Koszalka P, Subbarao K, Baz M. Preclinical and clinical developments for combination treatment of influenza. PLoS Pathog. 2022;18(5):e1010481. https://doi.org/10.1371/journal.ppat.1010481.
Article
CAS
PubMed
PubMed Central
Google Scholar
Petrova VN, Russell CA. The evolution of seasonal influenza viruses. Nat Rev Microbiol. 2018;16(1):47–60. https://doi.org/10.1038/nrmicro.2017.118.
Article
CAS
PubMed
Google Scholar
Lozano R, Naghavi M, Foreman K, et al. Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010. Lancet. 2012;380(9859):2095–128. https://doi.org/10.1016/S0140-6736(12)61728-0.
Article
PubMed
Google Scholar
Uyeki TM. Influenza. Annals of internal medicine. 2017;167(5):ITC33–48. https://doi.org/10.7326/AITC201709050.
Article
PubMed
Google Scholar
Influenza DD. Indian J Pediatr. 2020;87(10):828–32. https://doi.org/10.1007/s12098-020-03214-1.
Article
Google Scholar
Dominguez-Cherit G, De la Torre A, Rishu A, et al. Influenza A (H1N1pdm09)-Related Critical Illness and Mortality in Mexico and Canada, 2014. Crit Care Med. 2016;44(10):1861–70. https://doi.org/10.1097/CCM.0000000000001830.
Article
PubMed
Google Scholar
Oliveira EC, Marik PE, Colice G. Influenza pneumonia: a descriptive study. Chest. 2001;119(6):1717–23. https://doi.org/10.1378/chest.119.6.1717.
Article
CAS
PubMed
Google Scholar
Chen L, Han X, Li Y, Zhang C, Xing X. Flu-IV score: a predictive tool for assessing the risk of invasive mechanical ventilation in patients with influenza-related pneumonia. BMC Pulm Med. 2022;22(1):47. https://doi.org/10.1186/s12890-022-01833-2.
Article
CAS
PubMed
PubMed Central
Google Scholar
Malik G, Zhou Y. Innate Immune Sensing of Influenza A Virus. Viruses. 2020;12(7):755. https://doi.org/10.3390/v12070755.
Article
CAS
PubMed Central
Google Scholar
Tomic A, Pollard AJ, Davis MM. Systems Immunology: Revealing Influenza Immunological Imprint. Viruses. 2021;13(5):948. https://doi.org/10.3390/v13050948.
Article
PubMed
PubMed Central
Google Scholar
Ibrahim B, McMahon DP, Hufsky F, et al. A new era of virus bioinformatics. Virus Res. 2018;251:86–90. https://doi.org/10.1016/j.virusres.2018.05.009.
Article
CAS
PubMed
Google Scholar
Zou J, Wang E. Cancer Biomarker Discovery for Precision Medicine: New Progress. Curr Med Chem. 2019;26(42):7655–71. https://doi.org/10.2174/0929867325666180718164712.
Article
CAS
PubMed
Google Scholar
Mathew NR, Jayanthan JK, Smirnov IV, et al. Single-cell BCR and transcriptome analysis after influenza infection reveals spatiotemporal dynamics of antigen-specific B cells. Cell Rep. 2021;35(12):109286. https://doi.org/10.1016/j.celrep.2021.109286.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tang BM, Shojaei M, Teoh S, et al. Neutrophils-related host factors associated with severe disease and fatality in patients with influenza infection. Nat Commun. 2019;10(1):3422. https://doi.org/10.1038/s41467-019-11249-y.
Article
CAS
PubMed
PubMed Central
Google Scholar
Parnell GP, McLean AS, Booth DR, et al. A distinct influenza infection signature in the blood transcriptome of patients with severe community-acquired pneumonia. Crit Care. 2012;16(4):R157. https://doi.org/10.1186/cc11477.
Article
PubMed
PubMed Central
Google Scholar
Hu G, Grover CE, Arick MA, Liu M, Peterson DG, Wendel JF. Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids. Brief Bioinform. 2021;22(2):1819–35. https://doi.org/10.1093/bib/bbaa035.
Article
CAS
PubMed
Google Scholar
Nomiri S, Karami H, Baradaran B, et al. Exploiting systems biology to investigate the gene modules and drugs in ovarian cancer: A hypothesis based on the weighted gene co-expression network analysis. Biomed Pharmacother. 2022;146:112537. https://doi.org/10.1016/j.biopha.2021.112537.
Article
CAS
PubMed
Google Scholar
Tang BM, Shojaei M, Parnell GP, et al. A novel immune biomarker IFI27 discriminates between influenza and bacteria in patients with suspected respiratory infection. Eur Respir J. 2017;49(6):1602098. https://doi.org/10.1183/13993003.02098-2016.
Article
CAS
PubMed
Google Scholar
Nguyen THO, Koutsakos M, van de Sandt CE, et al. Immune cellular networks underlying recovery from influenza virus infection in acute hospitalized patients. Nat Commun. 2021;12(1):2691. https://doi.org/10.1038/s41467-021-23018-x.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zerbib Y, Jenkins EK, Shojaei M, et al. Pathway mapping of leukocyte transcriptome in influenza patients reveals distinct pathogenic mechanisms associated with progression to severe infection. BMC Med Genomics. 2020;13(1):28. https://doi.org/10.1186/s12920-020-0672-7.
Article
CAS
PubMed
PubMed Central
Google Scholar
Dunning J, Blankley S, Hoang LT, et al. Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza. Nat Immunol. 2018;19(6):625–35. https://doi.org/10.1038/s41590-018-0111-5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lalueza A, Folgueira D, Diaz-Pedroche C, et al. Severe lymphopenia in hospitalized patients with influenza virus infection as a marker of a poor outcome. Infect Dis. 2019;51(7):543–6. https://doi.org/10.1080/23744235.2019.1598572.
Article
Google Scholar
Fox A, Le NM, Horby P, et al. Severe pandemic H1N1 2009 infection is associated with transient NK and T deficiency and aberrant CD8 responses. PLoS ONE. 2012;7(2):e31535. https://doi.org/10.1371/journal.pone.0031535.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gonzalez Y, Juarez E, Carranza C, Sada E, Pedraza-Sanchez S, Torres M. Diminished effector and memory CD8+ circulating T lymphocytes in patients with severe influenza caused by the AH1N1 pdm09 virus. Virology. 2017;500:139–48. https://doi.org/10.1016/j.virol.2016.10.016.
Article
CAS
PubMed
Google Scholar
Boonnak K, Vogel L, Feldmann F, Feldmann H, Legge KL, Subbarao K. Lymphopenia associated with highly virulent H5N1 virus infection due to plasmacytoid dendritic cell-mediated apoptosis of T cells. J Immunol. 2014;192(12):5906–12. https://doi.org/10.4049/jimmunol.1302992.
Article
CAS
PubMed
Google Scholar
Yu J, Li H, Jia J, et al. Pandemic influenza A (H1N1) virus causes abortive infection of primary human T cells. Emerg Microbes Infect. 2022;11(1):1191–204. https://doi.org/10.1080/22221751.2022.2056523.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tate MD, Brooks AG, Reading PC. The role of neutrophils in the upper and lower respiratory tract during influenza virus infection of mice. Respir Res. 2008;9:57. https://doi.org/10.1186/1465-9921-9-57.
Article
CAS
PubMed
PubMed Central
Google Scholar
Narasaraju T, Yang E, Samy RP, et al. Excessive neutrophils and neutrophil extracellular traps contribute to acute lung injury of influenza pneumonitis. Am J Pathol. 2011;179(1):199–210. https://doi.org/10.1016/j.ajpath.2011.03.013.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tumpey TM, Garcia-Sastre A, Taubenberger JK, et al. Pathogenicity of influenza viruses with genes from the 1918 pandemic virus: functional roles of alveolar macrophages and neutrophils in limiting virus replication and mortality in mice. J Virol. 2005;79(23):14933–44. https://doi.org/10.1128/JVI.79.23.14933-14944.2005.
Article
CAS
PubMed
PubMed Central
Google Scholar
Yipp BG, Kubes P. NETosis: how vital is it? Blood. 2013;122(16):2784–94. https://doi.org/10.1182/blood-2013-04-457671.
Article
CAS
PubMed
Google Scholar
Narayana Moorthy A, Narasaraju T, Rai P, et al. In vivo and in vitro studies on the roles of neutrophil extracellular traps during secondary pneumococcal pneumonia after primary pulmonary influenza infection. Front Immunol. 2013;4:56. https://doi.org/10.3389/fimmu.2013.00056.
Article
CAS
PubMed
PubMed Central
Google Scholar
Siegler BH, Altvater M, Thon JN, et al. Postoperative abdominal sepsis induces selective and persistent changes in CTCF binding within the MHC-II region of human monocytes. PLoS ONE. 2021;16(5):e0250818. https://doi.org/10.1371/journal.pone.0250818.
Article
CAS
PubMed
PubMed Central
Google Scholar
Siegler BH, Uhle F, Lichtenstern C, et al. Impact of human sepsis on CCCTC-binding factor associated monocyte transcriptional response of Major Histocompatibility Complex II components. PLoS ONE. 2018;13(9):e0204168. https://doi.org/10.1371/journal.pone.0204168.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lukaszewicz AC, Grienay M, Resche-Rigon M, et al. Monocytic HLA-DR expression in intensive care patients: interest for prognosis and secondary infection prediction. Crit Care Med. 2009;37(10):2746–52. https://doi.org/10.1097/CCM.0b013e3181ab858a.
Article
CAS
PubMed
Google Scholar
Fumeaux T, Pugin J. Role of interleukin-10 in the intracellular sequestration of human leukocyte antigen-DR in monocytes during septic shock. Am J Respir Crit Care Med. 2002;166(11):1475–82. https://doi.org/10.1164/rccm.200203-217OC.
Article
PubMed
Google Scholar
Cazalis MA, Friggeri A, Cave L, et al. Decreased HLA-DR antigen-associated invariant chain (CD74) mRNA expression predicts mortality after septic shock. Crit Care. 2013;17(6):R287. https://doi.org/10.1186/cc13150.
Article
PubMed
PubMed Central
Google Scholar
Pillai PS, Molony RD, Martinod K, et al. Mx1 reveals innate pathways to antiviral resistance and lethal influenza disease. Science. 2016;352(6284):463–6. https://doi.org/10.1126/science.aaf3926.
Article
CAS
PubMed
PubMed Central
Google Scholar
Pinto B, Deo P, Sharma S, Syal A, Sharma A. Expanding spectrum of DADA2: a review of phenotypes, genetics, pathogenesis and treatment. Clin Rheumatol. 2021;40(10):3883–96. https://doi.org/10.1007/s10067-021-05711-w.
Article
PubMed
Google Scholar
Caorsi R, Penco F, Grossi A, et al. ADA2 deficiency (DADA2) as an unrecognised cause of early onset polyarteritis nodosa and stroke: a multicentre national study. Ann Rheum Dis. 2017;76(10):1648–56. https://doi.org/10.1136/annrheumdis-2016-210802.
Article
CAS
PubMed
Google Scholar
Belot A, Wassmer E, Twilt M, et al. Mutations in CECR1 associated with a neutrophil signature in peripheral blood. Pediatr Rheumatol Online J. 2014;12:44. https://doi.org/10.1186/1546-0096-12-44.
Article
PubMed
PubMed Central
Google Scholar