Volume 21 Supplement 1

Selected articles from the 14th International Symposium on Bioinformatics Research and Applications (ISBRA-18): genomics

Research

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

Beijing, China8-11 June 2018

Conference website

Edited by Pavel Skums, Alex Zelikovsky, Zhipeng Cai, Fa Zhang.

Gene expression analysis reveals the tipping points during infant brain development for human and chimpanzee

Postpartum developmental delay has been proposed as an important phenotype of human evolution which contributes to many human-specific features including the increase in brain size and the advanced human-speci...

Authors: Hui Tang, Ying Tang, Tao Zeng and Luonan Chen

Citation: BMC Genomics 2020 21(Suppl 1):74

Content type: Research Published on: 5 March 2020
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OffScan: a universal and fast CRISPR off-target sites detection tool

The Type II clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated proteins (Cas) is a powerful genome editing technology, which is more and more popular in gene function anal...

Authors: Yingbo Cui, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang and Canqun Yang

Citation: BMC Genomics 2020 21(Suppl 1):872

Content type: Research Published on: 5 March 2020
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Detecting horizontal gene transfer: a probabilistic approach

Horizontal gene transfer (HGT) is the event of a DNA sequence being transferred between species not by inheritance. HGT is a crucial factor in prokaryotic evolution and is a significant source for genomic nove...

Authors: Gur Sevillya, Orit Adato and Sagi Snir

Citation: BMC Genomics 2020 21(Suppl 1):106

Content type: Research Published on: 5 March 2020
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Detecting circular RNA from high-throughput sequence data with de Bruijn graph

Circular RNA is a type of non-coding RNA, which has a circular structure. Many circular RNAs are stable and contain exons, but are not translated into proteins. Circular RNA has important functions in gene reg...

Authors: Xin Li and Yufeng Wu

Citation: BMC Genomics 2020 21(Suppl 1):749

Content type: Methodology Published on: 5 March 2020
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InvBFM: finding genomic inversions from high-throughput sequence data based on feature mining

Genomic inversion is one type of structural variations (SVs) and is known to play an important biological role. An established problem in sequence data analysis is calling inversions from high-throughput seque...

Authors: Zhongjia Wu, Yufeng Wu and Jingyang Gao

Citation: BMC Genomics 2020 21(Suppl 1):173

Content type: Methodology Published on: 5 March 2020
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Identification of methylation states of DNA regions for Illumina methylation BeadChip

Methylation of cytosine bases in DNA is a critical epigenetic mark in many eukaryotes and has also been implicated in the development and progression of normal and diseased cells. Therefore, profiling DNA meth...

Authors: Ximei Luo, Fang Wang, Guohua Wang and Yuming Zhao

Citation: BMC Genomics 2020 21(Suppl 1):672

Content type: Methodology Published on: 5 March 2020
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A framework using topological pathways for deeper analysis of transcriptome data

Pathway analysis is one of the later stage data analysis steps essential in interpreting high-throughput gene expression data. We propose a set of algorithms which given gene expression data can recognize whic...

Authors: Yue Zhao, Stephanie Piekos, Tham H. Hoang and Dong-Guk Shin

Citation: BMC Genomics 2020 21(Suppl 1):834

Content type: Methodology Published on: 5 March 2020
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Selected articles from the 14th International Symposium on Bioinformatics Research and Applications (ISBRA-18): genomics

Research

Gene expression analysis reveals the tipping points during infant brain development for human and chimpanzee

OffScan: a universal and fast CRISPR off-target sites detection tool

Detecting horizontal gene transfer: a probabilistic approach

Detecting circular RNA from high-throughput sequence data with de Bruijn graph

InvBFM: finding genomic inversions from high-throughput sequence data based on feature mining

Identification of methylation states of DNA regions for Illumina methylation BeadChip

A framework using topological pathways for deeper analysis of transcriptome data

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