Volume 12 Supplement 3

Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Computational Biology


Edited by Christian Schoenbach, Sheila Nathan, Tin Wee Tan and Shoba Ranganathan

Asia Pacific Bioinformatics Network (APBioNet) Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011). Go to conference site.

Kuala Lumpur, Malaysia

30 November - 2 December 2011

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  1. Introduction

    InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia

    In 2009 the International Society for Computational Biology (ISCB) started to roll out regional bioinformatics conferences in Africa, Latin America and Asia. The open and competitive bid for the first meeting ...

    Christian Schönbach, Tin Wee Tan, Janet Kelso, Burkhard Rost, Sheila Nathan and Shoba Ranganathan

    BMC Genomics 2011 12(Suppl 3):S1

    Published on: 30 November 2011

  2. Proceedings

    DetoxiProt: an integrated database for detoxification proteins

    Detoxification proteins are a class of proteins for degradation and/or elimination of endogenous and exogenous toxins or medicines, as well as reactive oxygen species (ROS) produced by these materials. Most of...

    Zhen Yang, Ying Yu, Lei Yao, Guangui Li, Lin Wang, Yiyao Hu, Haibin Wei, Li Wang, Riadh Hammami, Roxanne Razavi, Yang Zhong and Xufang Liang

    BMC Genomics 2011 12(Suppl 3):S2

    Published on: 30 November 2011

  3. Proceedings

    Liverome: a curated database of liver cancer-related gene signatures with self-contained context information

    Hepatocellular carcinoma (HCC) is the fifth most common cancer worldwide. A number of molecular profiling studies have investigated the changes in gene and protein expression that are associated with various c...

    Langho Lee, Kai Wang, Gang Li, Zhi Xie, Yuli Wang, Jiangchun Xu, Shaoxian Sun, David Pocalyko, Jong Bhak, Chulhong Kim, Kee-Ho Lee, Ye Jin Jang, Young Il Yeom, Hyang-Sook Yoo and Seungwoo Hwang

    BMC Genomics 2011 12(Suppl 3):S3

    Published on: 30 November 2011

  4. Proceedings

    INDUS - a composition-based approach for rapid and accurate taxonomic classification of metagenomic sequences

    Taxonomic classification of metagenomic sequences is the first step in metagenomic analysis. Existing taxonomic classification approaches are of two types, similarity-based and composition-based. Similarity-ba...

    Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Rachamalla Maheedhar Reddy, Chennareddy Venkata Siva Kumar Reddy, Nitin Kumar Singh and Sharmila S Mande

    BMC Genomics 2011 12(Suppl 3):S4

    Published on: 30 November 2011

  5. Proceedings

    Profiling ascidian promoters as the primordial type of vertebrate promoter

    CpG islands are observed in mammals and other vertebrates, generally escape DNA methylation, and tend to occur in the promoters of widely expressed genes. Another class of promoter has lower G+C and CpG conten...

    Kohji Okamura, Riu Yamashita, Noriko Takimoto, Koki Nishitsuji, Yutaka Suzuki, Takehiro G Kusakabe and Kenta Nakai

    BMC Genomics 2011 12(Suppl 3):S7

    Published on: 30 November 2011

  6. Proceedings

    Perfect Hamming code with a hash table for faster genome mapping

    With the advent of next-generation sequencers, the growing demands to map short DNA sequences to a genome have promoted the development of fast algorithms and tools. The tools commonly used today are based on ...

    Yoichi Takenaka, Shigeto Seno and Hideo Matsuda

    BMC Genomics 2011 12(Suppl 3):S8

    Published on: 30 November 2011

  7. Proceedings

    UASIS: Universal Automatic SNP Identification System

    SNP (Single Nucleotide Polymorphism), the most common genetic variations between human beings, is believed to be a promising way towards personalized medicine. As more and more research on SNPs are being condu...

    Danny C C Poo, Shaojiang Cai and James T L Mah

    BMC Genomics 2011 12(Suppl 3):S9

    Published on: 30 November 2011

  8. Proceedings

    In silico prediction of the granzyme B degradome

    Granzyme B is a serine protease which cleaves at unique tetrapeptide sequences. It is involved in several signaling cross-talks with caspases and functions as a pivotal mediator in a broad range of cellular pr...

    Lawrence JK Wee, Esmond PS Er, Lisa FP Ng and JC Tong

    BMC Genomics 2011 12(Suppl 3):S11

    Published on: 30 November 2011

  9. Proceedings

    i-rDNA: alignment-free algorithm for rapid in silico detection of ribosomal gene fragments from metagenomic sequence data sets

    Obtaining accurate estimates of microbial diversity using rDNA profiling is the first step in most metagenomics projects. Consequently, most metagenomic projects spend considerable amounts of time, money and m...

    Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Sudha Chadaram and Sharmila S Mande

    BMC Genomics 2011 12(Suppl 3):S12

    Published on: 30 November 2011

  10. Proceedings

    Expression profile of small RNAs in Acacia mangium secondary xylem tissue with contrasting lignin content - potential regulatory sequences in monolignol biosynthetic pathway

    Lignin, after cellulose, is the second most abundant biopolymer accounting for approximately 15-35% of the dry weight of wood. As an important component during wood formation, lignin is indispensable for plant...

    Seong Siang Ong and Ratnam Wickneswari

    BMC Genomics 2011 12(Suppl 3):S13

    Published on: 30 November 2011

  11. Proceedings

    Effective gene collection from the metatranscriptome of marine microorganisms

    Metagenomic studies, accelerated by the evolution of sequencing technologies and the rapid development of genomic analysis methods, can reveal genetic diversity and biodiversity in various samples including th...

    Atsushi Ogura, Mengjie Lin, Yuya Shigenobu, Atushi Fujiwara, Kazuho Ikeo and Satoshi Nagai

    BMC Genomics 2011 12(Suppl 3):S15

    Published on: 30 November 2011

  12. Proceedings

    Analysis of 16S rRNA environmental sequences using MEGAN

    Metagenomics is a rapidly growing field of research aimed at studying assemblages of uncultured organisms using various sequencing technologies, with the hope of understanding the true diversity of microbes, t...

    Suparna Mitra, Mario Stärk and Daniel H Huson

    BMC Genomics 2011 12(Suppl 3):S17

    Published on: 30 November 2011

  13. Proceedings

    Identification of nucleotide patterns enriched in secreted RNAs as putative cis-acting elements targeting them to exosome nano-vesicles

    Exosomes are nanoscale membrane vesicles released by most cells. They are postulated to be involved in cell–cell communication and genetic reprogramming of their target cells. In addition to proteins and lipid...

    Arsen O Batagov, Vladimir A Kuznetsov and Igor V Kurochkin

    BMC Genomics 2011 12(Suppl 3):S18

    Published on: 30 November 2011

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