Mooi FR: Bordetella pertussis and vaccination: the persistence of a genetically monomorphic pathogen. Infect Genet Evol. 2010, 10 (1): 36-49. 10.1016/j.meegid.2009.10.007.
CAS
PubMed
Google Scholar
Diavatopoulos DA, Cummings CA, van der Heide HG, van Gent M, Liew S, Relman DA, Mooi FR: Characterization of a highly conserved island in the otherwise divergent Bordetella holmesii and Bordetella pertussis genomes. J Bacteriol. 2006, 188 (24): 8385-8394. 10.1128/JB.01081-06.
CAS
PubMed
PubMed Central
Google Scholar
van der Zee A, Groenendijk H, Peeters M, Mooi FR: The differentiation of Bordetella parapertussis and Bordetella bronchiseptica from humans and animals as determined by DNA polymorphism mediated by two different insertion sequence elements suggests their phylogenetic relationship. Int J Syst Bacteriol. 1996, 46 (3): 640-647. 10.1099/00207713-46-3-640.
CAS
PubMed
Google Scholar
Diavatopoulos DA, Cummings CA, Schouls LM, Brinig MM, Relman DA, Mooi FR: Bordetella pertussis, the Causative Agent of Whooping Cough, Evolved from a Distinct, Human-Associated Lineage of B. bronchiseptica. PLoSPathog. 2005, 1 (4): 373-383.
CAS
Google Scholar
van der Zee A, Mooi F, Van Embden J, Musser J: Molecular evolution and host adaptation of Bordetella spp.: phylogenetic analysis using multilocus enzyme electrophoresis and typing with three insertion sequences. J Bacteriol. 1997, 179 (21): 6609-6617.
CAS
PubMed
PubMed Central
Google Scholar
Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD, Mungall KL, et al: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. NatGenet. 2003, 35 (1): 32-40.
Google Scholar
Crowcroft NS, Stein C, Duclos P, Birmingham M: How best to estimate the global burden of pertussis?. Lancet InfectDis. 2003, 3 (7): 413-418. 10.1016/S1473-3099(03)00669-8.
CAS
Google Scholar
de Melker HE, Schellekens JF, Neppelenbroek SE, Mooi FR, Rumke HC, Conyn-van Spaendonck MA: Reemergence of pertussis in the highly vaccinated population of the Netherlands: observations on surveillance data. Emerg Infect Dis. 2000, 6 (4): 348-357. 10.3201/eid0604.000404.
CAS
PubMed
PubMed Central
Google Scholar
He Q, Mertsola J: Factors contributing to pertussis resurgence. FutureMicrobiol. 2008, 3: 329-339.
Google Scholar
Berbers GA, de Greeff SC, Mooi FR: Improving pertussis vaccination. HumVaccin. 2009, 5 (7): 497-503.
Google Scholar
de Melker HE, Versteegh FG, Schellekens JF, Teunis PF, Kretzschmar M: The incidence of Bordetella pertussis infections estimated in the population from a combination of serological surveys. J Infect. 2006, 53 (2): 106-113. 10.1016/j.jinf.2005.10.020.
PubMed
Google Scholar
Cromer BA, Goydos J, Hackell J, Mezzatesta J, Dekker C, Mortimer EA: Unrecognized pertussis infection in adolescents. Am J Dis Child. 1993, 147 (5): 575-577.
CAS
PubMed
Google Scholar
Hodder SL, Cherry JD, Mortimer EA, Ford AB, Gornbein J, Papp K: Antibody responses to Bordetella pertussis antigens and clinical correlations in elderly community residents. ClinInfectDis. 2000, 31 (1): 7-14.
CAS
Google Scholar
Ward JI, Cherry JD, Chang SJ, Partridge S, Keitel W, Edwards K, Lee M, Treanor J, Greenberg DP, Barenkamp S, et al: Bordetella Pertussis infections in vaccinated and unvaccinated adolescents and adults, as assessed in a national prospective randomized Acellular Pertussis Vaccine Trial (APERT). ClinInfectDis. 2006, 43 (2): 151-157.
Google Scholar
Halperin SA: The control of pertussis - 2007 and beyond. NEnglJ Med. 2007, 356 (2): 110-113. 10.1056/NEJMp068288.
CAS
Google Scholar
Mooi FR, van Oirschot H, Heuvelman K, van der Heide HG, Gaastra W, Willems RJ: Polymorphism in the Bordetella pertussis virulence factors P.69/pertactin and pertussis toxin in The Netherlands: temporal trends and evidence for vaccine-driven evolution. Infect Immun. 1998, 66 (2): 670-675.
CAS
PubMed
PubMed Central
Google Scholar
Kallonen T, He Q: Bordetella pertussis strain variation and evolution postvaccination. Expert Rev Vaccines. 2009, 8 (7): 863-875. 10.1586/erv.09.46.
CAS
PubMed
Google Scholar
Hozbor D, Mooi F, Flores D, Weltman G, Bottero D, Fossati S, Lara C, Gaillard ME, Pianciola L, Zurita E, et al: Pertussis epidemiology in Argentina: trends over 2004-2007. J Infect. 2009, 59 (4): 225-231. 10.1016/j.jinf.2009.07.014.
CAS
PubMed
Google Scholar
King AJ, Berbers G, van Oirschot HF, Hoogerhout P, Knipping K, Mooi FR: Role of the polymorphic region 1 of the Bordetella pertussis protein pertactin in immunity. Microbiology. 2001, 147 (Pt 11): 2885-2895.
CAS
PubMed
Google Scholar
Watanabe M, Nagai M: Effect of acellular pertussis vaccine against various strains of Bordetella pertussis in a murine model of respiratory infection. J Health Science. 2002, 48 (6): 560-564. 10.1248/jhs.48.560.
CAS
Google Scholar
Gzyl A, Augustynowicz E, Gniadek G, Rabczenko D, Dulny G, Slusarczyk J: Sequence variation in pertussis S1 subunit toxin and pertussis genes in Bordetella pertussis strains used for the whole-cell pertussis vaccine produced in Poland since 1960: efficiency of the DTwP vaccine-induced immunity against currently circulating B. pertussis isolates. Vaccine. 2004, 22 (17-18): 2122-2128. 10.1016/j.vaccine.2003.12.006.
CAS
PubMed
Google Scholar
Fingermann M, Fernandez J, Sisti F, Rodriguez ME, Gatti B, Bottero D, Graieb A, Gaillard ME, Ayala SG, Mooi FR, et al: Differences of circulating Bordetella pertussis population in Argentina from the strain used in vaccine production. Vaccine. 2006, 24 (17): 3513-3521. 10.1016/j.vaccine.2006.02.026.
CAS
PubMed
Google Scholar
Mooi FR, van Loo IHM, van Gent M, He Q, Heuvelman CJ, Bart MJ, de Greeff SC, Diavatopoulos DA, Teunis PF, Nagelkerke NJ, et al: Bordetella pertussis Strains with Increased Toxin Production Associated with Pertussis Resurgence. Emerg Infect Dis. 2009, 15 (8): 1206-1213. 10.3201/eid1508.081511.
CAS
PubMed
PubMed Central
Google Scholar
Carbonetti NH, Artamonova GV, Van Rooijen N, Ayala VI: Pertussis Toxin Targets Airway Macrophages to Promote Bordetella pertussis Infection of the Respiratory Tract. Infect Immun. 2007, 75 (4): 1713-1720. 10.1128/IAI.01578-06.
CAS
PubMed
PubMed Central
Google Scholar
Kirimanjeswara GS, Agosto LM, Kennett MJ, Bjornstad ON, Harvill ET: Pertussis toxin inhibits neutrophil recruitment to delay antibody-mediated clearance of Bordetella pertussis. JClinInvest. 2005, 115 (12): 3594-3601.
CAS
Google Scholar
van Loo IH, Mooi FR: Changes in the Dutch Bordetella pertussis population in the first 20 years after the introduction of whole-cell vaccines. Microbiology. 2002, 148 (Pt 7): 2011-2018.
CAS
PubMed
Google Scholar
Gogol EB, Cummings CA, Burns RC, Relman DA: Phase variation and microevolution at homopolymeric tracts in Bordetella pertussis. BMCGenomics. 2007, 8: 122-
Google Scholar
Maharjan RP, Gu C, Reeves PR, Sintchenko V, Gilbert GL, Lan R: Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing. Res Microbiol. 2008, 159 (9-10): 602-608. 10.1016/j.resmic.2008.08.004.
CAS
PubMed
Google Scholar
Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, Goodhead I, Rance R, Baker S, Maskell DJ, Wain J, et al: High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet. 2008, 40 (8): 987-993. 10.1038/ng.195.
CAS
PubMed
PubMed Central
Google Scholar
Monot M, Honore N, Garnier T, Araoz R, Coppee JY, Lacroix C, Sow S, Spencer JS, Truman RW, Williams DL, et al: On the origin of leprosy. Science. 2005, 308 (5724): 1040-1042. 10.1126/science/1109759.
CAS
PubMed
Google Scholar
Cummings CA, Brinig MM, Lepp PW, van de Pas S, Relman DA: Bordetella species are distinguished by patterns of substantial gene loss and host adaptation. J Bacteriol. 2004, 186 (5): 1484-1492. 10.1128/JB.186.5.1484-1492.2004.
CAS
PubMed
PubMed Central
Google Scholar
Heikkinen E, Kallonen T, Saarinen L, Sara R, King AJ, Mooi FR, Soini JT, Mertsola J, He Q: Comparative Genomics of Bordetella pertussis Reveals Progressive Gene Loss in Finnish Strains. PLoS ONE. 2007, 2 (9): e904-10.1371/journal.pone.0000904.
PubMed
PubMed Central
Google Scholar
Bouchez V, Caro V, Levillain E, Guigon G, Guiso N: Genomic content of Bordetella pertussis clinical isolates circulating in areas of intensive children vaccination. PLoSONE. 2008, 3 (6): e2437-
Google Scholar
King AJ, van Gorkom T, Pennings JL, van der Heide HG, He Q, Diavatopoulos D, Heuvelman K, van Gent M, van Leeuwen K, Mooi FR: Comparative genomic profiling of Dutch clinical Bordetella pertussis isolates using DNA microarrays: identification of genes absent from epidemic strains. BMCGenomics. 2008, 9 (1): 311-
Google Scholar
King AJ, van Gorkom T, van der Heide HG, Advani A, van der Lee S: Changes in the genomic content of circulating Bordetella pertussis strains isolated from the Netherlands, Sweden, Japan and Australia: adaptive evolution or drift?. BMC Genomics. 2010, 11 (1): 64-10.1186/1471-2164-11-64.
PubMed
PubMed Central
Google Scholar
Caro V, Bouchez V, Guiso N: Is the Sequenced Bordetella pertussis strain Tohama I representative of the species?. J Clin Microbiol. 2008, 46 (6): 2125-2128. 10.1128/JCM.02484-07.
CAS
PubMed
PubMed Central
Google Scholar
Stibitz S: The bvg regulon. Bordetella Molecular Microbiology. 2007, Horizon Bioscience, Norfolk, UK, 47-67.
Google Scholar
Novichkov PS, Wolf YI, Dubchak I, Koonin EV: Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol. 2009, 191 (1): 65-73. 10.1128/JB.01237-08.
CAS
PubMed
Google Scholar
Rocha EP, Smith JM, Hurst LD, Holden MT, Cooper JE, Smith NH, Feil EJ: Comparisons of dN/dS are time dependent for closely related bacterial genomes. J TheorBiol. 2006, 239 (2): 226-235. 10.1016/j.jtbi.2005.08.037.
CAS
Google Scholar
Yang Z, Bielawski JP: Statistical methods for detecting molecular adaptation. Trends Ecol Evol. 2000, 15 (12): 496-503. 10.1016/S0169-5347(00)01994-7.
CAS
PubMed
Google Scholar
van Loo IH, Heuvelman KJ, King AJ, Mooi FR: Multilocus sequence typing of Bordetella pertussis based on surface protein genes. JClinMicrobiol. 2002, 40 (6): 1994-2001.
CAS
Google Scholar
Packard ER, Parton R, Coote JG, Fry NK: Sequence variation and conservation in virulence-related genes of Bordetella pertussis isolates from the UK. J MedMicrobiol. 2004, 53 (Pt 5): 355-365.
CAS
Google Scholar
Panina EM, Mattoo S, Griffith N, Kozak NA, Yuk MH, Miller JF: A genome-wide screen identifies a Bordetella type III secretion effector and candidate effectors in other species. Mol Microbiol. 2005, 58 (1): 267-279. 10.1111/j.1365-2958.2005.04823.x.
CAS
PubMed
Google Scholar
French CT, Panina EM, Yeh SH, Griffith N, Arambula DG, Miller JF: The Bordetella T3SS effector BteA contains a conserved N-terminal motif that guides bacterial virulence factors to lipid rafts. Cell Microbiol. 2009
Google Scholar
Willems R, Paul A, van der Heide HG, ter Avest AR, Mooi FR: Fimbrial phase variation in Bordetella pertussis: a novel mechanism for transcriptional regulation. EMBO J. 1990, 9 (9): 2803-2809.
CAS
PubMed
PubMed Central
Google Scholar
van der Woude MW, Baumler AJ: Phase and antigenic variation in bacteria. ClinMicrobiolRev. 2004, 17 (3): 581-611. table
CAS
Google Scholar
van Gent M, de Greeff SC, van der Heide HG, Mooi FR: An investigation into the cause of the 1983 whooping cough epidemic in the Netherlands. Vaccine. 2009, 27 (13): 1898-1903. 10.1016/j.vaccine.2009.01.111.
PubMed
Google Scholar
Winfield MD, Groisman EA: Phenotypic differences between Salmonella and Escherichia coli resulting from the disparate regulation of homologous genes. Proc Natl Acad Sci USA. 2004, 101 (49): 17162-17167. 10.1073/pnas.0406038101.
CAS
PubMed
Google Scholar
Li M, Diep BA, Villaruz AE, Braughton KR, Jiang X, DeLeo FR, Chambers HF, Lu Y, Otto M: Evolution of virulence in epidemic community-associated methicillin-resistant Staphylococcus aureus. Proc Natl Acad Sci USA. 2009, 106 (14): 5883-5888. 10.1073/pnas.0900743106.
CAS
PubMed
Google Scholar
Osborne SE, Walthers D, Tomljenovic AM, Mulder DT, Silphaduang U, Duong N, Lowden MJ, Wickham ME, Waller RF, Kenney LJ, et al: Pathogenic adaptation of intracellular bacteria by rewiring a cis-regulatory input function. Proc Natl Acad Sci USA. 2009, 106 (10): 3982-3987. 10.1073/pnas.0811669106.
CAS
PubMed
Google Scholar
Perez JC, Groisman EA: Transcription factor function and promoter architecture govern the evolution of bacterial regulons. Proc Natl Acad Sci USA. 2009, 106 (11): 4319-4324. 10.1073/pnas.0810343106.
CAS
PubMed
Google Scholar
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM: Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol. 2007, 8 (7): R143-10.1186/gb-2007-8-7-r143.
PubMed
PubMed Central
Google Scholar
Guindon S, Delsuc F, Dufayard JF, Gascuel O: Estimating maximum likelihood phylogenies with PhyML. Methods Mol Biol. 2009, 537: 113-137. full_text.
CAS
PubMed
Google Scholar
Mooi FR, He Q, van Oirschot H, Mertsola J: Variation in the Bordetella pertussis virulence factors pertussis toxin and pertactin in vaccine strains and clinical isolates in Finland. Infect Immun. 1999, 67 (6): 3133-3134.
CAS
PubMed
PubMed Central
Google Scholar
Mooi FR, Hallander H, Wirsing von Konig CH, Hoet B, Guiso N: Epidemiological typing of Bordetella pertussis isolates: recommendations for a standard methodology. EurJ ClinMicrobiolInfectDis. 2000, 19 (3): 174-181.
CAS
Google Scholar
Mastrantonio P, Spigaglia P, van Oirschot H, van der Heide HG, Heuvelman K, Stefanelli P, Mooi FR: Antigenic variants in Bordetella pertussis strains isolated from vaccinated and unvaccinated children. Microbiology. 1999, 145 (Pt 8): 2069-2075. 10.1099/13500872-145-8-2069.
CAS
PubMed
Google Scholar
Tsang RS, Lau AK, Sill ML, Halperin SA, Van Caeseele P, Jamieson F, Martin IE: Polymorphisms of the fimbria fim3 gene of Bordetella pertussis strains isolated in Canada. JClinMicrobiol. 2004, 42 (11): 5364-5367.
CAS
Google Scholar
Herrou J, Debrie AS, Willery E, Renaud-Mongenie G, Locht C, Mooi F, Jacob-Dubuisson F, Antoine R: Molecular evolution of the two-component system BvgAS involved in virulence regulation in Bordetella. PLoS One. 2009, 4 (9): e6996-10.1371/journal.pone.0006996.
PubMed
PubMed Central
Google Scholar
Brinig MM, Cummings CA, Sanden GN, Stefanelli P, Lawrence A, Relman DA: Significant gene order and expression differences in Bordetella pertussis despite limited gene content variation. J Bacteriol. 2006, 188 (7): 2375-2382. 10.1128/JB.188.7.2375-2382.2006.
CAS
PubMed
PubMed Central
Google Scholar