Edited by Emidio Capriotti, Yana Bromberg and Hannah Carter
Volume 20 Supplement 8
Proceedings of VarI-COSI 2018: identification and annotation of genetic variants in the context of structure, function, and disease: genomics
Research
Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.
Chicago, IL, USA08 July 2018
Related articles have been published as a supplement to BMC Bioinformatics and BMC Medical Genomics.
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Citation: BMC Genomics 2019 20(Suppl 8):550
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Recurrent miscalling of missense variation from short-read genome sequence data
Short-read resequencing of genomes produces abundant information of the genetic variation of individuals. Due to their numerous nature, these variants are rarely exhaustively validated. Furthermore, low levels...
Citation: BMC Genomics 2019 20(Suppl 8):546 -
Assessing cell-specific effects of genetic variations using tRNA microarrays
By definition, effect of synonymous single-nucleotide variants (SNVs) on protein folding and function are neutral, as they alter the codon and not the encoded amino acid. Recent examples indicate tissue-specif...
Citation: BMC Genomics 2019 20(Suppl 8):549 -
Benchmarking subcellular localization and variant tolerance predictors on membrane proteins
Membrane proteins constitute up to 30% of the human proteome. These proteins have special properties because the transmembrane segments are embedded into lipid bilayer while extramembranous parts are in differ...
Citation: BMC Genomics 2019 20(Suppl 8):547 -
A clinically validated whole genome pipeline for structural variant detection and analysis
With the continuing decrease in cost of whole genome sequencing (WGS), we have already approached the point of inflection where WGS testing has become economically feasible, facilitating broader access to the ...
Citation: BMC Genomics 2019 20(Suppl 8):545 -
Relation between DNA ionization potentials, single base substitutions and pathogenic variants
It is nowadays clear that single base substitutions that occur in the human genome, of which some lead to pathogenic conditions, are non-random and influenced by their flanking nucleobase sequences. However, d...
Citation: BMC Genomics 2019 20(Suppl 8):551 -
PhenPath: a tool for characterizing biological functions underlying different phenotypes
Many diseases are associated with complex patterns of symptoms and phenotypic manifestations. Parsimonious explanations aim at reconciling the multiplicity of phenotypic traits with the perturbation of one or ...
Citation: BMC Genomics 2019 20(Suppl 8):548
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