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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 8 of 128

  1. Sequencing of the genome of Propionibacterium acnes produced a catalogue of genes many of which enable this organism to colonise skin and survive exposure to the elements. Despite this platform, there was little ...

    Authors: Yu-fei Lin, David Romero A, Shuang Guan, Lira Mamanova and Kenneth J McDowall
    Citation: BMC Genomics 2013 14:620
    Content type: Research article Published on:

  2. Candida albicans is an opportunistic pathogen which is responsible for widespread nosocomial infections. It encompasses a fungus specific serine/threonine protein phosphatase gene, CaPPZ1 that is involved in cati...

    Authors: Krisztina Szabó, Ágnes Jakab, Szilárd Póliska, Katalin Petrényi, Katalin Kovács, Lama Hasan Bou Issa, Tamás Emri, István Pócsi and Viktor Dombrádi
    Citation: BMC Genomics 2019 20:873
    Content type: Research article Published on:

  3. Estrogen receptors alpha (ERα) and beta (ERβ) are transcription factors (TFs) that mediate estrogen signaling and define the hormone-responsive phenotype of breast cancer (BC). The two receptors can be found c...

    Authors: Oli MV Grober, Margherita Mutarelli, Giorgio Giurato, Maria Ravo, Luigi Cicatiello, Maria Rosaria De Filippo, Lorenzo Ferraro, Giovanni Nassa, Maria Francesca Papa, Ornella Paris, Roberta Tarallo, Shujun Luo, Gary P Schroth, Vladimir Benes and Alessandro Weisz
    Citation: BMC Genomics 2011 12:36
    Content type: Research article Published on:

  4. Recent studies have underscored the role of enhancers in defining cell type-specific transcriptomes. Cell type-specific enhancers are bound by combinations of shared and cell type-specific transcription factor...

    Authors: Alexis Vandenbon, Shunsuke Teraguchi, Osamu Takeuchi, Yutaka Suzuki and Daron M Standley
    Citation: BMC Genomics 2014 15(Suppl 10):S4
    Content type: Research Published on:

    This article is part of a Supplement: Volume 15 Supplement 10

  5. Anabolic steroids, such as nandrolone, slow muscle atrophy, but the mechanisms responsible for this effect are largely unknown. Their effects on muscle size and gene expression depend upon time, and the cause ...

    Authors: Weiping Qin, Jiangping Pan, William A Bauman and Christopher P Cardozo
    Citation: BMC Genomics 2010 11:596
    Content type: Research article Published on:

  6. In the presence of drought and other desiccating stresses, plants synthesize and redistribute the phytohormone abscisic acid (ABA). ABA promotes plant water conservation by acting on specialized cells in the l...

    Authors: Rui-Sheng Wang, Sona Pandey, Song Li, Timothy E Gookin, Zhixin Zhao, Réka Albert and Sarah M Assmann
    Citation: BMC Genomics 2011 12:216
    Content type: Research article Published on:

  8. The two main genetic types in Iberian pig production show important phenotypic differences in growth, fattening and tissue composition since early developmental stages. The objective of this work was the evalu...

    Authors: Cristina Óvilo, Rita Benítez, Almudena Fernández, Yolanda Núñez, Miriam Ayuso, Ana Isabel Fernández, Carmen Rodríguez, Beatriz Isabel, Ana Isabel Rey, Clemente López-Bote and Luis Silió
    Citation: BMC Genomics 2014 15:413
    Content type: Research article Published on:

  9. Iron is an essential micronutrient for all living things, required in plants for photosynthesis, respiration and metabolism. A lack of bioavailable iron in soil leads to iron deficiency chlorosis (IDC), causin...

    Authors: Adrienne N Moran Lauter, Gregory A Peiffer, Tengfei Yin, Steven A Whitham, Dianne Cook, Randy C Shoemaker and Michelle A Graham
    Citation: BMC Genomics 2014 15:702
    Content type: Research article Published on:

  10. The invention of high throughput sequencing technologies has led to the discoveries of hundreds of thousands of genetic variants associated with thousands of human diseases. Many of these genetic variants are ...

    Authors: Meng Ma, Ying Ru, Ling-Shiang Chuang, Nai-Yun Hsu, Li-Song Shi, Jörg Hakenberg, Wei-Yi Cheng, Andrew Uzilov, Wei Ding, Benjamin S Glicksberg and Rong Chen
    Citation: BMC Genomics 2015 16(Suppl 8):S3
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 8

  11. The precise nature of how cell type specific chromatin structures at enhancer sites affect gene expression is largely unknown. Here we identified cell type specific enhancers coupled with gene expression in tw...

    Authors: Suhn Kyong Rhie, Dennis J Hazelett, Simon G Coetzee, Chunli Yan, Houtan Noushmehr and Gerhard A Coetzee
    Citation: BMC Genomics 2014 15:331
    Content type: Research article Published on:

  12. In Drosophila melanogaster, the dosage-compensation system that equalizes X-linked gene expression between males and females, thereby assuring that an appropriate balance is maintained between the expression of g...

    Authors: Philge Philip, Fredrik Pettersson and Per Stenberg
    Citation: BMC Genomics 2012 13:97
    Content type: Research article Published on:

  13. The small airway epithelium (SAE), the cell population that covers the human airway surface from the 6th generation of airway branching to the alveoli, is the major site of lung disease caused by smoking. The foc...

    Authors: Neil R Hackett, Marcus W Butler, Renat Shaykhiev, Jacqueline Salit, Larsson Omberg, Juan L Rodriguez-Flores, Jason G Mezey, Yael Strulovici-Barel, Guoqing Wang, Lukas Didon and Ronald G Crystal
    Citation: BMC Genomics 2012 13:82
    Content type: Research article Published on:

  14. The disease caused by Haemonchus contortus, a blood-feeding nematode of small ruminants, is of major economic importance worldwide. The infective third-stage larva (L3) of this gastric nematode is enclosed in a c...

    Authors: Cinzia Cantacessi, Bronwyn E Campbell, Neil D Young, Aaron R Jex, Ross S Hall, Paul JA Presidente, Jodi L Zawadzki, Weiwei Zhong, Boanerges Aleman-Meza, Alex Loukas, Paul W Sternberg and Robin B Gasser
    Citation: BMC Genomics 2010 11:266
    Content type: Research article Published on:

  15. Understanding gene expression and metabolic re-programming that occur in response to limiting nitrogen (N) conditions in crop plants is crucial for the ongoing progress towards the development of varieties wit...

    Authors: Viktoriya Coneva, Caitlin Simopoulos, José A Casaretto, Ashraf El-kereamy, David R Guevara, Jonathan Cohn, Tong Zhu, Lining Guo, Danny C Alexander, Yong-Mei Bi, Paul D McNicholas and Steven J Rothstein
    Citation: BMC Genomics 2014 15:1056
    Content type: Research article Published on:

  16. Chrysanthemum is a leading cut flower species. Most conventional cultivars flower during the fall, but the Chrysanthemum morifolium ‘Yuuka’ flowers during the summer, thereby filling a gap in the market. To date,...

    Authors: Liping Ren, Tao Liu, Yue Cheng, Jing Sun, Jiaojiao Gao, Bin Dong, Sumei Chen, Fadi Chen and Jiafu Jiang
    Citation: BMC Genomics 2016 17:673
    Content type: Research article Published on:

  17. The bacterium Pseudomonas aeruginosa is capable of three types of motilities: swimming, twitching and swarming. The latter is characterized by a fast and coordinated group movement over a semi-solid surface resul...

    Authors: Julien Tremblay and Eric Déziel
    Citation: BMC Genomics 2010 11:587
    Content type: Research article Published on:

  18. Chromatin-Immunoprecipitation coupled with deep sequencing (ChIP-seq) is used to map transcription factor occupancy and generate epigenetic profiles genome-wide. The requirement of nano-scale ChIP DNA for gene...

    Authors: Janus S Jakobsen, Frederik O Bagger, Marie S Hasemann, Mikkel B Schuster, Anne-Katrine Frank, Johannes Waage, Kristoffer Vitting-Seerup and Bo T Porse
    Citation: BMC Genomics 2015 16:46
    Content type: Methodology article Published on:

  19. Understanding hepatic zonation is important both for liver physiology and pathology. There is currently no effective systemic chemotherapy for human hepatocellular carcinoma (HCC) and its pathogenesis is of sp...

    Authors: Shu Cheng, Jean-Matthieu Prot, Eric Leclerc and Frédéric Y Bois
    Citation: BMC Genomics 2012 13:54
    Content type: Research article Published on:

  20. Emerging evidence indicates that long noncoding RNAs (lncRNAs) are important regulators of various biological processes, and their expression can be altered following certain pathological conditions, including...

    Authors: Ana C. Ayupe, Felipe Beckedorff, Konstantin Levay, Benito Yon, Yadira Salgueiro, Ramin Shiekhattar and Kevin K. Park
    Citation: BMC Genomics 2021 22:741
    Content type: Research Published on:

  21. The changes in storage reserve accumulation during maize (Zea mays L.) grain maturation are well established. However, the key molecular determinants controlling carbon flux to the grain and the partitioning of c...

    Authors: Hans Hartings, Massimiliano Lauria, Nadia Lazzaroni, Raul Pirona and Mario Motto
    Citation: BMC Genomics 2011 12:41
    Content type: Research article Published on:

  22. In the past years, several studies begun to unravel the structure, dynamical properties, and evolution of transcriptional regulatory networks. However, even those comparative studies that focus on a group of c...

    Authors: Abel D González Pérez, Evelyn González González, Vladimir Espinosa Angarica, Ana Tereza R Vasconcelos and Julio Collado-Vides
    Citation: BMC Genomics 2008 9:128
    Content type: Research article Published on:

  23. Adventitious root (AR) formation is a critical step in vegetative propagation of most ornamental plants, such as carnation. AR formation from stem cuttings is usually divided into several stages according to p...

    Authors: Carlos Villacorta-Martín, Ana Belén Sánchez-García, Joan Villanova, Antonio Cano, Miranda van de Rhee, Jorn de Haan, Manuel Acosta, Paul Passarinho and José Manuel Pérez-Pérez
    Citation: BMC Genomics 2015 16:789
    Content type: Research article Published on:

  24. High temperature shock is becoming increasingly common in our climate, affecting plant growth and productivity. The ability of a plant to survive stress is a complex phenomenon. One of the essential tissues fo...

    Authors: Krzysztof Mikołajczak, Anetta Kuczyńska, Piotr Ogrodowicz, Agnieszka Kiełbowicz-Matuk, Hanna Ćwiek-Kupczyńska, Agata Daszkowska-Golec, Iwona Szarejko, Maria Surma and Paweł Krajewski
    Citation: BMC Genomics 2022 23:177
    Content type: Research Published on:

  25. Thinning supplies of natural resources increase attention to sustainable microbial production of bio-based fuels. The strain Clostridium beijerinckii NRRL B-598 is a relatively well-described butanol producer reg...

    Authors: Karel Sedlar, Pavlina Koscova, Maryna Vasylkivska, Barbora Branska, Jan Kolek, Kristyna Kupkova, Petra Patakova and Ivo Provaznik
    Citation: BMC Genomics 2018 19:415
    Content type: Research article Published on:

  26. With the rising demand for entry to extremely high altitudes (HAs), rapid adaptability to extremely hypoxic environments is a challenge that we need to explore. Fasting was used to evaluate acute hypoxia toler...

    Authors: Ruzhou Zhao, Xiaobo Wang, Xiang Zhou, Shuai Jiang, Lin Zhang and Zhibin Yu
    Citation: BMC Genomics 2023 24:251
    Content type: Research Published on:

  27. Mammalian olfactory receptors (ORs) are subject to a remarkable but poorly understood regime of transcriptional regulation, whereby individual olfactory neurons each express only one allele of a single member ...

    Authors: Janet M Young, Ralf M Luche and Barbara J Trask
    Citation: BMC Genomics 2011 12:561
    Content type: Research article Published on:

  28. In phylogenetically diverse organisms, the 5′ ends of a subset of mRNAs are trans-spliced with a spliced leader (SL) RNA. The functions of SL trans-splicing, however, remain largely enigmatic.

    Authors: Gemma B. Danks, Heloisa Galbiati, Martina Raasholm, Yamila N. Torres Cleuren, Eivind Valen, Pavla Navratilova and Eric M. Thompson
    Citation: BMC Genomics 2019 20:908
    Content type: Research article Published on:

  29. Epigenetic modifications of histones and regulation of chromatin structure have been implicated in regulation of virulence gene families in P. falciparum. To better understand chromatin-mediated gene regulation, ...

    Authors: Scott J Westenberger, Long Cui, Neekesh Dharia, Elizabeth Winzeler and Liwang Cui
    Citation: BMC Genomics 2009 10:610
    Content type: Research article Published on:

  30. Unravelling the link between genes and environment across the life cycle is a challenging goal that requires model organisms with well-characterized life-cycles, ecological interactions in nature, tractability...

    Authors: Bruno Campos, Danielle Fletcher, Benjamín Piña, Romà Tauler and Carlos Barata
    Citation: BMC Genomics 2018 19:370
    Content type: Research article Published on:

  31. Drosophila melanogaster activates a variety of immune responses against microbial infections. However, information on the Drosophila immune response to entomopathogenic nematode infect...

    Authors: Julio C. Castillo, Todd Creasy, Priti Kumari, Amol Shetty, Upasana Shokal, Luke J. Tallon and Ioannis Eleftherianos
    Citation: BMC Genomics 2015 16:519
    Content type: Research article Published on:

  32. Alzheimer's disease (AD) is a complex disorder that involves multiple biological processes. Many genes implicated in these processes may be present in low abundance in the human brain. DNA microarray analysis ...

    Authors: Qing Yan Liu, Roy R Sooknanan, Lawrence T Malek, Maria Ribecco-Lutkiewicz, Joy X Lei, Hui Shen, Boleslaw Lach, P Roy Walker, Joel Martin and Marianna Sikorska
    Citation: BMC Genomics 2006 7:286
    Content type: Methodology article Published on:

  33. The South African claw-toed frog, Xenopus laevis, is uniquely suited for studying differences between regenerative and non-regenerative responses to CNS injury within the same organism, because some CNS neurons (...

    Authors: Jamie L. Belrose, Aparna Prasad, Morgan A. Sammons, Kurt M. Gibbs and Ben G. Szaro
    Citation: BMC Genomics 2020 21:540
    Content type: Research article Published on:

  34. Plants respond to low temperature through an intricately coordinated transcriptional network. The CBF/DREB-regulated network of genes has been shown to play a prominent role in freeze-tolerance of Arabidopsis thr...

    Authors: Chen Cheng, Kil-Young Yun, Habtom W Ressom, Bijayalaxmi Mohanty, Vladimir B Bajic, Yulin Jia, Song Joong Yun and Benildo G de los Reyes
    Citation: BMC Genomics 2007 8:175
    Content type: Research article Published on:

  35. Tandem mass tag spectrometry (TMT labeling-LC-MS/MS) was utilized to examine the global proteomes of Atlantic halibut eggs at the 1-cell-stage post fertilization. Comparisons were made between eggs judged to b...

    Authors: Ozlem Yilmaz, Anders Mangor Jensen, Torstein Harboe, Margareth Møgster, Ragnfrid Mangor Jensen, Olav Mjaavatten, Even Birkeland, Endy Spriet, Linda Sandven, Tomasz Furmanek, Frode S. Berven, Anna Wargelius and Birgitta Norberg
    Citation: BMC Genomics 2022 23:635
    Content type: Research article Published on:

  36. Darjeeling tea is a globally renowned beverage, which faces numerous obstacles in sexual reproduction, such as self-incompatibility, poor seed germination, and viability, as well as issues with vegetative prop...

    Authors: Vivek Kumar Awon, Debabrata Dutta, Saptadipa Banerjee, Soumili Pal and Gaurab Gangopadhyay
    Citation: BMC Genomics 2024 25:207
    Content type: Research Published on:

  37. Soil salinization is a worldwide problem that is intensifying because of the effects of climate change. An effective method for the reclamation of salt-affected soils involves initiating plant succession using...

    Authors: Rediet Oshone, Mariama Ngom, Feixia Chu, Samira Mansour, Mame Ourèye Sy, Antony Champion and Louis S. Tisa
    Citation: BMC Genomics 2017 18:633
    Content type: Research article Published on:

  38. Sex-related genes play a crucial role in gonadal differentiation into testes or ovaries. However, the genetic control of gonadal differentiation in Muscovy ducks remains unknown. Therefore, the objective of ou...

    Authors: Ding-Ping Bai, Yue Chen, Yu-Qiong Hu, Wen-Feng He, Yu-Zhu Shi, Qin-Ming Fan, Ru-Tang Luo and Ang Li
    Citation: BMC Genomics 2020 21:438
    Content type: Research article Published on:

  39. Lilium lancifolium, a very important cold-resistant wild flower for lily cold resistance breeding, is widely distributed in southwestern and northeastern China. To gain a better understanding of the cold signalin...

    Authors: Jingmao Wang, Yang Yang, Xiaohua Liu, Jie Huang, Qing Wang, Jiahui Gu and Yingmin Lu
    Citation: BMC Genomics 2014 15:203
    Content type: Research article Published on:

  40. Corynebacterium glutamicum is a gram-positive soil bacterium widely used for the industrial production of amino acids. There is great interest in the examination of the molecular mechanism of transcription contro...

    Authors: Christof Larisch, Diana Nakunst, Andrea T Hüser, Andreas Tauch and Jörn Kalinowski
    Citation: BMC Genomics 2007 8:4
    Content type: Research article Published on:

  41. Freezing temperatures are an abiotic stress that has a serious impact on plant growth and development in temperate regions and even threatens plant survival. The wild apple tree (Malus sieversii) needs to undergo...

    Authors: Ping Zhou, Xiaoshuang Li, Xiaojie Liu, Xuejing Wen, Yan Zhang and Daoyuan Zhang
    Citation: BMC Genomics 2021 22:681
    Content type: Research Published on:

  42. Restorative regeneration, the capacity to reform a lost body part following amputation or injury, is an important and still poorly understood process in animals. Annelids, or segmented worms, show amazing rege...

    Authors: Louis Paré, Loïc Bideau, Loeiza Baduel, Caroline Dalle, Médine Benchouaia, Stephan Q. Schneider, Lucie Laplane, Yves Clément, Michel Vervoort and Eve Gazave
    Citation: BMC Genomics 2023 24:583
    Content type: Research Published on:

  44. The genetic program, as manifested as the cellular phenotype, is in large part dictated by the cell’s protein composition. Since characterisation of the proteome remains technically laborious it is attractive ...

    Authors: Francois-Xavier Dieudonné, Patrick B. F. O’Connor, Pascale Gubler-Jaquier, Haleh Yasrebi, Beatrice Conne, Sergey Nikolaev, Stylianos Antonarakis, Pavel V. Baranov and Joseph Curran
    Citation: BMC Genomics 2015 16:986
    Content type: Research article Published on:

  45. Evidence in yeast indicates that gene expression is correlated with recombination activity and double-strand break (DSB) formation in some hotspots. Studies of nucleosome occupancy in yeast and mice also sugge...

    Authors: Andrew B Adrian and Josep M Comeron
    Citation: BMC Genomics 2013 14:794
    Content type: Research article Published on:

  46. Drought is the major constraint to increase yield in chickpea (Cicer arietinum). Improving drought tolerance is therefore of outmost importance for breeding. However, the complexity of the trait allowed only marg...

    Authors: Carlos Molina, Björn Rotter, Ralf Horres, Sripada M Udupa, Bert Besser, Luis Bellarmino, Michael Baum, Hideo Matsumura, Ryohei Terauchi, Günter Kahl and Peter Winter
    Citation: BMC Genomics 2008 9:553
    Content type: Research article Published on:

  47. Mucins are large glycoproteins implicated in protection of all mucosal surfaces. In humans and rodents, the mucin gene family has been well described and previous studies have investigated the distribution and...

    Authors: Prisca R Hoorens, Manuela Rinaldi, Robert W Li, Bruno Goddeeris, Edwin Claerebout, Jozef Vercruysse and Peter Geldhof
    Citation: BMC Genomics 2011 12:140
    Content type: Research article Published on:

  48. Tomato is an economically important crop with fruits that are a significant source of bioactive compounds such as ascorbic acid and phenolics. Nowadays, the majority of the enzymes of the biosynthetic pathways...

    Authors: Adriana Sacco, Assunta Raiola, Roberta Calafiore, Amalia Barone and Maria Manuela Rigano
    Citation: BMC Genomics 2019 20:43
    Content type: Research article Published on:

  49. Recent studies revealed that many mammalian protein-coding genes also transcribe their complementary strands. This phenomenon raises questions regarding the validity of data obtained from double-stranded cDNA ...

    Authors: Johan Vallon-Christersson, Johan Staaf, Anders Kvist, Patrik Medstrand, Åke Borg and Carlos Rovira
    Citation: BMC Genomics 2007 8:295
    Content type: Research article Published on:

  50. The soil dwelling saprotrophic non-pathogenic fungus Fusarium venenatum, routinely used in the commercial fermentation industry, is phylogenetically closely related to the globally important cereal and non-cereal...

    Authors: Robert King, Neil Andrew Brown, Martin Urban and Kim E. Hammond-Kosack
    Citation: BMC Genomics 2018 19:269
    Content type: Research article Published on:

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