Demir E, Babur O, Dogrusoz U, Gursoy A, Nisanci G, Cetin-Atalay R, Ozturk M: PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinformatics. 2002, 18 (7): 996-1003. 10.1093/bioinformatics/18.7.996.
Article
CAS
PubMed
Google Scholar
Draghici S, Khatri P, Shah A, Tainsky MA: Assessing the functional bias of commercial microarrays using the onto- compare database. Biotechniques. 2003, Suppl: 55-61.
PubMed
Google Scholar
Krull M, Voss N, Choi C, Pistor S, Potapov A, Wingender E: TRANSPATH: an integrated database on signal transduction and a tool for array analysis. Nucleic Acids Res. 2003, 31 (1): 97-100. 10.1093/nar/gkg089.
Article
PubMed Central
CAS
PubMed
Google Scholar
Tanabe L, Scherf U, Smith LH, Lee JK, Hunter L, Weinstein JN: MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling. Biotechniques. 1999, 27: 1210-1217.
CAS
PubMed
Google Scholar
Rindflesch TC, Tanabe L, Weinstein JN, Hunter L: EDGAR: extraction of drugs, genes and relations from the biomedical literature. Pac Symp Biocomput. 2000, 517-528.
Google Scholar
Klein EA, Thompson IM, Lippman SM, Goodman PJ, Albanes D, Taylor PR, Coltman C: SELECT: the Selenium and Vitamin E Cancer Prevention Trial: rationale and design. Prostate Cancer Prostatic Dis. 2000, 3 (3): 145-151. 10.1038/sj.pcan.4500412.
Article
CAS
PubMed
Google Scholar
Klein EA, Thompson IM, Lippman SM, Goodman PJ, Albanes D, Taylor PR, Coltman C: SELECT: the next prostate cancer prevention trial. Selenum and Vitamin E Cancer Prevention Trial. J Urol. 2001, 166 (4): 1311-1315. 10.1097/00005392-200110000-00020.
Article
CAS
PubMed
Google Scholar
Gavin AJ, Scheetz TE, Roberts CA, O'Leary B, Braun TA, Sheffield VC, Soares MB, Robinson JP, Casavant TL: Pooled library tissue tags for EST-based gene discovery. Bioinformatics. 2002, 18 (9): 1162-1166. 10.1093/bioinformatics/18.9.1162.
Article
CAS
PubMed
Google Scholar
Hessner MJ, Wang X, Hulse K, Meyer L, Wu Y, Nye S, Guo SW, Ghosh S: Three color cDNA microarrays: quantitative assessment through the use of fluorescein-labeled probes. Nucleic Acids Res. 2003, 31 (4): e14-10.1093/nar/gng014.
Article
PubMed Central
PubMed
Google Scholar
Hessner MJ, Wang X, Khan S, Meyer L, Schlicht M, Tackes J, Datta MW, Jacob HJ, Ghosh S: Use of a three-color cDNA microarray platform to measure and control support-bound probe for improved data quality and reproducibility. Nucleic Acids Res. 2003, 31 (11): e60-10.1093/nar/gng059.
Article
PubMed Central
PubMed
Google Scholar
Homologene. [http://www.ncbi.nlm.nih.gov/HomoloGene/]
Dudoit S, Gentleman RC, Quackenbush J: Open source software for the analysis of microarray data. Biotechniques. 2003, Suppl: 45-51.
PubMed
Google Scholar
Herrero J, Dopazo J: Combining hierarchical clustering and self-organizing maps for exploratory analysis of gene expression patterns. J Proteome Res. 2002, 1 (5): 467-470. 10.1021/pr025521v.
Article
CAS
PubMed
Google Scholar
Pan W: A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics. 2002, 18 (4): 546-554. 10.1093/bioinformatics/18.4.546.
Article
CAS
PubMed
Google Scholar
NCI Cancer Genome Anatomy Project. [http://cgap.nci.nih.gov/Tissues/LibraryFinder]
Suzuki K, Koike H, Matsui H, Ono Y, Hasumi M, Nakazato H, Okugi H, Sekine Y, Oki K, Ito K: Genistein, a soy isoflavone, induces glutathione peroxidase in the human prostate cancer cell lines LNCaP and PC-3. Int J Cancer. 2002, 99 (6): 846-852. 10.1002/ijc.10428.
Article
CAS
PubMed
Google Scholar
Pollard M, Luckert PH: Influence of isoflavones in soy protein isolates on development of induced prostate-related cancers in L-W rats. Nutr Cancer. 1997, 28 (1): 41-45.
Article
CAS
PubMed
Google Scholar
Pollard M, Wolter W, Sun L: Prevention of induced prostate-related cancer by soy protein isolate/isoflavone-supplemented diet in Lobund-Wistar rats. In Vivo. 2000, 14 (3): 389-392.
CAS
PubMed
Google Scholar
Pollard M, Wolter W: Prevention of spontaneous prostate-related cancer in Lobund-Wistar rats by a soy protein isolate/isoflavone diet. Prostate. 2000, 45 (2): 101-105. 10.1002/1097-0045(20001001)45:2<101::AID-PROS3>3.3.CO;2-G.
Article
CAS
PubMed
Google Scholar
Pollard M, Wolter W, Sun L: Diet and the duration of testosterone-dependent prostate cancer in Lobund-Wistar rats. Cancer Lett. 2001, 173 (2): 127-131. 10.1016/S0304-3835(01)00673-5.
Article
CAS
PubMed
Google Scholar
Pollard M, Luckert PH: Promotional effects of testosterone and high fat diet on the development of autochthonous prostate cancer in rats. Cancer Lett. 1986, 32 (2): 223-227. 10.1016/0304-3835(86)90123-0.
Article
CAS
PubMed
Google Scholar
Pollard M, Luckert PH: Promotional effects of testosterone and dietary fat on prostate carcinogenesis in genetically susceptible rats. Prostate. 1985, 6 (1): 1-5.
Article
CAS
PubMed
Google Scholar
Chang CF, Pollard M: In vitro propagation of prostate adenocarcinoma cells from rats. Invest Urol. 1977, 14 (5): 331-334.
CAS
PubMed
Google Scholar
Liu AY, Abraham BA: Subtractive cloning of a hybrid human endogenous retrovirus and calbindin gene in the prostate cell line PC3. Cancer Res. 1991, 51 (15): 4107-4110.
CAS
PubMed
Google Scholar
Klein EA, Thompson IM, Lippman SM, Goodman PJ, Albanes D, Taylor PR, Coltman C: SELECT: the Selenium and Vitamin E Cancer Prevention Trial: rationale and design. Prostate Cancer Prostatic Dis. 2000, 3 (3): 145-151. 10.1038/sj.pcan.4500412.
Article
CAS
PubMed
Google Scholar
Klein EA, Thompson IM, Lippman SM, Goodman PJ, Albanes D, Taylor PR, Coltman C: SELECT: the next prostate cancer prevention trial. Selenum and Vitamin E Cancer Prevention Trial. J Urol. 2001, 166 (4): 1311-1315. 10.1097/00005392-200110000-00020.
Article
CAS
PubMed
Google Scholar
Ip C, Birringer M, Block E, Kotrebai M, Tyson JF, Uden PC, Lisk DJ: Chemical speciation influences comparative activity of selenium-enriched garlic and yeast in mammary cancer prevention. J Agric Food Chem. 2000, 48 (6): 2062-2070. 10.1021/jf000051f.
Article
CAS
PubMed
Google Scholar
Bhamre S, Whitin JC, Cohen HJ: Selenomethionine does not affect PSA secretion independent of its effect on LNCaP cell growth. Prostate. 2003, 54 (4): 315-321. 10.1002/pros.10184.
Article
CAS
PubMed
Google Scholar
Menter DG, Sabichi AL, Lippman SM: Selenium effects on prostate cell growth. Cancer Epidemiol Biomarkers Prev. 2000, 9 (11): 1171-1182.
CAS
PubMed
Google Scholar
Lee KW, Cohen P: Nuclear effects: unexpected intracellular actions of insulin-like growth factor binding protein-3. J Endocrinol. 2002, 175 (1): 33-40. 10.1677/joe.0.1750033.
Article
CAS
PubMed
Google Scholar
Lucia MS, Bostwick DG, Bosland M, Cockett AT, Knapp DW, Leav I, Pollard M, Rinker-Schaeffer C, Shirai T, Watkins BA: Workgroup I: rodent models of prostate cancer. Prostate. 1998, 36 (1): 49-55. 10.1002/(SICI)1097-0045(19980615)36:1<49::AID-PROS9>3.0.CO;2-6.
Article
CAS
PubMed
Google Scholar
Pollard M, Luckert PH: Chemotherapy of metastatic prostate adenocarcinomas in germfree rats. I. Effects of cyclophosphamide (NSC-26271). Cancer Treat Rep. 1976, 60 (5): 619-621.
CAS
PubMed
Google Scholar
Pollard M, Luckert PH: In vivo model systems for assessing an anti-cancer drug: responses of autochthonous and transplanted prostate tumors to cyclophosphamide. Anticancer Res. 1990, 10 (1): 33-36.
CAS
PubMed
Google Scholar
Moody D, Zou Z, McIntyre L: Cross-species hybridisation of pig RNA to human nylon microarrays. BMC Genomics. 2002, 3 (1): 27-10.1186/1471-2164-3-27.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cohen BA, Pilpel Y, Mitra RD, Church GM: Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks. Mol Biol Cell. 2002, 13 (5): 1608-1614. 10.1091/mbc.01-10-0472.
Article
PubMed Central
CAS
PubMed
Google Scholar
Schoolnik GK: Functional and comparative genomics of pathogenic bacteria. Curr Opin Microbiol. 2002, 5 (1): 20-26. 10.1016/S1369-5274(02)00280-1.
Article
CAS
PubMed
Google Scholar
Ramarathnam R, Subramaniam S: A novel microarray strategy for detecting genes and pathways in microbes with unsequenced genomes. Microb Comp Genomics. 2000, 5 (3): 153-161.
Article
CAS
PubMed
Google Scholar
Adamo ML, Shao ZM, Lanau F, Chen JC, Clemmons DR, Roberts CT, LeRoith D, Fontana JA: Insulin-like growth factor-I (IGF-I) and retinoic acid modulation of IGF-binding proteins (IGFBPs): IGFBP-2, -3, and -4 gene expression and protein secretion in a breast cancer cell line. Endocrinology. 1992, 131 (4): 1858-1866. 10.1210/en.131.4.1858.
CAS
PubMed
Google Scholar
Baxter RC: Signalling pathways involved in antiproliferative effects of IGFBP-3: a review. Mol Pathol. 2001, 54 (3): 145-148. 10.1136/mp.54.3.145.
Article
PubMed Central
CAS
PubMed
Google Scholar
Liu B, Lee HY, Weinzimer SA, Powell DR, Clifford JL, Kurie JM, Cohen P: Direct functional interactions between insulin-like growth factor-binding protein-3 and retinoid X receptor-alpha regulate transcriptional signaling and apoptosis. J Biol Chem. 2000, 275 (43): 33607-33613. 10.1074/jbc.M002547200.
Article
CAS
PubMed
Google Scholar
Menter DG, Sabichi AL, Lippman SM: Selenium effects on prostate cell growth. Cancer Epidemiol Biomarkers Prev. 2000, 9 (11): 1171-1182.
CAS
PubMed
Google Scholar
Dong Y, Zhang H, Hawthorn L, Ganther HE, Ip C: Delineation of the molecular basis for selenium-induced growth arrest in human prostate cancer cells by oligonucleotide array. Cancer Res. 2003, 63 (1): 52-59.
CAS
PubMed
Google Scholar
Stanford Microarray Facility Brown laboratory. [http://cmgm.stanford.edu/pbrown/mguide/index.html]
TIGR Software. [http://www.tigr.org/software/tm4/]
Quackenbush J: Microarray data normalization and transformation. Nat Genet. 2002, 32 (Suppl): 496-501. 10.1038/ng1032.
Article
CAS
PubMed
Google Scholar
Bioinformatics Program. [http://brc.mcw.edu]
Kukoski R, Blonigen B, Macri E, Renshaw AA, Hoffman M, Loda M, Datta MW: p27 and cyclin E/D2 associations in testicular germ cell tumors: implications for tumorigenesis. Appl Immunohistochem Mol Morphol. 2003, 11 (2): 138-143.
Article
CAS
PubMed
Google Scholar
Datta MW, Renshaw AA, Dutta A, Hoffman MA, Loughlin KR: Evaluation of cyclin expression in testicular germ cell tumors: cyclin E correlates with tumor type, advanced clinical stage, and pulmonary metastasis. Mod Pathol. 2000, 13 (6): 667-672. 10.1038/modpathol.3880117.
Article
CAS
PubMed
Google Scholar
Datta MW, Macri E, Signoretti S, Renshaw AA, Loda M: Transition from in situ to invasive testicular germ cell neoplasia is associated with the loss of p21 and gain of mdm-2 expression. Mod Pathol. 2001, 14 (5): 437-442. 10.1038/modpathol.3880331.
Article
CAS
PubMed
Google Scholar
Boulogne B, Levacher C, Durand P, Habert R: Retinoic acid receptors and retinoid X receptors in the rat testis during fetal and postnatal development: immunolocalization and implication in the control of the number of gonocytes. Biol Reprod. 1999, 61 (6): 1548-1557.
Article
CAS
PubMed
Google Scholar
Katsetos CD, Stadnicka I, Boyd JC, Ehya H, Zheng S, Soprano CM, Cooper HS, Patchefsky AS, Soprano DR, Soprano KJ: Cellular distribution of retinoic acid receptor-alpha protein in serous adenocarcinomas of ovarian, tubal, and peritoneal origin: comparison with estrogen receptor status. Am J Pathol. 1998, 153 (2): 469-480.
Article
PubMed Central
CAS
PubMed
Google Scholar