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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 29 of 128

  1. Zinc finger homeodomain proteins (ZHD) constitute a plant-specific transcription factor family with a conserved DNA binding homeodomain and a zinc finger motif. Members of the ZHD protein family play important...

    Authors: Khadiza Khatun, Ujjal Kumar Nath, Arif Hasan Khan Robin, Jong-In Park, Do-Jin Lee, Min-Bae Kim, Chang Kil Kim, Ki-Byung Lim, Ill Sup Nou and Mi-Young Chung
    Citation: BMC Genomics 2017 18:695
    Content type: Research article Published on:

  2. The deep-sea hydrothermal vent mussel Bathymodiolus azoricus harbors thiotrophic and methanotrophic symbiotic bacteria in its gills. While the symbiotic relationship between this hydrothermal mussel and these che...

    Authors: Isabelle Boutet, Raymond Ripp, Odile Lecompte, Carole Dossat, Erwan Corre, Arnaud Tanguy and François H Lallier
    Citation: BMC Genomics 2011 12:530
    Content type: Research article Published on:

  3. The species Brassica rapa (2n=20, AA) is an important vegetable and oilseed crop, and serves as an excellent model for genomic and evolutionary research in Brassica species. With the availability of whole genome ...

    Authors: Chaobo Tong, Xiaowu Wang, Jingyin Yu, Jian Wu, Wanshun Li, Junyan Huang, Caihua Dong, Wei Hua and Shengyi Liu
    Citation: BMC Genomics 2013 14:689
    Content type: Research article Published on:

  4. Chicken skeletal muscle is an important economic product. The late stages of chicken development constitute the main period that affects meat production. LncRNAs play important roles in controlling the epigene...

    Authors: Yuanfang Li, Wenjiao Jin, Bin Zhai, Yi Chen, Guoxi Li, Yanhua Zhang, Yujie Guo, Guirong Sun, Ruili Han, Zhuanjian Li, Hong Li, Yadong Tian, Xiaojun Liu and Xiangtao Kang
    Citation: BMC Genomics 2021 22:44
    Content type: Research article Published on:

  5. The role of coastal nutrient sources in the persistence of Karenia brevis red tides in coastal waters of Florida is a contentious issue that warrants investigation into the regulation of nutrient responses in thi...

    Authors: Jeanine S Morey, Emily A Monroe, Amanda L Kinney, Marion Beal, Jillian G Johnson, Gary L Hitchcock and Frances M Van Dolah
    Citation: BMC Genomics 2011 12:346
    Content type: Research article Published on:

  6. Auxin/induced-3-acetic acid (Aux/IAA) is an important plant hormone that affects plant growth and resistance to abiotic stresses. Drought stress is a vital factor in reducing plant biomass yield and production...

    Authors: Jinqing Zhang, Shuxia Li, Xueqin Gao, Yaling Liu and BingZhe Fu
    Citation: BMC Genomics 2024 25:382
    Content type: Research Published on:

  7. Light represents an important environmental cue, which exerts considerable influence on the metabolism of fungi. Studies with the biotechnological fungal workhorse Trichoderma reesei (Hypocrea jecorina) have reve...

    Authors: Monika Schmoll, Chaoguang Tian, Jianping Sun, Doris Tisch and N Louise Glass
    Citation: BMC Genomics 2012 13:127
    Content type: Research article Published on:

  9. The oxidative burst is one of the major antimicrobial mechanisms adopted by macrophages. The WKY rat strain is uniquely susceptible to experimentally induced macrophage-dependent crescentic glomerulonephritis ...

    Authors: Richard P Hull, Prashant K Srivastava, Zelpha D’Souza, Santosh S Atanur, Fatima Mechta-Grigoriou, Laurence Game, Enrico Petretto, H Terence Cook, Timothy J Aitman and Jacques Behmoaras
    Citation: BMC Genomics 2013 14:92
    Content type: Research article Published on:

  10. Oct4 is a POU-domain transcriptional factor which is essential for maintaining pluripotency in several mammalian species. The mouse, human, and bovine Oct4 orthologs display a high conservation of nucleotide sequ...

    Authors: Sergey P Medvedev, Alexander I Shevchenko, Eugene A Elisaphenko, Tatyana B Nesterova, Neil Brockdorff and Suren M Zakian
    Citation: BMC Genomics 2008 9:162
    Content type: Research article Published on:

  11. Chickens are susceptible to infection with a limited number of Influenza A viruses and are a potential source of a human influenza pandemic. In particular, H5 and H7 haemagglutinin subtypes can evolve from low...

    Authors: Jacqueline Smith, Nikki Smith, Le Yu, Ian R. Paton, Maria Weronika Gutowska, Heather L. Forrest, Angela F. Danner, J. Patrick Seiler, Paul Digard, Robert G. Webster and David W. Burt
    Citation: BMC Genomics 2015 16:574
    Content type: Research article Published on:

  12. The systematic interrogation of reproduction-related genes was key to gain a comprehensive understanding of the molecular mechanisms underlying male reproductive traits in mammals. Here, based on the data coll...

    Authors: Wenjing Yang, Feiyang Zhao, Mingyue Chen, Ye Li, Xianyong Lan, Ruolin Yang and Chuanying Pan
    Citation: BMC Genomics 2020 21:381
    Content type: Research article Published on:

  13. There are more than 1 million persons living with HIV/AIDS (PLWHA) in the United States and approximately 40 % of them have a history of alcohol use disorders (AUD). Chronic heavy alcohol consumption and HIV/A...

    Authors: Liz Simon, Andrew D. Hollenbach, Jovanny Zabaleta and Patricia E. Molina
    Citation: BMC Genomics 2015 16:1097
    Content type: Research article Published on:

  14. The cotton (Gossypium spp.) fiber cell is an important unicellular model for studying cell differentiation. There is evidence suggesting that phosphorylation is a critical post-translational modification involved...

    Authors: Qifeng Ma, Man Wu, Wenfeng Pei, Haijing Li, Xingli Li, Jinfa Zhang, Jiwen Yu and Shuxun Yu
    Citation: BMC Genomics 2014 15:466
    Content type: Research article Published on:

  15. The immature fiber (im) mutant of Gossypium hirsutum L. is a special cotton fiber mutant with non-fluffy fibers. It has low dry weight and fineness of fibers due to developmental defects in fiber secondary cell w...

    Authors: Cheng Wang, Yuanda Lv, Wentin Xu, Tianzhen Zhang and Wangzhen Guo
    Citation: BMC Genomics 2014 15:94
    Content type: Research article Published on:

  16. Water deficit has significant effects on grape berry composition resulting in improved wine quality by the enhancement of color, flavors, or aromas. While some pathways or enzymes affected by water deficit hav...

    Authors: Laurent G Deluc, David R Quilici, Alain Decendit, Jérôme Grimplet, Matthew D Wheatley, Karen A Schlauch, Jean-Michel Mérillon, John C Cushman and Grant R Cramer
    Citation: BMC Genomics 2009 10:212
    Content type: Research article Published on:

  17. Accurate genome assembly and gene model annotation are critical for comparative species and gene functional analyses. Here we present the completed genome sequence and annotation of the reference strain PH-1 of F...

    Authors: Robert King, Martin Urban, Michael C. U. Hammond-Kosack, Keywan Hassani-Pak and Kim E. Hammond-Kosack
    Citation: BMC Genomics 2015 16:544
    Content type: Research article Published on:

  18. Several Gram-negative species undergo development leading to the formation of metabolically dormant desiccation resistant cysts. Recent analysis of cyst development has revealed that ~20 % of the Rhodospirillum c...

    Authors: Qian Dong, Mingxu Fang, Sugata Roychowdhury and Carl E. Bauer
    Citation: BMC Genomics 2015 16:1066
    Content type: Research article Published on:

  19. Cotton fibre is a single cell and it is one of the best platforms for unraveling the genes express during various stages of fibre development. There are reports devoted to comparative transcriptome study on fi...

    Authors: Atul S. Hande, Ishwarappa S. Katageri, Mangesh P. Jadhav, Sateesh Adiger, Savita Gamanagatti, Kethireddy Venkata Padmalatha, Gurusamy Dhandapani, Mogilicherla Kanakachari, Polumetla Ananda Kumar and Vanga Siva Reddy
    Citation: BMC Genomics 2017 18:675
    Content type: Research article Published on:

  20. Gene expression regulation is one of the fundamental mechanisms of phenotypic plasticity and is expected to respond to selection in conditions favoring phenotypic response. The observation that many organisms ...

    Authors: Lev Y Yampolsky, Erliang Zeng, Jacqueline Lopez, Patricia J Williams, Kenneth B Dick, John K Colbourne and Michael E Pfrender
    Citation: BMC Genomics 2014 15:859
    Content type: Research article Published on:

  21. Many plant species have been investigated in the last years for the identification and characterization of the corresponding miRNAs, nevertheless extensive studies are not yet available on barley (at the time ...

    Authors: Moreno Colaiacovo, Annalisa Subacchi, Paolo Bagnaresi, Antonella Lamontanara, Luigi Cattivelli and Primetta Faccioli
    Citation: BMC Genomics 2010 11:595
    Content type: Research article Published on:

  22. Soil alkalinity shows significant constraints to crop productivity; however, much less attention has been paid to analyze the effect of soil alkalinity on plant growth and development. Shanrong No. 4 (SR4) is ...

    Authors: Chen Meng, Tai-Yong Quan, Zhong-Yi Li, Kang-Li Cui, Li Yan, Yu Liang, Jiu-Lan Dai, Guang-Min Xia and Shu-Wei Liu
    Citation: BMC Genomics 2017 18:24
    Content type: Research Article Published on:

  23. Allergic contact dermatitis is an inflammatory skin disease that affects a significant proportion of the population. This disease is caused by an adverse immune response towards chemical haptens, and leads to ...

    Authors: Henrik Johansson, Malin Lindstedt, Ann-Sofie Albrekt and Carl AK Borrebaeck
    Citation: BMC Genomics 2011 12:399
    Content type: Research article Published on:

  24. Global mRNA amplification has become a widely used approach to obtain gene expression profiles from limited material. An important concern is the reliable reflection of the starting material in the results obt...

    Authors: Vigdis Nygaard, Marit Holden, Anders Løland, Mette Langaas, Ola Myklebost and Eivind Hovig
    Citation: BMC Genomics 2005 6:147
    Content type: Research article Published on:

  25. Plants use different light signals to adjust their growth and development to the prevailing environmental conditions. Studies in the model species Arabidopsis thaliana and rice indicate that these adjustments are...

    Authors: Mariana Rutitzky, Hernan O Ghiglione, José A Curá, Jorge J Casal and Marcelo J Yanovsky
    Citation: BMC Genomics 2009 10:60
    Content type: Research article Published on:

  26. The continuous and non-synchronous nature of postnatal male germ-cell development has impeded stage-specific resolution of molecular events of mammalian meiotic prophase in the testis. Here the juvenile onset ...

    Authors: Robyn L. Ball, Yasuhiro Fujiwara, Fengyun Sun, Jianjun Hu, Matthew A. Hibbs, Mary Ann Handel and Gregory W. Carter
    Citation: BMC Genomics 2016 17:628
    Content type: Research article Published on:

  27. Free asparagine is the precursor for acrylamide formation during cooking and processing of grains, tubers, beans and other crop products. In wheat grain, free asparagine, free glutamine and total free amino ac...

    Authors: Tanya Y. Curtis, Sarah Raffan, Yongfang Wan, Robert King, Asier Gonzalez-Uriarte and Nigel G. Halford
    Citation: BMC Genomics 2019 20:628
    Content type: Research article Published on:

  28. The general population is constantly exposed to low levels of radiation through natural, occupational or medical irradiation. Even if the biological effects of low-level radiation have been intensely debated a...

    Authors: Florian Bonin, Manuella Molina, Claude Malet, Chantal Ginestet, Odile Berthier-Vergnes, Michèle T Martin and Jérôme Lamartine
    Citation: BMC Genomics 2009 10:417
    Content type: Research article Published on:

  29. Viral upper respiratory tract infections are associated with increased colonization by Streptococcus pneumoniae but the mechanisms underlying this relationship are unclear. The objective of this study is to descr...

    Authors: Sheila Z Kimaro Mlacha, Teresa C T Peret, Nikhil Kumar, Sandra Romero-Steiner, Julie C Dunning Hotopp, Nadeeza Ishmael, Valerie Grinblat-Huse, David R Riley, Dean D Erdman, George M Carlone, Jacquelyn Sampson, J Anthony G Scott and Hervé Tettelin
    Citation: BMC Genomics 2013 14:378
    Content type: Research article Published on:

  30. The MAPK signaling proteins are involved in many eukaryotic cellular processes and signaling networks. However, specific functions of most of these proteins in vertebrate development remain elusive because of ...

    Authors: SF Gabby Krens, Maximiliano Corredor-Adámez, Shuning He, B Ewa Snaar-Jagalska and Herman P Spaink
    Citation: BMC Genomics 2008 9:196
    Content type: Research article Published on:

  31. Amycolatopsis orientalis is the type species of the genus and its industrial strain HCCB10007, derived from ATCC 43491, has been used for large-scale production of the vital antibiotic vancomycin. However, to dat...

    Authors: Li Xu, He Huang, Wei Wei, Yi Zhong, Biao Tang, Hua Yuan, Li Zhu, Weiyi Huang, Mei Ge, Shen Yang, Huajun Zheng, Weihong Jiang, Daijie Chen, Guo-Ping Zhao and Wei Zhao
    Citation: BMC Genomics 2014 15:363
    Content type: Research article Published on:

  32. To elucidate the genes involved in the neoplastic transformation of B cells, global gene expression profiles were generated using Affymetrix U74Av2 microarrays, containing 12,488 genes, for four different grou...

    Authors: Eun Sung Park, John D Shaughnessy Jr, Shalu Gupta, Hongyang Wang, Ju-Seog Lee, Hyun Goo Woo, Fenghuang Zhan, James D Owens Jr, Michael Potter, Siegfried Janz and J Frederic Mushinski
    Citation: BMC Genomics 2007 8:302
    Content type: Research article Published on:

  33. Cultivated peanut (Arachis hypogaea) is one of the most widely grown grain legumes in the world, being valued for its high protein and unsaturated oil contents. Worldwide, the major constraints to peanut producti...

    Authors: Patricia M Guimarães, Ana CM Brasileiro, Carolina V Morgante, Andressa CQ Martins, Georgios Pappas, Orzenil B Silva Jr, Roberto Togawa, Soraya CM Leal-Bertioli, Ana CG Araujo, Marcio C Moretzsohn and David J Bertioli
    Citation: BMC Genomics 2012 13:387
    Content type: Research article Published on:

  35. Cotton (Gossypium spp.) is the most important world-wide fiber crop but salt stress limits cotton production in coastal and other areas. Growth regulation factors (GRFs) play regulatory roles in response to salt ...

    Authors: Jun-Feng Cao, Jin-Quan Huang, Xia Liu, Chao-Chen Huang, Zi-Shou Zheng, Xiu-Fang Zhang, Xiao-Xia Shangguan, Ling-Jian Wang, Yu-Gao Zhang, Jonathan F. Wendel, Corrinne E. Grover and Zhi-Wen Chen
    Citation: BMC Genomics 2020 21:575
    Content type: Research article Published on:

  36. Invasion of intestinal epithelial cells by Salmonella enterica serovar Typhimurium (S. Typhimurium) requires expression of the extracellular virulence gene expression programme (STEX), activation of which is depe...

    Authors: Vinoy K Ramachandran, Neil Shearer, Jobin J Jacob, Cynthia M Sharma and Arthur Thompson
    Citation: BMC Genomics 2012 13:25
    Content type: Research article Published on:

  37. MiRNAs and phasiRNAs are negative regulators of gene expression. These small RNAs have been extensively studied in plant model species but only 10 mature microRNAs are present in miRBase version 21, the most u...

    Authors: Damien Formey, Luis Pedro Iñiguez, Pablo Peláez, Yong-Fang Li, Ramanjulu Sunkar, Federico Sánchez, José Luis Reyes and Georgina Hernández
    Citation: BMC Genomics 2015 16:423
    Content type: Research article Published on:

  38. Numerous studies have established a link between maternal diet and the physiological and metabolic phenotypes of their offspring. In previous studies in sheep, we demonstrated that different maternal diets alt...

    Authors: Hadjer Namous, Francisco Peñagaricano, Marcello Del Corvo, Emanuele Capra, David L. Thomas, Alessandra Stella, John L. Williams, Paolo Ajmone Marsan and Hasan Khatib
    Citation: BMC Genomics 2018 19:123
    Content type: Research article Published on:

  39. Our prior characterization of RasGrf1 deficient mice uncovered significant defects in pancreatic islet count and size as well as beta cell development and signaling function, raising question about the mechani...

    Authors: Lara Manyes, Monica Arribas, Carmela Gomez, Nuria Calzada, Alberto Fernandez-Medarde and Eugenio Santos
    Citation: BMC Genomics 2014 15:1019
    Content type: Research article Published on:

  40. The development of asymmetric chick gonads involves separate developmental programs in the left and right gonads. In contrast to the left ovary developing into a fully functional reproductive organ, the right ...

    Authors: Mingxia Ran, Qingyuan Ouyang, Xuejian Li, Shenqiang Hu, Bo Hu, Jiwei Hu, Dan Dong, Liang Li, Hua He, Hehe Liu and Jiwen Wang
    Citation: BMC Genomics 2023 24:389
    Content type: Research Published on:

  41. The Yesso scallop, Patinopecten (Mizuhopecten) yessoensis, is a commercially important bivalve in the coastal countries of Northeast Asia. It has complex modes of sex differentiation, but knowledge of the mechani...

    Authors: Liqing Zhou, Zhihong Liu, Yinghui Dong, Xiujun Sun, Biao Wu, Tao Yu, Yanxin Zheng, Aiguo Yang, Qing Zhao and Dan Zhao
    Citation: BMC Genomics 2019 20:671
    Content type: Research article Published on:

  42. Differentiation of primordial germ cells into mature spermatozoa proceeds through multiple stages, one of the most important of which is meiosis. Meiotic recombination is in turn a key part of meiosis. To achi...

    Authors: Gennady Margolin, Pavel P Khil, Joongbaek Kim, Marina A Bellani and R Daniel Camerini-Otero
    Citation: BMC Genomics 2014 15:39
    Content type: Research article Published on:

  43. Salt stress is one of the most destructive environmental factors limiting crop growth and development. MicroRNAs (miRNAs) are a class of conserved endogenous small non-coding RNAs, playing the crucial role in ...

    Authors: Guang Yang, Wenqiu Pan, Rui Cao, Qifan Guo, Yue Cheng, Qinlong Zhao, Licao Cui and Xiaojun Nie
    Citation: BMC Genomics 2022 23:724
    Content type: Research Published on:

  44. Clostridium perfringens is a Gram-positive anaerobic pathogen that causes multiple diseases in humans and animals. C. perfringens lack flagella but have type IV pili (TFP) and can glide on agar surfaces. When C. ...

    Authors: Samantha R. Soncini, Andrea H. Hartman, Tara M. Gallagher, Gary J. Camper, Roderick V. Jensen and Stephen B. Melville
    Citation: BMC Genomics 2020 21:45
    Content type: Research article Published on:

  45. Brassinosteroids (BRs) are a type of sterol plant hormone that play an important role in various biochemical and physiological reactions such as promoting cell growth, increasing biomass, and improving stress ...

    Authors: Qifang Jin, Zhong Wang, Yanni Chen, Yiping Luo, Na Tian, Zhonghua Liu, Jianan Huang and Shuoqian Liu
    Citation: BMC Genomics 2022 23:29
    Content type: Research Published on:

  46. The development of complex responses to hypoxia has played a key role in the evolution of mammals, as inadequate response to this condition is frequently associated with cardiovascular diseases, developmental ...

    Authors: Assaf Malik, Abraham Korol, Mathias Weber, Thomas Hankeln, Aaron Avivi and Mark Band
    Citation: BMC Genomics 2012 13:615
    Content type: Research article Published on:

  47. As one of the largest transcription factor families in plants, the APETALA2/Ethylene-Responsive Factor (AP2/ERF) superfamily is involved in various biological processes and plays significant roles in plant gro...

    Authors: Jing Zhang, Jiayao Liao, Qiqi Ling, Yan Xi and Yexiong Qian
    Citation: BMC Genomics 2022 23:125
    Content type: Research Published on:

  48. Chromatin accessibility is essential for transcriptional activation of genomic regions. It is well established that transcription factors (TFs) and histone modifications (HMs) play critical roles in chromatin ...

    Authors: Yanding Zhao, Yadong Dong, Wei Hong, Chongming Jiang, Kevin Yao and Chao Cheng
    Citation: BMC Genomics 2022 23:19
    Content type: Research Published on:

  49. Peroxisome Proliferator-Activated receptor α (PPARα) and cAMP-Responsive Element Binding Protein 3-Like 3 (CREB3L3) are transcription factors involved in the regulation of lipid metabolism in the liver. The ai...

    Authors: Philip M. M. Ruppert, Jong-Gil Park, Xu Xu, Kyu Yeon Hur, Ann-Hwee Lee and Sander Kersten
    Citation: BMC Genomics 2019 20:199
    Content type: Research article Published on:

  50. In Streptomyces coelicolor, bldA encodes the only tRNA for a rare leucine codon, UUA. This tRNA is unnecessary for growth, but is required for some aspects of secondary metabolism and morphological development. W...

    Authors: Andy Hesketh, Giselda Bucca, Emma Laing, Fiona Flett, Graham Hotchkiss, Colin P Smith and Keith F Chater
    Citation: BMC Genomics 2007 8:261
    Content type: Research article Published on:

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BMC Genomics

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