Table 1 The statistical metrics for the RNA libraries. The sequencing and mapping results for the 11 RNA-seq libraries: CTR (1–5) refers to the controls; PA-E (1–6) refers to the pulmonary arteries affected by embolism. The uniquely-mapped values were related to the reads mapped to only one location of the porcine genome. The multi-mapped values were assigned to reads aligned to more than one locus on the reference genome. The raw, trimmed and mapped values denote in millions
CTR1 | CTR2 | CTR3 | CTR4 | CTR5 | PA-E1 | PA-E2 | PA-E3 | PA-E4 | PA-E5 | PA-E6 | |
|---|---|---|---|---|---|---|---|---|---|---|---|
Raw reads | 62.53 | 65.97 | 75.22 | 63.21 | 65.61 | 81.30 | 81.01 | 71.96 | 73.29 | 70.29 | 80.90 |
Trimmed reads | 58.80 | 59.76 | 69.55 | 56.96 | 60.07 | 74.05 | 74.91 | 65.52 | 68.14 | 64.39 | 74.00 |
Percentage of trimmed reads | 94.05% | 90.59% | 92.47% | 90.11% | 91.55% | 91.08% | 92.47% | 91.05% | 92.97% | 91.61% | 91.48% |
Mapped | 57.80 | 58.96 | 68.74 | 56.38 | 59.49 | 73.16 | 74.16 | 64.88 | 67.37 | 63.71 | 73.18 |
Uniquely mapped | 56.16 | 57.52 | 66.81 | 55.16 | 58.16 | 71.17 | 72.30 | 63.30 | 65.76 | 62.23 | 71.33 |
Percentage of uniquely mapped reads | 97.16% | 97.57% | 97.19% | 97.82% | 97.78% | 97.27% | 97.49% | 97.58% | 97.62% | 97.68% | 97.47% |