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Fig. 2 | BMC Genomics

Fig. 2

From: Genome sequencing and comparative genomic analysis of bovine mastitis-associated Staphylococcus aureus strains from India

Fig. 2

The genome-wide SNP-based maximum likelihood phylogenetic tree of mastitis-associated S. aureus isolates obtained from India. The S. aureus strain K5 (NCBI accession No: NZ_CP020656.1) was used as the reference genome to map and screen the SNPs. The phylogenetic tree was constructed using The CSI Phylogeny v1.4 and visualized using iTOL v6. The scale bar indicates 0.1 substitutions per nucleotide position. The strain names, sequence types (STs), clonal complexes (CCs), spa types, clinical (CL) or subclinical (SCL) mastitis, and five different states in India (GJ-Gujarat, KA-Karnataka, ML-Meghalaya, TG-Telangana, UP-Uttar Pradesh) from where the strains were isolated are indicated, respectively

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BMC Genomics

ISSN: 1471-2164

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