Table 1 Summary features of complete chloroplast genomes of Zingiber species
Genome feature | Zingiber cochleariforme | Zingiber densissimum | Zingiber ellipticum | Zingiber flavomaculosum | Zingiber koshunense | Zingiber leptorrhizum | Zingiber neotruncatum |
|---|---|---|---|---|---|---|---|
Genome size (bp) | 163,665 | 163,607 | 163,455 | 163,298 | 163,394 | 162,956 | 162,484 |
LSC length (bp) | 88,167 | 87,981 | 87,946 | 88,124 | 87,785 | 87,430 | 86,712 |
SSC length (bp) | 15,788 | 15,846 | 15,771 | 15,644 | 15,835 | 15,722 | 15,812 |
IR length (bp) | 29,855 | 29,890 | 29,869 | 29,765 | 29,887 | 29,902 | 29,957 |
GC content (%) | |||||||
 Total genome | 36.04% | 36.08% | 36.16% | 36.12% | 36.07% | 36.18% | 36.13% |
 LSC | 33.78% | 33.88% | 33.92% | 33.88% | 33.84% | 34.02% | 33.95% |
 SSC | 29.57% | 29.40% | 29.73% | 29.68% | 29.49% | 29.61% | 29.29% |
 IR | 41.09% | 41.07% | 41.16% | 41.14% | 41.07% | 41.07% | 41.13% |
Genes (total/different) | 133/113 | 133/113 | 133/113 | 133/113 | 133/113 | 133/113 | 133/113 |
CDS (total/different) | 87/79 | 87/79 | 87/79 | 87/79 | 87/79 | 87/79 | 87/79 |
tRNA (total/different) | 38/30 | 38/30 | 38/30 | 38/30 | 38/30 | 38/30 | 38/30 |
rRNA (total/different) | 8/4 | 8/4 | 8/4 | 8/4 | 8/4 | 8/4 | 8/4 |
Genes with introns | 18 | 18 | 18 | 18 | 18 | 18 | 18 |
Different CDS in LSC | 61 | 61 | 61 | 61 | 61 | 61 | 61 |
Different CDS in SSC | 12 | 12 | 12 | 12 | 12 | 12 | 12 |
Different CDS in IRB | 8 | 8 | 8 | 8 | 8 | 8 | 8 |
Different CDS in IRA | 8 | 8 | 8 | 8 | 8 | 8 | 8 |
GenBank accession | OP869986 | OP869975 | OP869976 | OP869987 | OP869977 | OP869984 | OP869978 |
Genome feature | Zingiber orbiculatum | Zingiber purpureum | Zingiber smilesianum | Zingiber striolatum | Zingiber xishuangbannaense | Zingiber yingjiangense | Zingiber Montanum |
|---|---|---|---|---|---|---|---|
Genome size (bp) | 163,527 | 163,135 | 163,640 | 163,711 | 163,487 | 163,623 | 163,476 |
LSC length (bp) | 88,032 | 87,730 | 88,142 | 88,026 | 88,199 | 87,957 | 87,797 |
SSC length (bp) | 15,829 | 15,795 | 15,782 | 15,871 | 15,498 | 15,798 | 15,995 |
IR length (bp) | 29,833 | 29,805 | 29,858 | 29,907 | 29,895 | 29,934 | 29,842 |
GC content (%) | |||||||
 Total genome | 36.06% | 35.89% | 36.07% | 36.03% | 36.04% | 36.08% | 35.90% |
 LSC | 33.85% | 33.66% | 33.84% | 33.82% | 33.82% | 33.88% | 33.68% |
 SSC | 29.39% | 29.26% | 29.53% | 29.35% | 29.71% | 29.45% | 29.27% |
 IR | 41.10% | 40.95% | 41.09% | 41.06% | 40.95% | 41.05% | 40.93% |
Genes (total/different) | 133/113 | 133/113 | 133/113 | 133/113 | 133/113 | 133/113 | 133/113 |
CDS (total/different) | 87/79 | 87/79 | 87/79 | 87/79 | 87/79 | 87/79 | 87/79 |
tRNA (total/different) | 38/30 | 38/30 | 38/30 | 38/30 | 38/30 | 38/30 | 38/30 |
rRNA (total/different) | 8/4 | 8/4 | 8/4 | 8/4 | 8/4 | 8/4 | 8/4 |
Genes with introns | 18 | 18 | 18 | 18 | 18 | 18 | 18 |
Different CDS in LSC | 61 | 61 | 61 | 61 | 61 | 61 | 61 |
Different CDS in SSC | 12 | 12 | 12 | 12 | 12 | 12 | 12 |
Different CDS in IRB | 8 | 8 | 8 | 8 | 8 | 8 | 8 |
Different CDS in IRA | 8 | 8 | 8 | 8 | 8 | 8 | 8 |
GenBank accession | OP869979 | OP869980 | OP869981 | ON646165 | OP869982 | OP869983 | OP869985 |