Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH: Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol Ecol. 2008, 17: 1636-1647. 10.1111/j.1365-294X.2008.03666.x.
Article
CAS
PubMed
Google Scholar
Jeukens J, Renaut S, St-Cyr J, Nolte AW, Bernatchez L: The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing. Mol Ecol. 2010, 19: 5389-5403. 10.1111/j.1365-294X.2010.04934.x.
Article
PubMed
Google Scholar
Gayral PF, Weinert L, Chiari Y, Tsagkogeorga G, Ballenghien M, Galtier N: Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals. Mol Ecol Resour. 2011, 11.,
Google Scholar
Stern DL, Orgogozo V: The loci of evolution: how predictable is genetic evolution?. Evolution. 2008, 62: 2155-2177. 10.1111/j.1558-5646.2008.00450.x.
Article
PubMed Central
PubMed
Google Scholar
Carroll SB: Evo-Devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell. 2008, 134: 25-36. 10.1016/j.cell.2008.06.030.
Article
CAS
PubMed
Google Scholar
Hoekstra HE, Coyne JA: The locus of evolution: evo devo and the genetics of adaptation. Evolution. 2007, 61: 995-1016. 10.1111/j.1558-5646.2007.00105.x.
Article
PubMed
Google Scholar
Zhai J, Liu J, Liu B, Li P, Meyers BC, Chen X, Cao X: Small RNA-directed epigenetic natural variation in Arabidopsis thaliana. PLoS Genet. 2008, 4: e1000056-10.1371/journal.pgen.1000056.
Article
PubMed Central
PubMed
Google Scholar
Todesco M, Balasubramanian S, Cao J, Ott F, Sureshkumar S, Schneeberger K, Meyer RC, Altmann T, Weigel D: Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs. Curr Biol. 2012, 22: 166-170. 10.1016/j.cub.2011.11.060.
Article
CAS
PubMed
Google Scholar
Loh Y-HE, Yi SV, Streelman JT: Evolution of microRNAs and the diversification of species. Genome Biol Evol. 2011, 3: 55-65. 10.1093/gbe/evq085.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ghildiyal M, Zamore PD: Small silencing RNAs: an expanding universe. Nature Rev Genet. 2009, 10: 94-108. 10.1038/nrg2504.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kim VN, Han J, Siomi MC: Biogenesis of small RNAs in animals. Nature Rev Mol Cell Biol. 2009, 10: 126-139. 10.1038/nrm2632.
Article
CAS
Google Scholar
Filipowicz W, Bhattacharyya SN, Sonenberg N: Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?. Nature Rev Genet. 2008, 9: 102-114.
Article
CAS
PubMed
Google Scholar
Siomi MC, Sato K, Pezic D, Aravin AA: PIWI-interacting small RNAs: the vanguard of genome defence. Nature Rev Mol Cell Biol. 2011, 12: 246-258. 10.1038/nrm3089.
Article
CAS
Google Scholar
Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y: DNA methylation mediated by a microRNA pathway. Mol Cell. 2010, 38: 465-475. 10.1016/j.molcel.2010.03.008.
Article
CAS
PubMed
Google Scholar
Bartel DP, Chen C-Z: Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat Rev Genet. 2004, 5: 396-400.
Article
CAS
PubMed
Google Scholar
Sun W, Julie Li Y-S, Huang H-D, Shyy JYJ, Chien S: microRNA: a master regulator of cellular processes for bioengineering systems. Annu Rev Biomed Eng. 2010, 12: 1-27. 10.1146/annurev-bioeng-070909-105314.
Article
CAS
PubMed
Google Scholar
Lindsay MA: microRNAs and the immune response. Trends Immunol. 2008, 29: 343-351. 10.1016/j.it.2008.04.004.
Article
CAS
PubMed
Google Scholar
Xiao C, Rajewsky K: MicroRNA control in the immune system: basic principles. Cell. 2009, 136: 26-36. 10.1016/j.cell.2008.12.027.
Article
CAS
PubMed
Google Scholar
Im H-I, Kenny PJ: MicroRNAs in neuronal function and dysfunction. Trends Neurosci. 2012, 35: 325-334. 10.1016/j.tins.2012.01.004.
Article
PubMed Central
CAS
PubMed
Google Scholar
Thomson T, Lin H: The biogenesis and function of PIWI proteins and piRNAs: progress and prospect. Annu Rev Cell Dev Biol. 2009, 25: 355-376. 10.1146/annurev.cellbio.24.110707.175327.
Article
PubMed Central
CAS
PubMed
Google Scholar
Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, Hannon GJ: An epigenetic role for maternally inherited piRNAs in transposon silencing. Science. 2008, 322: 1387-1392. 10.1126/science.1165171.
Article
PubMed Central
CAS
PubMed
Google Scholar
Orsi GA, Joyce EF, Couble P, McKim KS, Loppin B: Drosophila I-R hybrid dysgenesis is associated with catastrophic meiosis and abnormal zygote formation. J Cell Sci. 2010, 123: 3515-3524. 10.1242/jcs.073890.
Article
CAS
PubMed
Google Scholar
Lee EJ, Banerjee S, Zhou H, Jammalamadaka A, Arcila M, Manjunath BS, Kosik KS: Identification of piRNAs in the central nervous system. RNA. 2011, 17: 1090-1099. 10.1261/rna.2565011.
Article
PubMed Central
CAS
PubMed
Google Scholar
Rajasethupathy P, Antonov I, Sheridan R, Frey S, Sander C, Tuschl T, Kandel ER: A role for neuronal piRNAs in the epigenetic control of memory-related synaptic plasticity. Cell. 2012, 149: 693-707. 10.1016/j.cell.2012.02.057.
Article
PubMed Central
CAS
PubMed
Google Scholar
Dharap A, Nakka VP, Vemuganti R: Altered expression of PIWI RNA in the rat brain after transient focal ischemia. Stroke. 2011, 42: 1105-1109. 10.1161/STROKEAHA.110.598391.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lee RC, Hammell CM, Ambros V: Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans. RNA. 2006, 12: 589-597. 10.1261/rna.2231506.
Article
PubMed Central
CAS
PubMed
Google Scholar
Czech B, Malone CD, Zhou R, Stark A, Schlingeheyde C, Dus M, Perrimon N, Kellis M, Wohlschlegel JA, Sachidanandam R: An endogenous small interfering RNA pathway in Drosophila. Nature. 2008, 453: 798-802. 10.1038/nature07007.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ghildiyal M, Seitz H, Horwich MD, Li C, Du T, Lee S, Xu J, Kittler ELW, Zapp ML, Weng Z: Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells. Science. 2008, 320: 1077-1081. 10.1126/science.1157396.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kawamura Y, Saito K, Kin T, Ono Y, Asai K, Sunohara T, Okada TN, Siomi MC, Siomi H: Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells. Nature. 2008, 453: 793-797. 10.1038/nature06938.
Article
CAS
PubMed
Google Scholar
Tam OH, Aravin AA, Stein P, Girard A, Murchison EP, Cheloufi S, Hodges E, Anger M, Sachidanandam R, Schultz RM: Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. Nature. 2008, 453: 534-538. 10.1038/nature06904.
Article
PubMed Central
CAS
PubMed
Google Scholar
Watanabe T, Totoki Y, Toyoda A, Kaneda M, Kuramochi-Miyagawa S, Obata Y, Chiba H, Kohara Y, Kono T, Nakano T: Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature. 2008, 453: 539-543. 10.1038/nature06908.
Article
CAS
PubMed
Google Scholar
Emerson JJ, Li W-H: The genetic basis of evolutionary change in gene expression levels. Phil Trans Roy Soc B. 2010, 365: 2581-2590. 10.1098/rstb.2010.0005.
Article
CAS
Google Scholar
Wittkopp PJ, Haerum BK, Clark AG: Evolutionary changes in cis and trans gene regulation. Nature. 2004, 430: 85-88. 10.1038/nature02698.
Article
CAS
PubMed
Google Scholar
McManus CJ, Coolon JD, Duff MO, Eipper-Mains J, Graveley BR, Wittkopp PJ: Regulatory divergence in Drosophila revealed by mRNA-seq. Genome Res. 2010, 20: 816-825. 10.1101/gr.102491.109.
Article
PubMed Central
CAS
PubMed
Google Scholar
Chen K, Rajewsky N: The evolution of gene regulation by transcription factors and microRNAs. Nat Rev Genet. 2007, 8: 93-103.
Article
CAS
PubMed
Google Scholar
Saunders MA, Liang H, Li W-H: Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci USA. 2007, 104: 3300-3305. 10.1073/pnas.0611347104.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wheat CW, Fescemyer HW, Kvist J, Tas EVA, Vera JC, Frilander MJ, Hanski I, Marden JH: Functional genomics of life history variation in a butterfly metapopulation. Mol Ecol. 2011, 20: 1813-1828. 10.1111/j.1365-294X.2011.05062.x.
Article
CAS
PubMed
Google Scholar
Kim J, Bartel DP: Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression. Nature Biotechnol. 2009, 27: 472-477. 10.1038/nbt.1540.
Article
CAS
Google Scholar
Abelson JF, Kwan KY, O'Roak BJ, Baek DY, Stillman AA, Morgan TM, Mathews CA, Pauls DL, Rašin M-R, Gunel M: Sequence variants in SLITRK1 Are associated with Tourette's Syndrome. Science. 2005, 310: 317-320. 10.1126/science.1116502.
Article
CAS
PubMed
Google Scholar
Carbonell J, Alloza E, Arce P, Borrego S, Santoyo J, Ruiz-Ferrer M, Medina I, Jimenez-Almazan J, Mendez-Vidal C, Gonzalez-del Pozo M: A map of human microRNA variation uncovers unexpectedly high levels of variability. Genome Medicine. 2012, 4: 62-10.1186/gm363.
Article
PubMed Central
CAS
PubMed
Google Scholar
Zorc M, Jevsinek Skok D, Godnic I, Calin GA, Horvat S, Jiang Z, Dovc P, Kunej T: Catalog of microRNA seed polymorphisms in vertebrates. PLoS ONE. 2012, 7: e30737-10.1371/journal.pone.0030737.
Article
PubMed Central
CAS
PubMed
Google Scholar
Georges M, Coppieters W, Charlier C: Polymorphic miRNA-mediated gene regulation: contribution to phenotypic variation and disease. Curr Opin Genet Dev. 2007, 17: 166-176. 10.1016/j.gde.2007.04.005.
Article
CAS
PubMed
Google Scholar
Clop A, Marcq F, Takeda H, Pirottin D, Tordoir X, Bibe B, Bouix J, Caiment F, Elsen J-M, Eychenne F: A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nat Genet. 2006, 38: 813-818. 10.1038/ng1810.
Article
CAS
PubMed
Google Scholar
McKinnon JS, Rundle HD: Speciation in nature: the threespine stickleback model systems. Trends Ecol Evol. 2002, 17: 480-488. 10.1016/S0169-5347(02)02579-X.
Article
Google Scholar
Schluter D: The Ecology of Adaptive Radiation. 2000, New York: Oxford University Press
Google Scholar
Kingsley DM, Peichel CL: The molecular genetics of evolutionary changes in sticklebacks. Biology of the three-spined stickleback. Edited by: Östlund-Nilsson S, Mayer I, Huntingford FA. 2007, Boca Raton: CRC Press, 41-81.
Google Scholar
Peichel CL: Fishing for the secrets of vertebrate evolution in threespine sticklebacks. Dev Dynam. 2005, 234: 815-823. 10.1002/dvdy.20564.
Article
Google Scholar
Cresko W, McGuigan K, Phillips P, Postlethwait J: Studies of threespine stickleback developmental evolution: progress and promise. Genetica. 2007, 129: 105-126.
Article
PubMed
Google Scholar
McPhail JD: Speciation and the evolution of reproductive isolation. The evolutionary biology of the threespine stickleback. Edited by: Bell MA, Foster SA. 1994, Oxford: Oxford University Press, 399-437.
Google Scholar
Wootton RJ: The Biology of Sticklebacks. 1976, London: Academic Press
Google Scholar
Wootton RJ: A Functional Biology of Sticklebacks. 1984, London: Croom Helm
Book
Google Scholar
Bell MA, Foster SA: The Evolutionary Biology of the Threespine Stickleback. 1994, Oxford: Oxford University Press
Google Scholar
Hendry AP, Bolnick DI, Berner D, Peichel CL: Along the speciation continuum in sticklebacks. J Fish Biol. 2009, 75: 2000-2036. 10.1111/j.1095-8649.2009.02419.x.
Article
CAS
PubMed
Google Scholar
Miller CT, Beleza S, Pollen AA, Schluter D, Kittles RA, Shriver MD, Kingsley DM: cis-Regulatory changes in Kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans. Cell. 2007, 131: 1179-1189. 10.1016/j.cell.2007.10.055.
Article
PubMed Central
CAS
PubMed
Google Scholar
Shapiro MD, Marks ME, Peichel CL, Blackman BK, Nereng KS, Jonsson B, Schluter D, Kingsley DM: Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks. Nature. 2004, 428: 717-723. 10.1038/nature02415.
Article
CAS
PubMed
Google Scholar
McCairns RJS, Bernatchez L: Adaptive divergence between freshwater and marine sticklebacks: insights into the role of phenotypic plasticity from an integrated analysis of candidate gene expression. Evolution. 2010, 64: 1029-1047.
Article
CAS
PubMed
Google Scholar
Kitano J, Lema SC, Luckenbach JA, Mori S, Kawagishi Y, Kusakabe M, Swanson P, Peichel CL: Adaptive divergence in the thyroid hormone signaling pathway in the stickleback radiation. Curr Biol. 2010, 20: 2124-2130. 10.1016/j.cub.2010.10.050.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lenz TL, Eizaguirre C, Rotter B, Kalbe M, Milinski M: Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis. Mol Ecol. 2013, 22: 774-786. 10.1111/j.1365-294X.2012.05756.x.
Article
PubMed Central
CAS
PubMed
Google Scholar
Leder EH, Cano JM, Leinonen T, O'Hara RB, Nikinmaa M, Primmer CR, Merilä J: Female-biased expression on the X Chromosome as a key step in sex chromosome evolution in threespine sticklebacks. Mol Biol Evol. 2010, 27: 1495-1503. 10.1093/molbev/msq031.
Article
CAS
PubMed
Google Scholar
Kitano J, Mori S, Peichel CL: Phenotypic divergence and reproductive isolation between sympatric forms of Japanese threespine sticklebacks. Biol J Linn Soc. 2007, 91: 671-685. 10.1111/j.1095-8312.2007.00824.x.
Article
Google Scholar
Higuchi M, Goto A: Genetic evidence supporting the existence of two distinct species in the genus Gasterosteus around Japan. Environ Biol Fish. 1996, 47: 1-16.
Article
Google Scholar
Kitano J, Ross JA, Mori S, Kume M, Jones FC, Chan YF, Absher DM, Grimwood J, Schmutz J, Myers RM: A role for a neo-sex chromosome in stickleback speciation. Nature. 2009, 461: 1079-1083. 10.1038/nature08441.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kitano J, Mori S, Peichel CL: Divergence of male courtship displays between sympatric forms of anadromous threespine stickleback. Behaviour. 2008, 145: 443-461. 10.1163/156853908792451430.
Article
Google Scholar
Kosik KS: The neuronal microRNA system. Nature Rev Neurosci. 2006, 7: 911-920. 10.1038/nrn2037.
Article
CAS
Google Scholar
Parsons M, Grimm C, Paya-Cano J, Fernandes C, Lin L, Philip V, Chesler E, Nietfeld W, Lehrach H, Schalkwyk L: Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains. BMC Genomics. 2012, 13: 476-10.1186/1471-2164-13-476.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lee H-J, Palkovits M, Young WS: miR-7b, a microRNA up-regulated in the hypothalamus after chronic hyperosmolar stimulation, inhibits Fos translation. Proc Natl Acad Sci USA. 2006, 103: 15669-15674. 10.1073/pnas.0605781103.
Article
PubMed Central
CAS
Google Scholar
Kefas B, Godlewski J, Comeau L, Li Y, Abounader R, Hawkinson M, Lee J, Fine H, Chiocca EA, Lawler S: microRNA-7 Inhibits the epidermal growth factor receptor and the Akt pathway and is down-regulated in Glioblastoma. Cancer Res. 2008, 68: 3566-3572. 10.1158/0008-5472.CAN-07-6639.
Article
CAS
PubMed
Google Scholar
Schonrock N, Ke YD, Humphreys D, Staufenbiel M, Ittner LM, Preiss T, Götz J: Neuronal microRNA deregulation in response to Alzheimer's disease amyloid-β. PLoS One. 2010, 5: e11070-10.1371/journal.pone.0011070.
Article
PubMed Central
PubMed
Google Scholar
Roush S, Slack FJ: The let-7 family of microRNAs. Trends Cell Biol. 2008, 18: 505-516. 10.1016/j.tcb.2008.07.007.
Article
CAS
PubMed
Google Scholar
Wulczyn FG, Smirnova L, Rybak A, Brandt C, Kwidzinski E, Ninnemann O, Strehle M, Seiler A, Schumacher S, Nitsch R: Post-transcriptional regulation of the let-7 microRNA during neural cell specification. FASEB J. 2007, 21: 415-426. 10.1096/fj.06-6130com.
Article
CAS
PubMed
Google Scholar
Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, Maller B, Hayward DC, Ball EE, Degnan B, Muller P: Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature. 2000, 408: 86-89. 10.1038/35040556.
Article
CAS
PubMed
Google Scholar
Graves JAM: Sex chromosome dynamics and Y chromosome degeneration. Cell. 2006, 124: 901-914. 10.1016/j.cell.2006.02.024.
Article
PubMed
Google Scholar
Charlesworth B, Charlesworth D: The degeneration of Y chromosomes. Philos Trans R Soc Lond Ser B. 2000, 355: 1563-1572. 10.1098/rstb.2000.0717.
Article
CAS
Google Scholar
Disteche CM: Dosage compensation of the sex chromosomes. Annu Rev Genet. 2011, 46: 537-560.
Article
Google Scholar
Ruike Y, Ichimura A, Tsuchiya S, Shimizu K, Kunimoto R, Okuno Y, Tsujimoto G: Global correlation analysis for micro-RNA and mRNA expression profiles in human cell lines. J Hum Genet. 2008
Google Scholar
Lu J, Clark AG: Impact of microRNA regulation on variation in human gene expression. Genome Res. 2012, 22: 1243-1254. 10.1101/gr.132514.111.
Article
PubMed Central
CAS
PubMed
Google Scholar
Fjose A, Zhao X-F: Inhibition of the microRNA pathway in zebrafish by siRNA. RNA Therapeutics. 2010, 629: 237-253. 10.1007/978-1-60761-657-3_15.
Article
CAS
Google Scholar
Taniguchi Y, Takeda S, Furutani-Seiki M, Kamei Y, Todo T, Sasado T, Deguchi T, Kondoh H, Mudde J, Yamazoe M: Generation of medaka gene knockout models by target-selected mutagenesis. Genome Biol. 2006, 7: 1-14.
Article
Google Scholar
Dahlem TJ, Hoshijima K, Jurynec MJ, Gunther D, Starker CG, Locke AS, Weis AM, Voytas DF, Grunwald DJ: Simple methods for generating and detecting locus-specific mutations induced with TALENs in the zebrafish genome. PLoS Genet. 2012, 8: e1002861-10.1371/journal.pgen.1002861.
Article
PubMed Central
CAS
PubMed
Google Scholar
Moore FE, Reyon D, Sander JD, Martinez SA, Blackburn JS, Khayter C, Ramirez CL, Joung JK, Langenau DM: Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs). PLoS One. 2012, 7: e37877-10.1371/journal.pone.0037877.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cade L, Reyon D, Hwang WY, Tsai SQ, Patel S, Khayter C, Joung JK, Sander JD, Peterson RT, Yeh J-RJ: Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs. Nucleic Acids Res. 2012
Google Scholar
Baillie JK, Barnett MW, Upton KR, Gerhardt DJ, Richmond TA, De Sapio F, Brennan PM, Rizzu P, Smith S, Fell M: Somatic retrotransposition alters the genetic landscape of the human brain. Nature. 2011, 479: 534-537. 10.1038/nature10531.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JWS, Green PJ, Barton GJ, Hutvagner G: Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA. 2009, 15: 2147-2160. 10.1261/rna.1738409.
Article
PubMed Central
CAS
PubMed
Google Scholar
Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA: Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA. 2010, 16: 673-695. 10.1261/rna.2000810.
Article
PubMed Central
CAS
PubMed
Google Scholar
Li Y, Luo J, Zhou H, Liao J-Y, Ma L-M, Chen Y-Q, Qu L-H: Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia. Nucleic Acids Res. 2008, 36: 6048-6055. 10.1093/nar/gkn596.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wei C, Salichos L, Wittgrove CM, Rokas A, Patton JG: Transcriptome-wide analysis of small RNA expression in early zebrafish development. RNA. 2012, 18: 915-929. 10.1261/rna.029090.111.
Article
PubMed Central
CAS
PubMed
Google Scholar
Piskurek O, Nikaido M, Boeadi BM, Okada N: Unique mammalian tRNA-derived repetitive elements in Dermopterans: The t-SINE family and its retrotransposition through multiple sources. Mol Biol Evol. 2003, 20: 1659-1668. 10.1093/molbev/msg187.
Article
CAS
PubMed
Google Scholar
Kido Y, Aono M, Yamaki T, Matsumoto K, Murata S, Saneyoshi M, Okada N: Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution. Proc Natl Acad Sci USA. 1991, 88: 2326-2330. 10.1073/pnas.88.6.2326.
Article
PubMed Central
CAS
PubMed
Google Scholar
Noor MA, Grams KL, Bertucci LA, Almendarez Y, Reiland J, Smith KR: The genetics of reproductive isolation and the potential for gene exchange between Drosophila pseudoobscura and D. persimilis via backcross hybrid males. Evolution. 2001, 55: 512-521. 10.1554/0014-3820(2001)055[0512:TGORIA]2.0.CO;2.
Article
CAS
PubMed
Google Scholar
Clark ME, O'Hara FP, Chawla A, Werren JH: Behavioral and spermatogenic hybrid male breakdown in Nasonia. Heredity. 2010, 104: 289-301. 10.1038/hdy.2009.152.
Article
PubMed Central
CAS
PubMed
Google Scholar
Davies N, Aiello A, Mallet J, Pomiankowski A, Silberglied RT: Speciation in two neotropical butterflies: extending Haldane's rule. Proc Biol Sci. 1997, 264: 845-851. 10.1098/rspb.1997.0118.
Article
PubMed Central
Google Scholar
Price DK, Boake CRB: Behavioral reproductive isolation in Drosophila silvestris, D. heteroneura, and their F1 hybrids (Diptera: Drosophilidae). J Insect Behav. 1995, 8: 595-616. 10.1007/BF01997233.
Article
Google Scholar
Stratton GE, Uetz GW: The inheritance of courtship behavior and its role as a reproductive isolaing mechanism in two species of Schizocosa wolf spiders (Araneae; Lycosidae). Evolution. 1986, 40: 129-141. 10.2307/2408610.
Article
Google Scholar
Lade BI, Thorpe WH: Dove songs as innately coded patterns of specific behaviour. Nature. 1964, 202: 366-368. 10.1038/202366a0.
Article
Google Scholar
Blass E, Bell M, Boissinot S: Accumulation and rapid decay of non-LTR retrotransposons in the genome of the three-spine stickleback. Genome Biol Evol. 2012, 4: 687-702. 10.1093/gbe/evs044.
Article
PubMed Central
PubMed
Google Scholar
Kitano J, Kawagishi Y, Mori S, Peichel CL, Makino T, Kawata M, Kusakabe M: Divergence in sex steroid hormone signaling between sympatric species of Japanese threespine stickleback. PLoS One. 2011, 6: e29253-10.1371/journal.pone.0029253.
Article
PubMed Central
CAS
Google Scholar
R Development Core Team: R: A Language and Environment for Statistical Computing. 2011, Vienna, Austria
Google Scholar
Tisdall JD: Beginning Perl for Bioinformatics. 2001, Sebastopol: O'Reilly Media
Google Scholar
Kohany O, Gentles A, Hankus L, Jurka J: Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics. 2006, 7: 474-10.1186/1471-2105-7-474.
Article
PubMed Central
PubMed
Google Scholar
Sai Lakshmi S, Agrawal S: piRNABank: a web resource on classified and clustered Piwi-interacting RNAs. Nucleic Acids Res. 2008, 36: D173-D177.
Article
PubMed Central
CAS
PubMed
Google Scholar