Volume 15 Supplement 1

Selected articles from the Twelfth Asia Pacific Bioinformatics Conference (APBC 2014): Genomics


Edited by Shuigeng Zhou and Yi-Ping Phoebe Chen

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. Articles have undergone the journal's standard review process for supplements. The Supplement Editors declare that they have no competing interests.

The Twelfth Asia Pacific Bioinformatics Conference (APBC 2014). Go to conference site.

Shanghai, China

17-19 January 2014

Related articles have been published in supplements to BMC Bioinformatics and BMC Systems Biology.

  1. Proceedings

    An improved ChIP-seq peak detection system for simultaneously identifying post-translational modified transcription factors by combinatorial fusion, using SUMOylation as an example

    Post-translational modification (PTM) of transcriptional factors and chromatin remodelling proteins is recognized as a major mechanism by which transcriptional regulation occurs. Chromatin immunoprecipitation ...

    Chia-Yang Cheng, Chia-Han Chu, Hung-Wei Hsu, Fang-Rong Hsu, Chung Yi Tang, Wen-Ching Wang, Hsing-Jien Kung and Pei-Ching Chang

    BMC Genomics 2014 15(Suppl 1):S1

    Published on: 24 January 2014

  2. Proceedings

    Structural insights into mode of actions of novel natural Mycobacterium protein tyrosine phosphatase B inhibitors

    Tuberculosis has become a major health problem being the second leading cause of death worldwide. Mycobacterium tuberculosis secretes a virulence factor, protein tyrosine phosphatase B (mPTPB) in the cytoplasm of...

    Jaspreet Kaur Dhanjal, Sonam Grover, Sudhanshu Sharma, Ajeet Kumar Singh and Abhinav Grover

    BMC Genomics 2014 15(Suppl 1):S3

    Published on: 24 January 2014

  3. Proceedings

    Cluster based prediction of PDZ-peptide interactions

    PDZ domains are one of the most promiscuous protein recognition modules that bind with short linear peptides and play an important role in cellular signaling. Recently, few high-throughput techniques (e.g. pro...

    Kousik Kundu and Rolf Backofen

    BMC Genomics 2014 15(Suppl 1):S5

    Published on: 24 January 2014

  4. Proceedings

    Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets

    Gene set enrichment analysis (GSEA) is an important approach to the analysis of coordinate expression changes at a pathway level. Although many statistical and computational methods have been proposed for GSEA...

    Yinglei Lai, Fanni Zhang, Tapan K Nayak, Reza Modarres, Norman H Lee and Timothy A McCaffrey

    BMC Genomics 2014 15(Suppl 1):S6

    Published on: 24 January 2014

  5. Proceedings

    Spectral probabilities of top-down tandem mass spectra

    In mass spectrometry-based proteomics, the statistical significance of a peptide-spectrum or protein-spectrum match is an important indicator of the correctness of the peptide or protein identification. In bot...

    Xiaowen Liu, Matthew W Segar, Shuai Cheng Li and Sangtae Kim

    BMC Genomics 2014 15(Suppl 1):S9

    Published on: 24 January 2014

  6. Proceedings

    Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum

    Due to the importance of Penicillium chrysogenum holding in medicine, the genome of low-penicillin producing laboratorial strain Wisconsin54-1255 had been sequenced and fully annotated. Through classical mutagene...

    Fu-Qiang Wang, Jun Zhong, Ying Zhao, Jingfa Xiao, Jing Liu, Meng Dai, Guizhen Zheng, Li Zhang, Jun Yu, Jiayan Wu and Baoling Duan

    BMC Genomics 2014 15(Suppl 1):S11

    Published on: 24 January 2014

  7. Proceedings

    Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma

    Hepatocellular carcinoma (HCC) is one of the most highly malignant and lethal cancers of the world. Its pathogenesis has been reported to be multi-factorial, and the molecular carcinogenesis of HCC can not be ...

    Lin Wei, Baofeng Lian, Yuannv Zhang, Wei Li, Jianren Gu, Xianghuo He and Lu Xie

    BMC Genomics 2014 15(Suppl 1):S13

    Published on: 24 January 2014

  8. Proceedings

    Sequence alignment by passing messages

    Sequence alignment has become an indispensable tool in modern molecular biology research, and probabilistic sequence alignment models have been shown to provide an effective framework for building accurate seq...

    Byung-Jun Yoon

    BMC Genomics 2014 15(Suppl 1):S14

    Published on: 24 January 2014

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