Table 2 List of genes in the chloroplast genomes of the examined Ferula species

Photosynthesis

Subunits of photosystem I

psaA, psaB, psaC, psaI, psaJ

Subunits of photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Subunits of NADH dehydrogenase

ndhA^a, ndhB^ad, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Subunits of cytochrome b/f complex

petA, petB^a, petD, petG, petL, petN

Subunits of ATP synthase

atpA, atpB, atpE, atpF^a, atpH, atpI

Large subunit of rubisco

rbcL

Subunits photochlorophyllide reductase

-

Self-replication

Proteins of large ribosomal subunit

rpl14, rpl16^a, rpl2^ad, rpl20, rpl22, rpl23^d, rpl32, rpl33, rpl36

Proteins of small ribosomal subunit

rps11, rps12^bd, rps14, rps15, rps16^a, rps18, rps19, rps2, rps3, rps4, rps7^d, rps8

Subunits of RNA polymerase

rpoA, rpoB, rpoC1^a, rpoC2

Ribosomal RNAs

rrn16^d, rrn23^d, rrn4.5^d, rrn5^d

Transfer RNAs

trnA-UGC^ad, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-UCC^a, trnH-GUG, trnI-CAU^d, trnI-GAU^ad, trnK-UUU^a, trnL-CAA^d, trnL-UAA^a, trnL-UAG, trnM-CAU, trnN-GUU^d, trnP-UGG, trnQ-UUG, trnR-ACG^d, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC^d, trnV-UAC^a, trnW-CCA, trnY-GUA, trnfM-CAU

Other genes

Maturase

matK

Protease

clpP^b

Envelope membrane protein

cemA

Acetyl-CoA carboxylase

accD

c-type cytochrome synthesis gene

ccsA

Translation initiation factor

infA

other

-

Genes of unknown function

Conserved hypothetical chloroplast ORF

ycf1, ^cycf1, ycf15^d, ycf2^d, ycf3^b, ycf4