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Table 1 Selected significantly differentially expressed DNA damage repair genes: gene function and gene expression levels (shown as Z-scores) among the male meiocytes of temperate maize lines B73 and Mo17 and the tropical maize line CML228

From: Comparison of meiotic transcriptomes of three maize inbreds with different origins reveals differences in cell cycle and recombination

Gene name

Gene ID

Enriched in GO analysis

CML228

Mo17

B73

Gene function

SRR5930250

SRR14498235

SRR14498234

SRR5931453

SRR5931450

SRR650380

SRR650383

 

Zyp1

Zm00001eb423930

-

1.40

0.86

0.89

-0.79

-0.88

-0.81

-0.67

Chromosome synapsis

Dmc1

Zm00001eb163340

-

0.10

0.61

1.44

-1.13

-1.16

-0.61

0.74

Homology search

Mer3

Zm00001eb184840

-

0.98

0.15

0.91

-1.32

-1.35

-0.15

0.77

Meiosis-specific DNA helicase

Zip4

Zm00001eb145140

Up

-0.29

1.13

1.71

-0.81

-0.75

-0.59

-0.39

Chromosome synapsis

Rad51d

Zm00001eb329200

-

-0.58

0.39

0.88

-1.10

-1.36

0.62

1.13

Homology search

Rad51e

Zm00001eb355220

-

0.73

0.09

1.29

-1.35

-1.19

-0.26

0.69

Homology search

Brca2

Zm00001eb419130

-

1.67

0.35

0.43

-1.29

-0.94

-0.53

0.30

Homology search

Tti2

Zm00001eb226270

-

1.24

0.33

0.91

-1.12

-1.42

-0.31

0.36

Stabilization of phosphatidylinositol 3-kinase-related kinases

Mlh1*

Zm00001eb362590

Up

1.19

-0.11

0.76

-0.92

-1.36

-0.55

1.00

Interference crossover formation

Mis12b

Zm00001eb065850

Up

0.29

0.98

1.64

-0.89

-0.93

-0.62

-0.46

Kinetochore protein

e2f12

Zm00001eb280090

-

0.46

-0.19

-0.22

-1.05

-1.14

0.35

1.78

Suppression of endocycle

e2f13

Zm00001eb194770

-

0.50

0.76

1.69

-0.85

-0.88

-0.83

-0.39

Suppression of endocycle

Atr1

Zm00001eb228310

Down

-1.12

-0.93

-0.63

1.09

1.44

-0.24

0.40

Regulating Dmc1 loading

Phr1*

Zm00001eb015750

-

-0.39

-0.96

-1.30

0.92

1.01

-0.39

1.12

DNA repair

Mus81 homolog2*

Zm00001eb141330

-

-0.27

-1.24

-0.94

1.07

1.41

-0.45

0.43

Noninterference crossover junction endonuclease

Mpk3

Zm00001eb013100

Down

-0.56

-0.71

-0.77

1.30

1.58

-0.25

-0.59

Cell cycle progression upon UVB stress

  1. * not differentially expressed, but nearly significant