Skip to main content

Articles

6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 45 of 128

  1. Sheath blight (SB), caused by Rhizoctonia solani, is a common rice disease worldwide. Currently, rice cultivars with robust resistance to R. solani are still lacking. To provide theoretic basis for molecular bree...

    Authors: Wei Shi, Shao-Lu Zhao, Kai Liu, Yi-Biao Sun, Zheng-Bin Ni, Gui-Yun Zhang, Hong-Sheng Tang, Jing-Wen Zhu, Bai-Jie Wan, Hong-Qin Sun, Jin-Ying Dai, Ming-Fa Sun, Guo-Hong Yan, Ai-Min Wang and Guo-Yong Zhu
    Citation: BMC Genomics 2020 21:245
    Content type: Research article Published on:

  2. Understanding the genetic and developmental origins of phenotypic novelty is central to the study of biological diversity. In this study we identify modifications to the expression of genes at four development...

    Authors: Ezra S. Lencer, Wesley C. Warren, Richard Harrison and Amy R. McCune
    Citation: BMC Genomics 2017 18:424
    Content type: Research article Published on:

  3. Hepatitis Delta Virus (HDV)-like ribozymes have recently been found in many mobile elements in which they take part in a mechanism that releases intermediate RNAs from cellular co-transcripts. L1Tc in Trypanosoma...

    Authors: Francisco José Sánchez-Luque, Manuel Carlos López, Patricia Eugenia Carreira, Carlos Alonso and María Carmen Thomas
    Citation: BMC Genomics 2014 15:340
    Content type: Research article Published on:

  4. Alternative polyadenylation (APA), alternative splicing (AS), and long non-coding RNAs (lncRNAs) play regulatory roles in post-transcriptional processes in plants. However, little is known about their involvem...

    Authors: Nanbo Jiao, Jieru Xu, Yue Wang, Dunxi Li, Feifei Chen, Yu Chen and Jinhui Chen
    Citation: BMC Genomics 2024 25:372
    Content type: Research Published on:

  5. Infections with hepatitis C virus (HCV) progress to chronic phase in 80% of patients. To date, the effect produced by HCV on the expression of microRNAs (miRs) involved in the interferon-β (IFN-β) antiviral pa...

    Authors: Roberto Bruni, Cinzia Marcantonio, Elena Tritarelli, Paola Tataseo, Emilia Stellacci, Angela Costantino, Umbertina Villano, Angela Battistini and Anna Rita Ciccaglione
    Citation: BMC Genomics 2011 12:485
    Content type: Research article Published on:

  6. The degree to which the chromosomal mediated iron acquisition system contributes to virulence of many bacterial pathogens is well defined. However, the functional roles of plasmid encoded iron acquisition syst...

    Authors: Bijay K. Khajanchi, Nur A. Hasan, Seon Young Choi, Jing Han, Shaohua Zhao, Rita R. Colwell, Carl E. Cerniglia and Steven L. Foley
    Citation: BMC Genomics 2017 18:570
    Content type: Research article Published on:

  7. Nicotiana attenuata is an ecological model plant whose 2.57 Gb genome has recently been sequenced and assembled and for which miRNAs and their genomic locations have been identified. To understand how this plant’...

    Authors: Priyanka Pandey, Ming Wang, Ian T. Baldwin, Shree P. Pandey and Karin Groten
    Citation: BMC Genomics 2018 19:937
    Content type: Research article Published on:

  8. Cells transformed by human adenoviruses (Ad) exhibit differential capacities to induce tumours in immunocompetent rodents; for example, Ad12-transformed rodent cells are oncogenic whereas Ad5-transformed cells...

    Authors: Janet Strath, Lindsay J Georgopoulos, Paul Kellam and G Eric Blair
    Citation: BMC Genomics 2009 10:67
    Content type: Research article Published on:

  9. Luman is a member of CREB3 (cAMP responsive element-binding) subfamily of the basic leucine-zipper (bZIP) transcription factors. It may play an important regulatory role during the decidualization process sinc...

    Authors: Fan Zhao, Huan Liu, Nan Wang, Lijun Yu, Aihua Wang, Yanglei Yi and Yaping Jin
    Citation: BMC Genomics 2020 21:103
    Content type: Research article Published on:

  10. The cucumber is one of the most important vegetables worldwide and is used as a research model for study of phloem transport, sex determination and temperature-photoperiod physiology. The shoot apex is the mos...

    Authors: Xiaohui Zhang, Yunsong Lai, Wei Zhang, Jalil Ahmad, Yang Qiu, Xiaoxue Zhang, Mengmeng Duan, Tongjin Liu, Jiangping Song, Haiping Wang and Xixiang Li
    Citation: BMC Genomics 2018 19:819
    Content type: Research article Published on:

  11. Starvation triggers a complex array of adaptative metabolic responses including energy-metabolic responses, a process which must imply tissue specific alterations in gene expression and in which the liver play...

    Authors: Colette Désert, Michel J Duclos, Pierre Blavy, Frédéric Lecerf, François Moreews, Christophe Klopp, Marc Aubry, Frédéric Herault, Pascale Le Roy, Cécile Berri, Madeleine Douaire, Christian Diot and Sandrine Lagarrigue
    Citation: BMC Genomics 2008 9:611
    Content type: Research article Published on:

  12. Pectin methylesterases (PMEs) catalyze the demethylesterification of homogalacturonans in the cell wall; their activity is regulated in part by pectin methylesterase inhibitors (PMEIs). PME activity may result...

    Authors: David Pinzón-Latorre and Michael K Deyholos
    Citation: BMC Genomics 2013 14:742
    Content type: Research article Published on:

  13. In wine fermentation starter cultures, the blending of non-Saccharomyces yeast with Saccharomyces cerevisiae to improve the complexity of wine has become common practice, but data regarding the impact of co-culti...

    Authors: Kirti Shekhawat, Hugh Patterton, Florian F. Bauer and Mathabatha E. Setati
    Citation: BMC Genomics 2019 20:145
    Content type: Research article Published on:

  14. The central role of the somatotrophic axis in animal post-natal growth, development and fertility is well established. Therefore, the identification of genetic variants affecting quantitative traits within thi...

    Authors: Michael P Mullen, Christopher J Creevey, Donagh P Berry, Matt S McCabe, David A Magee, Dawn J Howard, Aideen P Killeen, Stephen D Park, Paul A McGettigan, Matt C Lucy, David E MacHugh and Sinead M Waters
    Citation: BMC Genomics 2012 13:16
    Content type: Research article Published on:

  15. MicroRNAs (miRNAs) are a class of endogenous, small, non-coding RNAs that regulate gene expression by mediating gene silencing at transcriptional and post-transcriptional levels in high plants. However, the di...

    Authors: Zhihong Gao, Ting Shi, Xiaoyan Luo, Zhen Zhang, Weibing Zhuang and Liangju Wang
    Citation: BMC Genomics 2012 13:371
    Content type: Research article Published on:

  16. Human myelopoiesis is an exciting biological model for cellular differentiation since it represents a plastic process where multipotent stem cells gradually limit their differentiation potential, generating di...

    Authors: Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Dario Basso, Silvio Bicciato, Roberta Zini, Claudia Gemelli, Gian Antonio Danieli and Sergio Ferrari
    Citation: BMC Genomics 2007 8:264
    Content type: Research article Published on:

  17. Thiamine availability is involved in glycolytic flux and fermentation efficiency. A deficiency of this vitamin may be responsible for sluggish fermentations in wine making. Therefore, both thiamine uptake and de ...

    Authors: Christian Brion, Chloé Ambroset, Pierre Delobel, Isabelle Sanchez and Bruno Blondin
    Citation: BMC Genomics 2014 15:1085
    Content type: Research article Published on:

  18. MicroRNAs (miRNAs) have critical functions in various biological processes. MiRNA profiling is an important tool for the identification of differentially expressed miRNAs in normal cellular and disease process...

    Authors: Yongxin Chen, Jonathan AL Gelfond, Linda M McManus and Paula K Shireman
    Citation: BMC Genomics 2009 10:407
    Content type: Methodology article Published on:

  19. Polycyclic aromatic hydrocarbons are common pollutants in soil, have negative effects on soil ecosystems, and are potentially carcinogenic. The Springtail (Collembola) Folsomia candida is often used as an indicat...

    Authors: Benjamin Nota, Mirte Bosse, Bauke Ylstra, Nico M van Straalen and Dick Roelofs
    Citation: BMC Genomics 2009 10:236
    Content type: Research article Published on:

  21. The oomycete Plasmopara viticola (Berk. and Curt.) Berl. and de Toni causes downy mildew in grapevine (Vitis vinifera L.). This pathogen is strictly biotrophic, thus completely dependent on living host cells for ...

    Authors: Marianna Polesani, Filomena Desario, Alberto Ferrarini, Anita Zamboni, Mario Pezzotti, Andreas Kortekamp and Annalisa Polverari
    Citation: BMC Genomics 2008 9:142
    Content type: Research article Published on:

  22. Various small RNA (sRNA) sizes and varieties have been identified, but their relationship as well as relationship with their origins and allocations have not been well understood or investigated.

    Authors: Michael Hackenberg, Antonio Rueda, Perry Gustafson, Peter Langridge and Bu-Jun Shi
    Citation: BMC Genomics 2016 17:735
    Content type: Research article Published on:

  23. In a process known as phase variation, the marine bacterium and cholera pathogen Vibrio cholerae alternately expresses smooth or rugose colonial phenotypes, the latter being associated with advanced biofilm archi...

    Authors: Bliss Lambert, Maheshi Dassanayake, Dong-Ha Oh, Shana B. Garrett, Sang-Yeol Lee and Gregg S. Pettis
    Citation: BMC Genomics 2016 17:914
    Content type: Research article Published on:

  25. Escherichia coli strains lacking the phosphoenolpyruvate: carbohydrate phosphotransferase system (PTS), which is the major bacterial component involved in glucose transport and its phosphorylation, accumulate hig...

    Authors: César Aguilar, Adelfo Escalante, Noemí Flores, Ramón de Anda, Fernando Riveros-McKay, Guillermo Gosset, Enrique Morett and Francisco Bolívar
    Citation: BMC Genomics 2012 13:385
    Content type: Research article Published on:

  26. Receptor interacting serine/threonine kinase 2 (RIP2), ubiquitous in many tissue/cell types, is the key regulator of immune and inflammatory responses for many diseases, including avian pathogenic E. coli (APEC),...

    Authors: Hongyan Sun, Yexin Yang, Yuxuan Cao, Huan Li, Lujiang Qu and Susan J. Lamont
    Citation: BMC Genomics 2022 23:341
    Content type: Research Published on:

  27. The repulsive guidance molecule a (RGMa) is a GPI-anchor axon guidance molecule first found to play important roles during neuronal development. RGMa expression patterns and signaling pathways via Neogenin and...

    Authors: Aline Gonçalves Lio Copola, Íria Gabriela Dias dos Santos, Luiz Lehmann Coutinho, Luiz Eduardo Vieira Del-Bem, Paulo Henrique de Almeida Campos-Junior, Izabela Mamede Costa Andrade da Conceição, Júlia Meireles Nogueira, Alinne do Carmo Costa, Gerluza Aparecida Borges Silva and Erika Cristina Jorge
    Citation: BMC Genomics 2022 23:188
    Content type: Research Published on:

  28. There is a mutual hemodynamic and pathophysiological basis between the heart and brain. Glutamate (GLU) signaling plays an important role in the process of myocardial ischemia (MI) and ischemic stroke (IS). To...

    Authors: Wei Liao, Chunming He, Shaochun Yang, Man Zhou, Chuan Zeng, Muyun Luo, Junjian Yu, Shuo Hu, Yanyu Duan and Ziyou Liu
    Citation: BMC Genomics 2023 24:300
    Content type: Research Published on:

  29. Haemophilus parasuis is the causative agent of Glässer's disease in pigs. Currently, little is known about the molecular mechanisms that contribute to disease susceptibility. This study used a porcine oligonucleo...

    Authors: Jamie M Wilkinson, Carole A Sargent, Lucina Galina-Pantoja and Alexander W Tucker
    Citation: BMC Genomics 2010 11:455
    Content type: Research article Published on:

  30. When compared to primary chicken embryo fibroblast (CEF) cells, the immortal DF-1 CEF line exhibits enhanced growth rates and susceptibility to oxidative stress. Although genes responsible for cell cycle regul...

    Authors: Byung-Whi Kong, Jeong Yoon Lee, Walter G Bottje, Kentu Lassiter, Jonghyuk Lee and Douglas N Foster
    Citation: BMC Genomics 2011 12:571
    Content type: Research article Published on:

  31. MicroRNAs are small non-coding RNAs that regulate gene expression at the post-transcriptional level. While they have been implicated in various diseases, the profile changes in allergen inhalation challenge ar...

    Authors: Masatsugu Yamamoto, Amrit Singh, Jian Ruan, Gail M Gauvreau, Paul M O'Byrne, Christopher R Carlsten, J Mark FitzGerald, Louis-Philippe Boulet and Scott J Tebbutt
    Citation: BMC Genomics 2012 13:655
    Content type: Research article Published on:

  32. It has been estimated that more than 1 million workers in the United States are exposed to cobalt. Occupational exposure to 59 Co occurs mainly via inhalation and leads to various lung diseases. Cobalt is classif...

    Authors: Veronique Malard, Frederic Berenguer, Odette Prat, Sylvie Ruat, Gerard Steinmetz and Eric Quemeneur
    Citation: BMC Genomics 2007 8:147
    Content type: Research article Published on:

  33. The deposition of unconjugated bilirubin (UCB) in selected regions of the brain results in irreversible neuronal damage, or Bilirubin Encephalopathy (BE). Although UCB impairs a large number of cellular functi...

    Authors: Raffaella Calligaris, Cristina Bellarosa, Rossana Foti, Paola Roncaglia, Pablo Giraudi, Helena Krmac, Claudio Tiribelli and Stefano Gustincich
    Citation: BMC Genomics 2009 10:543
    Content type: Research article Published on:

  34. Systematic search for genes whose gain-of-function by exogenous expression confers an advantage in cell-based selective screenings is a powerful method for unbiased functional exploration of the genome, and ha...

    Authors: Maria Luisa Martelli, Claudio Isella, Alessia Mira, Limin Fu, Daniela Cantarella and Enzo Medico
    Citation: BMC Genomics 2008 9:254
    Content type: Methodology article Published on:

  35. Fusarium verticillioides causes ear rot in maize (Zea mays L.) and accumulation of mycotoxins, that affect human and animal health. Currently, chemical and agronomic measures to control Fusarium ear rot are not v...

    Authors: Alessandra Lanubile, Alberto Ferrarini, Valentina Maschietto, Massimo Delledonne, Adriano Marocco and Diana Bellin
    Citation: BMC Genomics 2014 15:710
    Content type: Research article Published on:

  36. Neutrophils are traditionally considered transcriptionally inactive. Compared to other immune cells, little is known about their transcriptional profile during interaction with pathogens.

    Authors: Maria J. Niemiec, Christian Grumaz, David Ermert, Christiane Desel, Madhu Shankar, José Pedro Lopes, Ian G. Mills, Philip Stevens, Kai Sohn and Constantin F. Urban
    Citation: BMC Genomics 2017 18:696
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2017 18:863

  37. Enzymatic plant biomass degradation by fungi is a highly complex process and one of the leading challenges in developing a biobased economy. Some industrial fungi (e.g. Aspergillus niger) have a long history of u...

    Authors: Claire Khosravi, Joanna E. Kowalczyk, Tania Chroumpi, Evy Battaglia, Maria-Victoria Aguilar Pontes, Mao Peng, Ad Wiebenga, Vivian Ng, Anna Lipzen, Guifen He, Diane Bauer, Igor V. Grigoriev and Ronald P. de Vries
    Citation: BMC Genomics 2019 20:853
    Content type: Research article Published on:

  39. The response of macrophages to danger signals is an important early stage in the immune response. Our understanding of this complex event has been furthered by microarray analysis, which allows the simultaneou...

    Authors: Kirsty Jensen, Richard Talbot, Edith Paxton, David Waddington and Elizabeth J Glass
    Citation: BMC Genomics 2006 7:224
    Content type: Research article Published on:

  41. DNA methylation (DNAm) profiling has emerged as a powerful tool for characterizing the placental methylome. However, previous studies have focused primarily on whole placental tissue, which is a mixture of epi...

    Authors: Victor Yuan, Desmond Hui, Yifan Yin, Maria S. Peñaherrera, Alexander G. Beristain and Wendy P. Robinson
    Citation: BMC Genomics 2021 22:6
    Content type: Research article Published on:

  42. Next-generation sequencing of transposon-genome junctions from a saturated bacterial mutant library (Tn-seq) is a powerful tool that permits genome-wide determination of the contribution of genes to fitness of...

    Authors: Thomas A. Hooven, Andrew J. Catomeris, Leor H. Akabas, Tara M. Randis, Duncan J. Maskell, Sarah E. Peters, Sandra Ott, Ivette Santana-Cruz, Luke J. Tallon, Hervé Tettelin and Adam J. Ratner
    Citation: BMC Genomics 2016 17:406
    Content type: Research article Published on:

  44. Blood feeding evolved independently in worms, arthropods and mammals. Among the adaptations to this peculiar diet, these animals developed an armament of salivary molecules that disarm their host's anti-bleedi...

    Authors: Juliana Alves-Silva, José MC Ribeiro, Jan Van Den Abbeele, Geoffrey Attardo, Zhengrong Hao, Lee R Haines, Marcelo B Soares, Matthew Berriman, Serap Aksoy and Michael J Lehane
    Citation: BMC Genomics 2010 11:213
    Content type: Research article Published on:

  45. The orange pigmentation of the agar cultures of many Fusarium species is due to the production of carotenoids, terpenoid pigments whose synthesis is stimulated by light. The genes of the carotenoid pathway and th...

    Authors: Macarena Ruger-Herreros, Obdulia Parra-Rivero, Javier Pardo-Medina, Francisco J. Romero-Campero, M. Carmen Limón and Javier Avalos
    Citation: BMC Genomics 2019 20:67
    Content type: Research article Published on:

  46. Insects can be models for understanding human intestinal infection and pathology. Molting, a special period during which the old insect cuticle is shed and a new one is produced, is crucial for insect developm...

    Authors: Bing Yang, Wuren Huang, Jie Zhang, Qiuyun Xu, Shoulin Zhu, Qiaoli Zhang, Brenda T. Beerntsen, Hongsheng Song and Erjun Ling
    Citation: BMC Genomics 2016 17:866
    Content type: Research article Published on:

  48. Zygosaccharomyces bailii is considered the most problematic acidic food spoilage yeast species due to its exceptional capacity to tolerate high concentrations of weak acids used as fun...

    Authors: Margarida Palma, Filipa de Canaveira Roque, Joana Fernandes Guerreiro, Nuno Pereira Mira, Lise Queiroz and Isabel Sá-Correia
    Citation: BMC Genomics 2015 16:1070
    Content type: Research article Published on:

  49. The reblooming bearded iris (Iris germanica) can bloom twice a year, in spring and autumn. The extended ornamental period makes it more popular and brings additional commercial values. However, little is known ab...

    Authors: Zhuping Fan, Yike Gao, Yi Ren, Chunjing Guan, Rong Liu and Qixiang Zhang
    Citation: BMC Genomics 2020 21:553
    Content type: Research article Published on:

  50. The Arctic charr (Salvelinus alpinus) has a highly seasonal feeding cycle that comprises long periods of voluntary fasting and a short but intense feeding period during summer. Therefore, the charr represents an ...

    Authors: Anja Striberny, Even H. Jørgensen, Christophe Klopp and Elodie Magnanou
    Citation: BMC Genomics 2019 20:529
    Content type: Research article Published on:

Featured videos

View featured videos from across the BMC-series journals

Submit manuscript

Annual Journal Metrics

  • Citation Impact 2023
    Journal Impact Factor: 3.5
    5-year Journal Impact Factor: 4.1
    Source Normalized Impact per Paper (SNIP): 1.083
    SCImago Journal Rank (SJR): 1.047

    Speed 2023
    Submission to first editorial decision (median days): 21
    Submission to acceptance (median days): 137

    Usage 2023
    Downloads: 7,167,242
    Altmetric mentions: 4,454

Follow

Sign up for article alerts and news from this journal

BMC Genomics

ISSN: 1471-2164

Contact us