Table 2 Comparison of genome annotations in the purged, Hi-C integrated and original genome assemblies of T. circumcincta
Parameters | Purged Hi-C assembly | Original assembly |
|---|---|---|
mRNAs (n) | 30,055 | 39,896 |
Genes (n) | 28,082 | 37,276 |
Exons (n) | 239,113 | 281,766 |
CDS (n) | 239,106 | 281,759 |
Introns (n) | 197,880 | 231,167 |
Start Codon (n) | 26,422 | 32,685 |
Stop codon (n) | 27,090 | 33,400 |
BUSCO assessment* | ||
Complete (single-copy + duplicated) | 2402 (76.7%) | 2409 (76.9%) |
Complete and single-copy | 1834 (58.6%) | 1816 (58.0%) |
Complete and duplicated | 568 (18.1%) | 593 (18.9%) |
Fragmented | 239 (7.6%) | 250 (8%) |
Missing | 490 (15.7%) | 472 (15.1%) |