Table 1 Quality assessments of the original and Hi-C integrated genome assemblies of T. circumcincta
Parameters | Original assembly | Purged Hi-C assemblya | Chromosomes onlyb |
|---|---|---|---|
Number of scaffolds | 81,730 | 52,860 | 6 |
Total size of scaffolds (bp) | 700,607,159 | 614,147,289 | 363,201,533 |
Longest scaffold (bp) | 1,473,920 | 66,586,561 | 66,586,561 |
N50 scaffold length (bp) count | 47,089 | 57,133,369 | 62,733,602 |
L50 scaffold count | 3152 | 5 | 3 |
Number of contigs | 213,313 | 175,861 | 76,733 |
Longest contig (bp) | 98,345 | 98,345 | 98,345 |
N50 contig length (bp) | 3624 | 4009 | 5700 |
L50 contig count | 40,623 | 32,178 | 14,421 |
BUSCO assessment c | |||
Complete (single-copy + duplicated) | 2099 (67%) | 2112 (67.5%) | 1840 (58.8%) |
Complete and single-copy | 1835 (58.6%) | 1978 (63.2%) | 1821 (58.2%) |
Complete and duplicated | 264 (8.4%) | 134 (4.3%) | 19 (0.6%) |
Fragmented | 350 (11.2%) | 358 (11.4%) | 269 (8.6%) |
Missing | 682 (21.8%) | 661 (21.1%) | 1022 (32.6%) |