van Wijk HJ, Arts DJ, Matthews JO, Webster M, Ducro BJ, Knol EF: Genetic parameters for carcass composition and pork quality estimated in a commercial production chain. J Anim Sci. 2005, 83: 324-333.
PubMed
Google Scholar
Huff-Lonergan E, Baas TJ, Malek M, Dekkers JC, Prusa K, Rothschild MF: Correlations among selected pork quality traits. J Anim Sci. 2002, 80: 617-627.
PubMed
Google Scholar
Fahrenkrug SC, Smith TP, Freking BA, Cho J, White J, Vallet J, Wise T, Rohrer G, Pertea G, Sultana R, Quackenbush J, Keele JW: Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly. Mamm Genome. 2002, 13: 475-478. 10.1007/s00335-001-2072-4.
Article
PubMed
Google Scholar
Tuggle CK, Schmitz CB: Cloning and characterization of pig muscle cDNAs by an expressed sequence tag approach. Anim Biotechnol. 1994, 5: 1-13.
Article
Google Scholar
Wintero AK, Fredholm M, Davies W: Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. Mamm Genome. 1996, 7: 509-517. 10.1007/s003359900153.
Article
PubMed
Google Scholar
Bertani GR, Johnson RK, Robic A, Pomp D: Mapping of porcine ESTs obtained from the anterior pituitary. Anim Genet. 2003, 34: 132-134. 10.1046/j.1365-2052.2003.00962.x.
Article
PubMed
Google Scholar
Mikawa A, Suzuki H, Suzuki K, Toki D, Uenishi H, Awata T, Hamasima N: Characterization of 298 ESTs from porcine back fat tissue and their assignment to the SSRH radiation hybrid map. Mamm Genome. 2004, 15: 315-322. 10.1007/s00335-003-2323-7.
Article
PubMed
Google Scholar
Nobis W, Ren X, Suchyta SP, Suchyta TR, Zanella AJ, Coussens PM: Development of a porcine brain cDNA library, EST database, and microarray resource. Physiol Genomics. 2003, 16: 153-159. 10.1152/physiolgenomics.00099.2003.
Article
PubMed
Google Scholar
Ponsuksili S, Wimmers K, Schellander K: Application of differential display RT-PCR to identify porcine liver ESTs. Gene. 2001, 280: 75-85. 10.1016/S0378-1119(01)00775-2.
Article
PubMed
Google Scholar
Davoli R, Zambonelli P, Bigi D, Fontanesi L, Russo V: Analysis of expressed sequence tags of porcine skeletal muscle. Gene. 1999, 233: 181-188. 10.1016/S0378-1119(99)00141-9.
Article
PubMed
Google Scholar
Davoli R, Fontanesi L, Zambonelli P, Bigi D, Gellin J, Yerle M, Milc J, Braglia S, Cenci V, Cagnazzo M, Russo V: Isolation of porcine expressed sequence tags for the construction of a first genomic transcript map of the skeletal muscle in pig. Anim Genet. 2002, 33: 3-18. 10.1046/j.1365-2052.2002.00800.x.
Article
PubMed
Google Scholar
Yao J, Coussens PM, Saama P, Suchyta S, Ernst CW: Generation of expressed sequence tags from a normalized porcine skeletal muscle cDNA library. Anim Biotechnol. 2002, 13: 211-222. 10.1081/ABIO-120016190.
Article
PubMed
Google Scholar
Rink A, Santschi EM, Beattie CW: Normalized cDNA libraries from a porcine model of orthopedic implant-associated infection. Mamm Genome. 2002, 13: 198-205. 10.1007/s00335-001-2120-0.
Article
PubMed
Google Scholar
Smith TP, Fahrenkrug SC, Rohrer GA, Simmen FA, Rexroad CE, Keele JW: Mapping of expressed sequence tags from a porcine early embryonic cDNA library. Anim Genet. 2001, 32: 66-72. 10.1046/j.1365-2052.2001.00739.x.
Article
PubMed
Google Scholar
Tuggle CK, Green JA, Fitzsimmons C, Woods R, Prather RS, Malchenko S, Soares BM, Kucaba T, Crouch K, Smith C, Tack D, Robinson N, O'Leary B, Scheetz T, Casavant T, Pomp D, Edeal BJ, Zhang Y, Rothschild MF, Garwood K, Beavis W: EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human. Mamm Genome. 2003, 14: 565-579. 10.1007/s00335-002-2263-7.
Article
PubMed
Google Scholar
Caetano AR, Johnson RK, Pomp D: Generation and sequence characterization of a normalized cDNA library from swine ovarian follicles. Mamm Genome. 2003, 14: 65-70. 10.1007/s00335-002-2220-5.
Article
PubMed
Google Scholar
Whitworth K, Springer GK, Forrester LJ, Spollen WG, Ries J, Lamberson WR, Bivens N, Murphy CN, Mathialagan N, Green JA, Prather RS: Developmental expression of 2489 gene clusters during pig embryogenesis: an expressed sequence tag project. Biol Reprod. 2004, 71: 1230-1243. 10.1095/biolreprod.104.030239.
Article
PubMed
Google Scholar
Stapleton M, Carlson J, Brokstein P, Yu C, Champe M, George R, Guarin H, Kronmiller B, Pacleb J, Park S, Wan K, Rubin GM, Celniker SE: A Drosophila full-length cDNA resource. Genome Biol. 2002, 3: RESEARCH0080-10.1186/gb-2002-3-12-research0080.
Article
PubMed
PubMed Central
Google Scholar
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T: PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Nucleic Acids Res. 2004, 32: D484-488. 10.1093/nar/gkh037.
Article
PubMed
PubMed Central
Google Scholar
Fujisaki S, Sugiyama A, Eguchi T, Watanabe Y, Hiraiwa H, Honma D, Saito T, Yasue H: Analysis of a full-length cDNA library constructed from swine olfactory bulb for elucidation of expressed genes and their transcription initiation sites. J Vet Med Sci. 2004, 66: 15-23. 10.1292/jvms.66.15.
Article
PubMed
Google Scholar
Oh JH, Kim YS, Kim NS: An improved method for constructing a full-length enriched cDNA library using small amounts of total RNA as a starting material. Exp Mol Med. 2003, 35: 586-590.
Article
PubMed
Google Scholar
Maruyama K, Sugano S: Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene. 1994, 138: 171-174. 10.1016/0378-1119(94)90802-8.
Article
PubMed
Google Scholar
Oh JH, Sohn HY, Kim JM, Kim YS, Kim NS: Construction of multi-purpose vectors, pCNS and pCNS-D2, are suitable for collection and functional study of large-scale cDNAs. Plasmid. 2004, 51: 217-226. 10.1016/j.plasmid.2004.01.001.
Article
PubMed
Google Scholar
Soares MB, Bonaldo MF, Jelene P, Su L, Lawton L, Efstratiadis A: Construction and characterization of a normalized cDNA library. Proc Natl Acad Sci USA. 1994, 91: 9228-9232.
Article
PubMed
PubMed Central
Google Scholar
Ewing B, Green P: Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998, 8: 186-194.
Article
PubMed
Google Scholar
Huang X, Madan A: CAP3: A DNA sequence assembly program. Genome Res. 1999, 9: 868-877. 10.1101/gr.9.9.868.
Article
PubMed
PubMed Central
Google Scholar
Zhong S, Storch KF, Lipan O, Kao MC, Weitz CJ, Wong WH: GoSurfer : A Graphical Interactive Tool For Comparative Analysis of Large Gene Sets in Gene Ontologytrade mark Space. Appl Bioinformatics. 2004, 3: 261-264. 10.2165/00822942-200403040-00009.
Article
PubMed
Google Scholar
Bonferroni CE: Teoria statistica delle classi e calcolo delle probabilit?. 1936, Pubblicazioni del R Istituto Superiore di Scienze Economiche e Commerciali di Firenze, 8: 3-62.
Google Scholar
Quackenbush J, Liang F, Holt I, Pertea G, Upton J: The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Res. 2000, 28: 141-145. 10.1093/nar/28.1.141.
Article
PubMed
PubMed Central
Google Scholar
Anderson L: Genetic dissection of phenotypic diversity in farm animals. Nature Genet. 2001, 2: 130-138. 10.1038/35052563.
Article
Google Scholar
Wayne ML, Mclntyre LM: Combining mapping and arraying: An approach to candidate gene identification. Proc Natl Acad Sci USA. 2002, 99: 14903-14906. 10.1073/pnas.222549199.
Article
PubMed
PubMed Central
Google Scholar
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S: Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. Gene. 1997, 200: 149-156. 10.1016/S0378-1119(97)00411-3.
Article
PubMed
Google Scholar
Kato S, Sekine S, Oh SW, Kim NS, Umezawa Y, Abe N, Yokoyama-Kobayashi M, Aoki T: Construction of a human full-length cDNA bank. Gene. 1994, 150: 243-250. 10.1016/0378-1119(94)90433-2.
Article
PubMed
Google Scholar
Edery I, Chu LL, Sonenberg N, Pelletier J: An efficient strategy to isolate full-length cDNAs based on an mRNA cap retention procedure (CAPture). Mol Cell Biol. 1995, 15: 3363-3371.
Article
PubMed
PubMed Central
Google Scholar
Carninci P, Kvam C, Kitamura A, Ohsumi T, Okazaki Y, Itoh M, Kamiya M, Shibata K, Sasaki N, Izawa M, Muramatsu M, Hayashizaki Y, Schneider C: High-efficiency full-length cDNA cloning by biotinylated CAP trapper. Genomics. 1996, 37: 327-336. 10.1006/geno.1996.0567.
Article
PubMed
Google Scholar
Suzuki Y, Ishihara D, Sasaki M, Nakagawa H, Hata H, Tsunoda T, Watanabe M, Komatsu T, Ota T, Isogai T, Suyama A, Sugano S: Statistical analysis of the 5' untranslated region of human mRNA using "Oligo-Capped" cDNA libraries. Genomics. 2000, 64: 286-297. 10.1006/geno.2000.6076.
Article
PubMed
Google Scholar
Suzuki Y, Sugano S: Construction of a full-length enriched cDNA libraries. The oligo-capping method. Methods Mol Biol. 2001, 175: 143-153.
PubMed
Google Scholar
Jiang H, Whitworth KM, Bivens NJ, Ries JE, Woods RJ, Forrester LJ, Springer GK, Mathialagan N, Agca C, Prather RS, Lucy MC: Large-scale generation and analysis of expressed sequence tags from porcine ovary. Biol Reprod. 2004, 71: 1991-2002. 10.1095/biolreprod.104.031831.
Article
PubMed
Google Scholar
Dvorak CM, Hyland KA, Machado JG, Zhang Y, Fahrenkrug SC, Murtaugh MP: Gene discovery and expression profiling in porcine Peyer's patch. Vet Immunol Immunopathol. 2005, 105: 301-315. 10.1016/j.vetimm.2005.02.006.
Article
PubMed
Google Scholar
Battini R, Ferrari S, Kaczmarek L, Calabretta B, Chen ST, Baserga R: Molecular cloning of a cDNA for a human ADP/ATP carrier which is growth-regulated. J Biol Chem. 1987, 262: 4355-4359.
PubMed
Google Scholar
Zhao SH, Nettleton D, Liu W, Fitzsimmons C, Ernst CW, Raney NE, Tuggle CK: Complementary DNA macroarray analyses of differential gene expression in porcine fetal and postnatal muscle. J Anim Sci. 2003, 81: 2179-2188.
PubMed
Google Scholar
Audic S, Claverie JM: The significance of digital gene expression profiles. Genome Res. 1997, 7: 986-995.
PubMed
Google Scholar
Stekel DJ, Git Y, Falciani F: The comparison of gene expression from multiple cDNA libraries. Genome Res. 2000, 10: 2055-2061. 10.1101/gr.GR-1325RR.
Article
PubMed
PubMed Central
Google Scholar
Yu J, Farjo R, MacNee SP, Baehr W, Stambolian DE, Swaroop A: Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina. Genome Biol. 2003, 4: R65-10.1186/gb-2003-4-10-r65.
Article
PubMed
PubMed Central
Google Scholar
Bai Q, McGillivray C, da Costa N, Dornan S, Evans G, Stear MJ, Chang KC: Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles. BMC Genomics. 2003, 4: 8-10.1186/1471-2164-4-8.
Article
PubMed
PubMed Central
Google Scholar
Niewold TA, Kerstens HH, vander Meulen J, Smits MA, Hulst MM: Development of a porcine small intestinal cDNA micro-array: characterization and functional analysis of the response to enterotoxigenic E. coli. Vet Immunol Immunopathol. 2005, 105: 317-329. 10.1016/j.vetimm.2005.02.010.
Article
PubMed
Google Scholar
Caetano AR, Johnson RK, Ford JJ, Pomp D: Microarray profiling for differential gene expression in ovaries and ovarian follicles of pigs selected for increased ovulation rate. Genetics. 2004, 168: 1529-1537. 10.1534/genetics.104.029595.
Article
PubMed
PubMed Central
Google Scholar
Smith DM, Lunney JK, Martens GW, Ando A, Lee JH, Ho CS, Schook L, Renard C, Chardon P: Nomenclature for factors of the SLA class-I system, 2004. Tissue Antigens. 2005, 65: 136-149. 10.1111/j.1399-0039.2005.00337.x.
Article
PubMed
Google Scholar
Weisberg SP, McCann D, Desai M, Rosenbaum M, Leibel RL, Ferrante AW: Obesity is associated with macrophage accumulation in adipose tissue. J Clin Invest. 2003, 112: 1796-1808. 10.1172/JCI200319246.
Article
PubMed
PubMed Central
Google Scholar
Xu H, Barnes GT, Yang Q, Tan G, Yang D, Chou CJ, Sole J, Nichols A, Ross JS, Tartaglia LA, Chen H: Chronic inflammation in fat plays a crucial role in the development of obesity-related insulin resistance. J Clin Invest. 2003, 112: 1821-1830. 10.1172/JCI200319451.
Article
PubMed
PubMed Central
Google Scholar
QTL database. [http://www.animalgenome.org]