Erratum to: draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus smith 1828
Received: 11 September 2017
Accepted: 11 September 2017
Published: 25 September 2017
The original article was published in BMC Genomics 2017 18:532
Erratum:
- 1.
The following figure captions were in the incorrect order:
Overview of taxonomy of whale shark protein best matches to the nr database. Figure was constructed from best BLAST matches to the nr database using Krona [31] tool
Overview of best matches to the protein database that map to the Chordata taxonomy group
The correct Figure legend should be: Overview of taxonomy of whale shark protein best matches to the nr database. Figure was constructed from best BLAST matches to the nr database using Krona [31] tool.
Phylogeny based on alignment of conserved single-copy proteins. Silhouettes are not to scale. Accessions: Petromyzon: GCA_000148955.1, Callorhinchus: GCA_000165045.2, Latimeria: GCA_000225785.1, Danio: GCA_000002035.3, Gadus: GCA_000231765.1, Gasterosteus: GCA_000180675.1, Oryzias: version MEDAKA1 (Ensembl), Oreochromis: GCA_000188235.1, Takifugu: GCA_000180615.2, Tetraodon
The correct Figure legend should be: Overview of best matches to the protein database that map to the Chordata taxonomy group.
The correct Figure legend should be: Phylogeny based on alignment of conserved single-copy proteins. Silhouettes are not to scale. Accessions: Petromyzon: GCA_000148955.1, Callorhinchus: GCA_000165045.2, Latimeria: GCA_000225785.1, Danio: GCA_000002035.3, Gadus: GCA_000231765.1, Gasterosteus: GCA_000180675.1, Oryzias: version MEDAKA1 (Ensembl), Oreochromis: GCA_000188235.1, Takifugu: GCA_000180615.2, Tetraodon: GCA_000180735.1. Silhouette credits: Petromyzon by Gareth Monger, CC-BY; Callorhinchus by Tony Ayling, CC-BY-SA; Rhincodon by Scarlet23, vectorized by T. Michael Keesey, CC-BY-SA; Latimeria by Maija Karala, CC-BY-NC-SA; Gadus, Oreochromis, Tetraodon, Gasterosteus by Milton Tan; Danio, Oryzias, Takifugu, no copyright.
- 2.
All mentions of the GenBank ID LVEK00000000 are incorrect, and should be LVEK00000000.1. This was present in both Table 1 of the original article, and in the Availability of Data and Materials section. In updated version of Table 1 (Corrected Table 1) has been included with this Erratum.
Project information
Property | Term |
---|---|
Finishing quality | High quality draft |
Libraries used | Illumina: paired end library; 454: single end library |
Sequencing platforms | Illumina HiSeq 2000/454 GS FLX Titanium |
Fold coverage | 30× |
Assemblers | SOAPdenovo (v. 2.04) |
Gene calling method | AUGUSTUS. Proteins matched against the NCBI nr database using BLASTP, and the INTERPRO profile database using InterProScan |
Genbank ID | LVEK00000000.1 |
GenBank Date of Release | 5.11.2016 |
GOLD ID | Gp0102394 |
BIOPROJECT | PRJNA255419 |
The original article has also been corrected.
Corrected Fig. 3 :
Corrected Fig. 4 :
Corrected Fig. 5 :
Corrected Table 1 :
Notes
Declarations
Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
Authors’ Affiliations
Reference
- Read TD, Petit RA III, Joseph SJ, Alam MT, Weil MR, Ahmad M, Bhimani R, Vuong J, Haase CP, Webb DH, Tan M, Dove ADM. Draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus smith 1828. BMC Genomics. 2017;18:532. https://doi.org/10.1186/s12864-017-3926-9.View ArticlePubMedPubMed CentralGoogle Scholar