A | – |
Pv50_miR397 | Pavir.1KG421500 | MIP | Aquaporin TIP2–2 – Zea mays (3e-163) |