Qiu Z, Ghosh A: A brief history of neuronal gene expression: regulatory mechanisms and cellular consequences. Neuron. 2008, 60 (3): 449-455. 10.1016/j.neuron.2008.10.039.
Article
CAS
PubMed
Google Scholar
Dijkmans TF, van Hooijdonk LW, Schouten TG, Kamphorst JT, Vellinga AC, Meerman JH, Fitzsimons CP, De Kloet ER, Vreugdenhil E: Temporal and functional dynamics of the transcriptome during nerve growth factor-induced differentiation. Journal of neurochemistry. 2008, 105 (6): 2388-2403. 10.1111/j.1471-4159.2008.05338.x.
Article
CAS
PubMed
Google Scholar
Perez-Iratxeta C, Palidwor G, Porter CJ, Sanche NA, Huska MR, Suomela BP, Muro EM, Krzyzanowski PM, Hughes E, Campbell PA: Study of stem cell function using microarray experiments. FEBS letters. 2005, 579 (8): 1795-1801. 10.1016/j.febslet.2005.02.020.
Article
CAS
PubMed
Google Scholar
Rhodes DR, Chinnaiyan AM: Integrative analysis of the cancer transcriptome. Nature genetics. 2005, 37 (Suppl): S31-37. 10.1038/ng1570.
Article
CAS
PubMed
Google Scholar
Preuss TM, Caceres M, Oldham MC, Geschwind DH: Human brain evolution: insights from microarrays. Nat Rev Genet. 2004, 5 (11): 850-860. 10.1038/nrg1469.
Article
CAS
PubMed
Google Scholar
Rajeevan MS, Ranamukhaarachchi DG, Vernon SD, Unger ER: Use of real-time quantitative PCR to validate the results of cDNA array and differential display PCR technologies. Methods (San Diego, Calif). 2001, 25 (4): 443-451.
Article
CAS
Google Scholar
Chuaqui RF, Bonner RF, Best CJ, Gillespie JW, Flaig MJ, Hewitt SM, Phillips JL, Krizman DB, Tangrea MA, Ahram M: Post-analysis follow-up and validation of microarray experiments. Nature genetics. 2002, 32 (Suppl): 509-514. 10.1038/ng1034.
Article
CAS
PubMed
Google Scholar
Do JH, Choi DK: Normalization of microarray data: single-labeled and dual-labeled arrays. Molecules and cells. 2006, 22 (3): 254-261.
CAS
PubMed
Google Scholar
Huggett J, Dheda K, Bustin S, Zumla A: Real-time RT-PCR normalisation; strategies and considerations. Genes and immunity. 2005, 6 (4): 279-284. 10.1038/sj.gene.6364190.
Article
CAS
PubMed
Google Scholar
Thellin O, Zorzi W, Lakaye B, De Borman B, Coumans B, Hennen G, Grisar T, Igout A, Heinen E: Housekeeping genes as internal standards: use and limits. Journal of biotechnology. 1999, 75 (2-3): 291-295. 10.1016/S0168-1656(99)00163-7.
Article
CAS
PubMed
Google Scholar
Antonov J, Goldstein DR, Oberli A, Baltzer A, Pirotta M, Fleischmann A, Altermatt HJ, Jaggi R: Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization. Laboratory investigation; a journal of technical methods and pathology. 2005, 85 (8): 1040-1050. 10.1038/labinvest.3700303.
Article
CAS
PubMed
Google Scholar
Fleige S, Pfaffl MW: RNA integrity and the effect on the real-time qRT-PCR performance. Molecular aspects of medicine. 2006, 27 (2-3): 126-139. 10.1016/j.mam.2005.12.003.
Article
CAS
PubMed
Google Scholar
Fleige S, Walf V, Huch S, Prgomet C, Sehm J, Pfaffl MW: Comparison of relative mRNA quantification models and the impact of RNA integrity in quantitative real-time RT-PCR. Biotechnology letters. 2006, 28 (19): 1601-1613. 10.1007/s10529-006-9127-2.
Article
CAS
PubMed
Google Scholar
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome biology. 2002, 3 (7): RESEARCH0034-10.1186/gb-2002-3-7-research0034.
Article
PubMed Central
PubMed
Google Scholar
Waxman S, Wurmbach E: De-regulation of common housekeeping genes in hepatocellular carcinoma. BMC genomics. 2007, 8: 243-10.1186/1471-2164-8-243.
Article
PubMed Central
PubMed
Google Scholar
Jung M, Ramankulov A, Roigas J, Johannsen M, Ringsdorf M, Kristiansen G, Jung K: In search of suitable reference genes for gene expression studies of human renal cell carcinoma by real-time PCR. BMC molecular biology. 2007, 8: 47-10.1186/1471-2199-8-47.
Article
PubMed Central
PubMed
Google Scholar
Rhinn H, Marchand-Leroux C, Croci N, Plotkine M, Scherman D, Escriou V: Housekeeping while brain's storming Validation of normalizing factors for gene expression studies in a murine model of traumatic brain injury. BMC molecular biology. 2008, 9: 62-10.1186/1471-2199-9-62.
Article
PubMed Central
PubMed
Google Scholar
Spinsanti G, Panti C, Lazzeri E, Marsili L, Casini S, Frati F, Fossi CM: Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies. BMC molecular biology. 2006, 7: 32-10.1186/1471-2199-7-32.
Article
PubMed Central
PubMed
Google Scholar
Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP: Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper--Excel-based tool using pair-wise correlations. Biotechnology letters. 2004, 26 (6): 509-515. 10.1023/B:BILE.0000019559.84305.47.
Article
CAS
PubMed
Google Scholar
Andersen CL, Jensen JL, Orntoft TF: Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer research. 2004, 64 (15): 5245-5250. 10.1158/0008-5472.CAN-04-0496.
Article
CAS
PubMed
Google Scholar
Akilesh S, Shaffer DJ, Roopenian D: Customized molecular phenotyping by quantitative gene expression and pattern recognition analysis. Genome research. 2003, 13 (7): 1719-1727. 10.1101/gr.533003.
Article
CAS
PubMed Central
PubMed
Google Scholar
Haller F, Kulle B, Schwager S, Gunawan B, von Heydebreck A, Sultmann H, Fuzesi L: Equivalence test in quantitative reverse transcription polymerase chain reaction: confirmation of reference genes suitable for normalization. Analytical biochemistry. 2004, 335 (1): 1-9. 10.1016/j.ab.2004.08.024.
Article
CAS
PubMed
Google Scholar
Popovici V, Goldstein DR, Antonov J, Jaggi R, Delorenzi M, Wirapati P: Selecting control genes for RT-QPCR using public microarray data. BMC bioinformatics. 2009, 10: 42-10.1186/1471-2105-10-42.
Article
PubMed Central
PubMed
Google Scholar
Lee S, Jo M, Lee J, Koh SS, Kim S: Identification of novel universal housekeeping genes by statistical analysis of microarray data. Journal of biochemistry and molecular biology. 2007, 40 (2): 226-231.
Article
CAS
PubMed
Google Scholar
de Jonge HJ, Fehrmann RS, De Bont ES, Hofstra RM, Gerbens F, Kamps WA, De Vries EG, Zee van der AG, te Meerman GJ, ter Elst A: Evidence based selection of housekeeping genes. PLoS ONE. 2007, 2 (9): e898-10.1371/journal.pone.0000898.
Article
PubMed Central
PubMed
Google Scholar
Kwon MJ, Oh E, Lee S, Roh MR, Kim SE, Lee Y, Choi YL, In YH, Park T, Koh SS: Identification of novel reference genes using multiplatform expression data and their validation for quantitative gene expression analysis. PLoS ONE. 2009, 4 (7): e6162-10.1371/journal.pone.0006162.
Article
PubMed Central
PubMed
Google Scholar
Ravni A, Bourgault S, Lebon A, Chan P, Galas L, Fournier A, Vaudry H, Gonzalez B, Eiden LE, Vaudry D: The neurotrophic effects of PACAP in PC12 cells: control by multiple transduction pathways. Journal of neurochemistry. 2006, 98 (2): 321-329. 10.1111/j.1471-4159.2006.03884.x.
Article
CAS
PubMed
Google Scholar
Levi A, Biocca S, Cattaneo A, Calissano P: The mode of action of nerve growth factor in PC12 cells. Molecular neurobiology. 1988, 2 (3): 201-226. 10.1007/BF02935346.
Article
CAS
PubMed
Google Scholar
Vaudry D, Stork PJ, Lazarovici P, Eiden LE: Signaling pathways for PC12 cell differentiation: making the right connections. Science (New York, NY). 2002, 296 (5573): 1648-1649.
Article
CAS
Google Scholar
Fujita K, Lazarovici P, Guroff G: Regulation of the differentiation of PC12 pheochromocytoma cells. Environmental health perspectives. 1989, 80: 127-142. 10.2307/3430738.
Article
CAS
PubMed Central
PubMed
Google Scholar
Sysi-Aho M, Katajamaa M, Yetukuri L, Oresic M: Normalization method for metabolomics data using optimal selection of multiple internal standards. BMC bioinformatics. 2007, 8: 93-10.1186/1471-2105-8-93.
Article
PubMed Central
PubMed
Google Scholar
Wu W, Dave N, Tseng GC, Richards T, Xing EP, Kaminski N: Comparison of normalization methods for CodeLink Bioarray data. BMC bioinformatics. 2005, 6: 309-10.1186/1471-2105-6-309.
Article
PubMed Central
PubMed
Google Scholar
Ravni A, Vaudry D, Gerdin MJ, Eiden MV, Falluel-Morel A, Gonzalez BJ, Vaudry H, Eiden LE: A cAMP-dependent, protein kinase A-independent signaling pathway mediating neuritogenesis through Egr1 in PC12 cells. Molecular pharmacology. 2008, 73 (6): 1688-1708. 10.1124/mol.107.044792.
Article
CAS
PubMed Central
PubMed
Google Scholar
Mark MD, Liu Y, Wong ST, Hinds TR, Storm DR: Stimulation of neurite outgrowth in PC12 cells by EGF and KCl depolarization: a Ca(2+)-independent phenomenon. The Journal of cell biology. 1995, 130 (3): 701-710. 10.1083/jcb.130.3.701.
Article
CAS
PubMed
Google Scholar
Pacary E, Petit E, Bernaudin M: Concomitant inhibition of prolyl hydroxylases and ROCK initiates differentiation of mesenchymal stem cells and PC12 towards the neuronal lineage. Biochemical and biophysical research communications. 2008, 377 (2): 400-406. 10.1016/j.bbrc.2008.09.145.
Article
CAS
PubMed
Google Scholar
Politis PK, Thomaidou D, Matsas R: Coordination of cell cycle exit and differentiation of neuronal progenitors. Cell cycle (Georgetown, Tex). 2008, 7 (6): 691-697.
Article
CAS
Google Scholar
Burkhalter J, Fiumelli H, Allaman I, Chatton JY, Martin JL: Brain-derived neurotrophic factor stimulates energy metabolism in developing cortical neurons. J Neurosci. 2003, 23 (23): 8212-8220.
CAS
PubMed
Google Scholar
Salton SR: Neurotrophins, growth-factor-regulated genes and the control of energy balance. The Mount Sinai journal of medicine, New York. 2003, 70 (2): 93-100.
PubMed
Google Scholar
da Silva JS, Dotti CG: Breaking the neuronal sphere: regulation of the actin cytoskeleton in neuritogenesis. Nature reviews. 2002, 3 (9): 694-704. 10.1038/nrn918.
Article
CAS
PubMed
Google Scholar
Pak CW, Flynn KC, Bamburg JR: Actin-binding proteins take the reins in growth cones. Nature reviews. 2008, 9 (2): 136-147. 10.1038/nrn2236.
Article
CAS
PubMed
Google Scholar
Suzuki T, Higgins PJ, Crawford DR: Control selection for RNA quantitation. BioTechniques. 2000, 29 (2): 332-337.
CAS
PubMed
Google Scholar
Silver N, Best S, Jiang J, Thein SL: Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR. BMC molecular biology. 2006, 7: 33-10.1186/1471-2199-7-33.
Article
PubMed Central
PubMed
Google Scholar
Thorrez L, Van Deun K, Tranchevent LC, Van Lommel L, Engelen K, Marchal K, Moreau Y, Van Mechelen I, Schuit F: Using ribosomal protein genes as reference: a tale of caution. PLoS ONE. 2008, 3 (3): e1854-10.1371/journal.pone.0001854.
Article
PubMed Central
PubMed
Google Scholar
Lafontaine DL, Tollervey D: The function and synthesis of ribosomes. Nat Rev Mol Cell Biol. 2001, 2 (7): 514-520. 10.1038/35080045.
Article
CAS
PubMed
Google Scholar
Kenmochi N, Kawaguchi T, Rozen S, Davis E, Goodman N, Hudson TJ, Tanaka T, Page DC: A map of 75 human ribosomal protein genes. Genome research. 1998, 8 (5): 509-523.
CAS
PubMed
Google Scholar
Robledo S, Idol RA, Crimmins DL, Ladenson JH, Mason PJ, Bessler M: The role of human ribosomal proteins in the maturation of rRNA and ribosome production. RNA (New York, NY). 2008, 14 (9): 1918-1929.
Article
CAS
Google Scholar
Faliks D, Meyuhas O: Coordinate regulation of ribosomal protein mRNA level in regenerating rat liver. Study with the corresponding mouse cloned cDNAs. Nucleic acids research. 1982, 10 (3): 789-801. 10.1093/nar/10.3.789.
Article
CAS
PubMed Central
PubMed
Google Scholar
Kirn-Safran CB, Dayal S, Martin-DeLeon PA, Carson DD: Cloning, expression, and chromosome mapping of the murine Hip/Rpl29 gene. Genomics. 2000, 68 (2): 210-219. 10.1006/geno.2000.6283.
Article
CAS
PubMed
Google Scholar
Wanzel M, Russ AC, Kleine-Kohlbrecher D, Colombo E, Pelicci PG, Eilers M: A ribosomal protein L23-nucleophosmin circuit coordinates Miz1 function with cell growth. Nat Cell Biol. 2008, 10: 1051-1061. 10.1038/ncb1764.
Article
CAS
PubMed
Google Scholar
He H, Sun Y: Ribosomal protein S27L is a direct p53 target that regulates apoptosis. Oncogene. 2007, 26 (19): 2707-2716. 10.1038/sj.onc.1210073.
Article
CAS
PubMed
Google Scholar
Jeon YJ, Kim IK, Hong SH, Nan H, Kim HJ, Lee HJ, Masuda ES, Meyuhas O, Oh BH, Jung YK: Ribosomal protein S6 is a selective mediator of TRAIL-apoptotic signaling. Oncogene. 2008, 27 (31): 4344-4352. 10.1038/onc.2008.73.
Article
CAS
PubMed
Google Scholar
Lee NH, Weinstock KG, Kirkness EF, Earle-Hughes JA, Fuldner RA, Marmaros S, Glodek A, Gocayne JD, Adams MD, Kerlavage AR: Comparative expressed-sequence-tag analysis of differential gene expression profiles in PC-12 cells before and after nerve growth factor treatment. Proceedings of the National Academy of Sciences of the United States of America. 1995, 92 (18): 8303-8307. 10.1073/pnas.92.18.8303.
Article
CAS
PubMed Central
PubMed
Google Scholar
Angelastro JM, Klimaschewski L, Tang S, Vitolo OV, Weissman TA, Donlin LT, Shelanski ML, Greene LA: Identification of diverse nerve growth factor-regulated genes by serial analysis of gene expression (SAGE) profiling. Proceedings of the National Academy of Sciences of the United States of America. 2000, 97 (19): 10424-10429. 10.1073/pnas.97.19.10424.
Article
CAS
PubMed Central
PubMed
Google Scholar
Too HP: Real time PCR quantification of GFRalpha-2 alternatively spliced isoforms in murine brain and peripheral tissues. Brain Res Mol Brain Res. 2003, 114 (2): 146-153. 10.1016/S0169-328X(03)00169-4.
Article
CAS
PubMed
Google Scholar
Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, Kubista M, Mueller R, Nolan T, Pfaffl MW, Shipley GL: The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clinical chemistry. 2009, 55 (4): 611-622. 10.1373/clinchem.2008.112797.
Article
CAS
PubMed
Google Scholar