Schrock RR: Reduction of dinitrogen. Proc Natl Acad Sci USA. 2006, 103 (46): 17087-10.1073/pnas.0603633103.
Article
CAS
PubMed Central
PubMed
Google Scholar
Dixon R, Kahn D: Genetic regulation of biological nitrogen fixation. Nat Rev Microbiol. 2004, 2 (8): 621-631. 10.1038/nrmicro954.
Article
CAS
PubMed
Google Scholar
Arcondeguy T, Jack R, Merrick M: P(II) signal transduction proteins, pivotal players in microbial nitrogen control. Microbiol Mol Biol Rev. 2001, 65 (1): 80-105. 10.1128/MMBR.65.1.80-105.2001.
Article
CAS
PubMed Central
PubMed
Google Scholar
Merrick MJ, Edwards RA: Nitrogen control in bacteria. Microbiol Rev. 1995, 59 (4): 604-622.
CAS
PubMed Central
PubMed
Google Scholar
Methe BA, Webster J, Nevin K, Butler J, Lovley DR: DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens. Appl Environ Microbiol. 2005, 71 (5): 2530-2538. 10.1128/AEM.71.5.2530-2538.2005.
Article
CAS
PubMed Central
PubMed
Google Scholar
Sandercock JR, Page WJ: RpoS expression and the general stress response in Azotobacter vinelandii during carbon and nitrogen diauxic shifts. J Bacteriol. 2008, 190 (3): 946-953. 10.1128/JB.01571-06.
Article
CAS
PubMed Central
PubMed
Google Scholar
Ampe F, Kiss E, Sabourdy F, Batut J: Transcriptome analysis of Sinorhizobium meliloti during symbiosis. Genome Biol. 2003, 4 (2): R15-10.1186/gb-2003-4-2-r15.
Article
PubMed Central
PubMed
Google Scholar
Uchiumi T, Ohwada T, Itakura M, Mitsui H, Nukui N, Dawadi P, Kaneko T, Tabata S, Yokoyama T, Tejima K: Expression islands clustered on the symbiosis island of the Mesorhizobium loti genome. J Bacteriol. 2004, 186 (8): 2439-2448. 10.1128/JB.186.8.2439-2448.2004.
Article
CAS
PubMed Central
PubMed
Google Scholar
Chang WS, Franck WL, Cytryn E, Jeong S, Joshi T, Emerich DW, Sadowsky MJ, Xu D, Stacey G: An oligonucleotide microarray resource for transcriptional profiling of Bradyrhizobium japonicum. Mol Plant Microbe Interact. 2007, 20 (10): 1298-1307. 10.1094/MPMI-20-10-1298.
Article
CAS
PubMed
Google Scholar
Franck WL, Chang WS, Qiu J, Sugawara M, Sadowsky MJ, Smith SA, Stacey G: Whole-genome transcriptional profiling of Bradyrhizobium japonicum during chemoautotrophic growth. J Bacteriol. 2008, 190 (20): 6697-6705. 10.1128/JB.00543-08.
Article
CAS
PubMed Central
PubMed
Google Scholar
Rediers H, Bonnecarrere V, Rainey PB, Hamonts K, Vanderleyden J, De Mot R: Development and application of a dapB-based in vivo expression technology system to study colonization of rice by the endophytic nitrogen-fixing bacterium Pseudomonas stutzeri A15. Appl Environ Microbiol. 2003, 69 (11): 6864-6874. 10.1128/AEM.69.11.6864-6874.2003.
Article
CAS
PubMed Central
PubMed
Google Scholar
Nienaber A, Huber A, Gottfert M, Hennecke H, Fischer HM: Three new NifA-regulated genes in the Bradyrhizobium japonicum symbiotic gene region discovered by competitive DNA-RNA hybridization. J Bacteriol. 2000, 182 (6): 1472-1480. 10.1128/JB.182.6.1472-1480.2000.
Article
CAS
PubMed Central
PubMed
Google Scholar
Desnoues N, Lin M, Guo X, Ma L, Carreno-Lopez R, Elmerich C: Nitrogen fixation genetics and regulation in a Pseudomonas stutzeri strain associated with rice. Microbiology. 2003, 149 (Pt 8): 2251-2262. 10.1099/mic.0.26270-0.
Article
CAS
PubMed
Google Scholar
Lalucat J, Bennasar A, Bosch R, Garcia-Valdes E, Palleroni NJ: Biology of Pseudomonas stutzeri. Microbiol Mol Biol Rev. 2006, 70 (2): 510-547. 10.1128/MMBR.00047-05.
Article
CAS
PubMed Central
PubMed
Google Scholar
Qiu Y, Zhou S, Mo X, You C, Wang D: Investigation of dinitrogen fixation bacteria isolated from rice rhizosphere. Chinese Science Bulletin (Kexue Tongbao). 1981, 26: 383-384.
Google Scholar
Vermeiren H, Willems A, Schoofs G, de Mot R, Keijers V, Hai W, Vanderleyden J: The rice inoculant strain Alcaligenes faecalis A15 is a nitrogen-fixing Pseudomonas stutzeri. Syst Appl Microbiol. 1999, 22 (2): 215-224.
Article
CAS
PubMed
Google Scholar
You C, Lin M, Fang X, Song W: Attachment of Alcaligenes to rice roots. Soil Biol Biochem. 1995, 27: 463-466. 10.1016/0038-0717(95)98620-4.
Article
CAS
Google Scholar
Xie Z, Dou Y, Ping S, Chen M, Wang G, Elmerich C, Lin M: Interaction between NifL and NifA in the nitrogen-fixing Pseudomonas stutzeri A1501. Microbiology. 2006, 152 (Pt 12): 3535-3542. 10.1099/mic.0.29171-0.
Article
CAS
PubMed
Google Scholar
He S, Chen M, Xie Z, Yan Y, Li H, Fan Y, Ping S, Lin M, Elmerich C: Involvement of GlnK, a PII protein, in control of nitrogen fixation and ammonia assimilation in Pseudomonas stutzeri A1501. Arch Microbiol. 2008, 190 (1): 1-10. 10.1007/s00203-008-0354-x.
Article
CAS
PubMed
Google Scholar
Yan Y, Yang J, Dou Y, Chen M, Ping S, Peng J, Lu W, Zhang W, Yao Z, Li H: Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. Proc Natl Acad Sci USA. 2008, 105 (21): 7564-7569. 10.1073/pnas.0801093105.
Article
CAS
PubMed Central
PubMed
Google Scholar
Setubal JC, Dos Santos P, Goldman BS, Ertesvag H, Espin G, Rubio LM, Valla S, Almeida NF, Balasubramanian D, Cromes L: The genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes. J Bacteriol. 2009
Google Scholar
Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Bohm M, Friedrich F, Hurek T, Krause L: Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72. Nat Biotechnol. 2006, 24 (11): 1385-1391. 10.1038/nbt1243.
Article
CAS
PubMed
Google Scholar
Hauser F, Pessi G, Friberg M, Weber C, Rusca N, Lindemann A, Fischer HM, Hennecke H: Dissection of the Bradyrhizobium japonicum NifA+σ54 regulon, and identification of a ferredoxin gene (fdxN) for symbiotic nitrogen fixation. Mol Genet Genomics. 2007, 278 (3): 255-271. 10.1007/s00438-007-0246-9.
Article
CAS
PubMed
Google Scholar
Arous S, Buchrieser C, Folio P, Glaser P, Namane A, Hebraud M, Hechard Y: Global analysis of gene expression in an rpoN mutant of Listeria monocytogenes. Microbiology. 2004, 150 (Pt 5): 1581-1590. 10.1099/mic.0.26860-0.
Article
CAS
PubMed
Google Scholar
Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Juarez K, Nunez C, Reguera G, DiDonato R, Postier B: Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens. BMC genomics. 2009, 10: 331-10.1186/1471-2164-10-331.
Article
PubMed Central
PubMed
Google Scholar
Fischer HM, Bruderer T, Hennecke H: Essential and non-essential domains in the Bradyrhizobium japonicum NifA protein: identification of indispensable cysteine residues potentially involved in redox reactivity and/or metal binding. Nucleic Acids Res. 1988, 16 (5): 2207-2224. 10.1093/nar/16.5.2207.
Article
CAS
PubMed Central
PubMed
Google Scholar
Fischer HM, Fritsche S, Herzog B, Hennecke H: Critical spacing between two essential cysteine residues in the interdomain linker of the Bradyrhizobium japonicum NifA protein. FEBS Lett. 1989, 255 (1): 167-171. 10.1016/0014-5793(89)81083-X.
Article
CAS
PubMed
Google Scholar
Martinez-Argudo I, Little R, Shearer N, Johnson P, Dixon R: The NifL-NifA System: a multidomain transcriptional regulatory complex that integrates environmental signals. J Bacteriol. 2004, 186 (3): 601-610. 10.1128/JB.186.3.601-610.2004.
Article
CAS
PubMed Central
PubMed
Google Scholar
Ludden PW, Roberts GP: Regulation of nitrogenase activity by reversible ADP ribosylation. Curr Top Cell Regul. 1989, 30: 23-56.
Article
CAS
PubMed
Google Scholar
Morett E, Segovia L: The σ54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J Bacteriol. 1993, 175 (19): 6067-6074.
CAS
PubMed Central
PubMed
Google Scholar
Dixon R: The oxygen-responsive NIFL-NIFA complex: a novel two-component regulatory system controlling nitrogenase synthesis in gamma-proteobacteria. Arch Microbiol. 1998, 169 (5): 371-380. 10.1007/s002030050585.
Article
CAS
PubMed
Google Scholar
Arsene F, Kaminski PA, Elmerich C: Modulation of NifA activity by PII in Azospirillum brasilense: evidence for a regulatory role of the NifA N-terminal domain. J Bacteriol. 1996, 178 (16): 4830-4838.
CAS
PubMed Central
PubMed
Google Scholar
Ninfa AJ, Atkinson MR: PII signal transduction proteins. Trends Microbiol. 2000, 8 (4): 172-179. 10.1016/S0966-842X(00)01709-1.
Article
CAS
PubMed
Google Scholar
Herrero A: New targets of the PII signal transduction protein identified in cyanobacteria. Mol Microbiol. 2004, 52 (5): 1225-1228. 10.1111/j.1365-2958.2004.04075.x.
Article
CAS
PubMed
Google Scholar
Little R, Colombo V, Leech A, Dixon R: Direct interaction of the NifL regulatory protein with the GlnK signal transducer enables the Azotobacter vinelandii NifL-NifA regulatory system to respond to conditions replete for nitrogen. J Biol Chem. 2002, 277 (18): 15472-15481. 10.1074/jbc.M112262200.
Article
CAS
PubMed
Google Scholar
Little R, Reyes-Ramirez F, Zhang Y, van Heeswijk WC, Dixon R: Signal transduction to the Azotobacter vinelandii NIFL-NIFA regulatory system is influenced directly by interaction with 2-oxoglutarate and the PII regulatory protein. The EMBO journal. 2000, 19 (22): 6041-6050. 10.1093/emboj/19.22.6041.
Article
CAS
PubMed Central
PubMed
Google Scholar
Liang JH, Nielsen GM, Lies DP, Burris RH, Roberts GP, Ludden PW: Mutations in the draT and draG genes of Rhodospirillum rubrum result in loss of regulation of nitrogenase by reversible ADP-ribosylation. J Bacteriol. 1991, 173 (21): 6903-6909.
CAS
PubMed Central
PubMed
Google Scholar
Egener T, Martin DE, Sarkar A, Reinhold-Hurek B: Role of a ferredoxin gene cotranscribed with the nifHDK operon in N2 fixation and nitrogenase "switch-off" of Azoarcus sp. strain BH72. J Bacteriol. 2001, 183 (12): 3752-3760. 10.1128/JB.183.12.3752-3760.2001.
Article
CAS
PubMed Central
PubMed
Google Scholar
Zhang Y, Burris RH, Ludden PW, Roberts GP: Presence of a second mechanism for the posttranslational regulation of nitrogenase activity in Azospirillum brasilense in response to ammonium. J Bacteriol. 1996, 178 (10): 2948-2953.
CAS
PubMed Central
PubMed
Google Scholar
Kechris KJ, Lin JC, Bickel PJ, Glazer AN: Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study. Proc Natl Acad Sci USA. 2006, 103 (25): 9584-9589. 10.1073/pnas.0603534103.
Article
CAS
PubMed Central
PubMed
Google Scholar
Dobrindt U, Hochhut B, Hentschel U, Hacker J: Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol. 2004, 2 (5): 414-424. 10.1038/nrmicro884.
Article
CAS
PubMed
Google Scholar
Lee KB, De Backer P, Aono T, Liu CT, Suzuki S, Suzuki T, Kaneko T, Yamada M, Tabata S, Kupfer DM: The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. BMC genomics. 2008, 9: 271-10.1186/1471-2164-9-271.
Article
PubMed Central
PubMed
Google Scholar
Giuntini E, Mengoni A, De Filippo C, Cavalieri D, Aubin-Horth N, Landry CR, Becker A, Bazzicalupo M: Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains. BMC genomics. 2005, 6: 158-10.1186/1471-2164-6-158.
Article
PubMed Central
PubMed
Google Scholar
Baar C, Eppinger M, Raddatz G, Simon J, Lanz C, Klimmek O, Nandakumar R, Gross R, Rosinus A, Keller H: Complete genome sequence and analysis of Wolinella succinogenes. Proc Natl Acad Sci USA. 2003, 100 (20): 11690-11695. 10.1073/pnas.1932838100.
Article
CAS
PubMed Central
PubMed
Google Scholar
Sullivan JT, Ronson CW: Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene. Proc Natl Acad Sci USA. 1998, 95 (9): 5145-5149. 10.1073/pnas.95.9.5145.
Article
CAS
PubMed Central
PubMed
Google Scholar
Lin M, You C: Denitrification and nitrogen fixation by Alcaligenes faecalis. Acta Agriculturae Nucleatae Sinica. 1987, 1: 1-7.
Google Scholar
Windgassen M, Urban A, Jaeger KE: Rapid gene inactivation in Pseudomonas aeruginosa. FEMS Microbiol Lett. 2000, 193 (2): 201-205. 10.1111/j.1574-6968.2000.tb09424.x.
Article
CAS
PubMed
Google Scholar
Schafer A, Tauch A, Jager W, Kalinowski J, Thierbach G, Puhler A: Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene. 1994, 145 (1): 69-73. 10.1016/0378-1119(94)90324-7.
Article
CAS
PubMed
Google Scholar