Gou X, He K, Yang H, Yuan T, Lin H, Clouse SD, Li J. Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana. BMC Genomics. 2010;11:19.
Article
PubMed Central
PubMed
Google Scholar
Shiu SH, Bleecker AB. Plant receptor-like kinase gene family: diversity, function, and signaling. Sci STKE 2001. 2001;113(re22):1–13.
Google Scholar
Walker JC, Zhang R. Relationship of a putative receptor protein kinase from maize to the S-locus glycoproteins of Brassica. Nature. 1990;345:743–6.
Article
CAS
PubMed
Google Scholar
Gao LL, Xue HW. Global analysis of expression profiles of rice receptor-like kinase genes. Mol Plant. 2012;5:143–53.
Article
CAS
PubMed
Google Scholar
Shiu SH, Bleecker AB. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci USA. 2001;98:10763–8.
Article
CAS
PubMed Central
PubMed
Google Scholar
Lehti-Shiu MD, Shiu SH. Diversity, classification and function of the plant protein kinase superfamily. Philos Trans R Soc Lond Ser B Biol Sci. 2012;367:2619–39.
Article
CAS
Google Scholar
Lehti-Shiu MD, Zou C, Hanada K, Shiu SH. Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes. Plant Physiol. 2009;150:12–26.
Article
CAS
PubMed Central
PubMed
Google Scholar
Kobe B, Deisenhofer J. The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci. 1994;19:415–21.
Article
CAS
PubMed
Google Scholar
Wang ZY, Seto H, Fujioka S, Yoshida S, Chory J. BRI1 is a critical component of a plasma-membrane receptor for plant steroids. Nature. 2001;410:380–3.
Article
CAS
PubMed
Google Scholar
Clouse SD. Brassinosteroid signal transduction: from receptor kinase activation to transcriptional networks regulating plant development. Plant Cell. 2011;23:1219–30.
Article
CAS
PubMed Central
PubMed
Google Scholar
Osakabe Y, Maruyama K, Seki M, Satou M, Shinozaki K, Yamaguchi-Shinozaki K. Leucine-rich repeat receptor-like kinase1 is a key membrane-bound regulator of abscisic acid early signaling in Arabidopsis. Plant Cell. 2005;17:1105–19.
Article
CAS
PubMed Central
PubMed
Google Scholar
Lee IC, Hong SW, Whang SS, Lim PO, Nam HG, Koo JC. Age-dependent action of an ABA-inducible receptor kinase, RPK1, as a positive regulator of senescence in Arabidopsis leaves. Plant Cell Physiol. 2011;52:651–62.
Article
CAS
PubMed
Google Scholar
Chinchilla D, Shan L, He P, de Vries S, Kemmerling B. One for all: the receptor-associated kinase BAK1. Trends Plant Sci. 2009;14:535–41.
Article
CAS
PubMed Central
PubMed
Google Scholar
Zhou F, Guo Y, Qiu LJ. Genome-wide identification and evolutionary analysis of leucine-rich repeat receptor-like protein kinase genes in soybean. BMC Plant Biol. 2016;16:58.
Article
CAS
PubMed Central
PubMed
Google Scholar
Magalhães DM, Scholte LL, Silva NV, Oliveira GC, Zipfel C, Takita MA, De Souza AA. LRR-RLK family from two citrus species: genome-wide identification and evolutionary aspects. BMC Genomics. 2016;17:623.
Article
PubMed Central
PubMed
Google Scholar
Liu PL, Xie LL, Li PW, Mao JF, Liu H, Gao SM, Shi PH, Gong JQ. Deuplication and divergence of leucine-rich repeat receptor-like protein kinase (LRR-RLK) genes in basal angiosperm. Front Plant Sci. 2016;7:1952.
PubMed Central
PubMed
Google Scholar
Liu PL, Du L, Huang Y, Gao SM, Origin YM. Diversification of leucine-rich repeat receptor-like protein kinase (LRR-RLK) genes in plants. BMC Evol Biol. 2017;17:47.
Article
CAS
PubMed Central
PubMed
Google Scholar
Fischer I, Diévart A, Droc G, Dufayard JF, Chantret N. Evolutionary dynamics of the leucine-rich repeat receptor-like kinase (LRR-RLK) subfamily in angiosperms. Plant Physiol. 2016;170:1595–610.
CAS
PubMed Central
PubMed
Google Scholar
Freeling M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annu Rev Plant Biol. 2009;60:433–53.
Article
CAS
PubMed
Google Scholar
Wu J, Wang Z, Shi Z, Zhang S, Ming R, Zhu S, Khan MA, Tao S, Korban SS, Wang H, et al. The genome of the pear (Pyrus bretschneideri Rehd.). Genome Res. 2013;23:396–408.
Article
CAS
PubMed Central
PubMed
Google Scholar
Himmelreich R, Hilbert H, Plagens H, Pirkl E, Li BC, Herrmann R. Complete sequence analysis of the genome of the bacterium mycoplasma pneumoniae. Nucleic Acids Res. 1996;24:4420–49.
Article
CAS
PubMed Central
PubMed
Google Scholar
Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, et al. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature. 1997;390:364–70.
Article
CAS
PubMed
Google Scholar
Li WH, Gu Z, Wang H, Nekrutenko A. Evolutionary analyses of the human genome. Nature. 2001;409:847–9.
Article
CAS
PubMed
Google Scholar
Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, et al. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature. 2000;408:816–20.
Article
PubMed
Google Scholar
Zhou H, Yin H, Chen J, Liu X, Gao Y, Wu J, Zhang S. Gene-expression profile of developing pollen tube of Pyrus bretschneideri. Gene Expr Patterns. 2016;20:11–21.
Article
CAS
PubMed
Google Scholar
Chang F, Gu Y, Ma H, Yang Z. AtPRK2 promotes ROP1 activation via RopGEFs in the control of polarized pollen tube growth. Mol Plant. 2013;6:1187–201.
Article
CAS
PubMed
Google Scholar
Pitorre D, Llauro C, Jobet E, Guilleminot J, Brizard JP, Delseny M, Lasserre E. RLK7, a leucine-rich repeat receptor-like kinase, is required for proper germination speed and tolerance to oxidative stress in Arabidopsis thaliana. Planta. 2010;232:1339–53.
Article
CAS
PubMed
Google Scholar
Kang C, Darwish O, Geretz A, Shahan R, Alkharouf N, Liu Z. Genome-scale transcriptomic insights into early-stage fruit development in woodland strawberry Fragaria vesca. Plant Cell. 2013;25:1960–78.
Article
CAS
PubMed Central
PubMed
Google Scholar
Liu Y, Huang X, Li M, He P, Zhang Y. Loss-of-function of Arabidopsis receptor-like kinase BIR1 activates cell death and defense responses mediated by BAK1 and SOBIR1. New Phytol. 2016;212:637–45.
Article
CAS
PubMed
Google Scholar
Shiu SH, Karlowski WM, Pan R, Tzeng YH, Mayer KF, Li WH. Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. Plant Cell. 2004;16:1220–34.
Article
CAS
PubMed Central
PubMed
Google Scholar
Song D, Li G, Song F, Zheng Z. Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice. Mol Biol Rep. 2008;35:275–83.
Article
CAS
PubMed
Google Scholar
Torii KU. Leucine-rich repeat receptor kinases in plants: structure, function, and signal transduction pathways. Int Rev Cytol. 2004;234:1–46.
Article
CAS
PubMed
Google Scholar
Hu X, Reddy AS. Cloning and expression of a PR5-like protein from Arabidopsis: inhibition of fungal growth by bacterially expressed protein. Plant Mol Biol. 1997;34:949–59.
Article
CAS
PubMed
Google Scholar
Wang X, Zafian P, Choudhary M, Lawton M. The PR5K receptor protein kinase from Arabidopsis thaliana is structurally related to a family of plant defense proteins. Proc Natl Acad Sci USA. 1996;93:2598–602.
Article
CAS
PubMed Central
PubMed
Google Scholar
Decreux A, Thomas A, Spies B, Brasseur R, Van Cutsem P, Messiaen J. Vitro characterization of the homogalacturonan-binding domain of the wall-associated kinase WAK1 using site-directed mutagenesis. Phytochemistry. 2006;67:1068–79.
Article
CAS
PubMed
Google Scholar
He ZH, Cheeseman I, He D, Kohorn BD. A cluster of five cell wall-associated receptor kinase genes, Wak1-5, are expressed in specific organs of Arabidopsis. Plant Mol Biol. 1999;39:1189–96.
Article
CAS
PubMed
Google Scholar
Chen X, Shang J, Chen D, Lei C, Zou Y, Zhai W, Liu G, Xu J, Ling Z, Cao G, et al. A B-lectin receptor kinase gene conferring rice blast resistance. The. Plant J. 2006;46:794–804.
Article
CAS
PubMed
Google Scholar
Navarro-Gochicoa MT, Camut S, Timmers AC, Niebel A, Herve C, Boutet E, Bono JJ, Imberty A, Cullimore JV. Characterization of four lectin-like receptor kinases expressed in roots of Medicago Truncatula. Structure, location, regulation of expression, and potential role in the symbiosis with Sinorhizobium meliloti. Plant Physiol. 2003;133:1893–910.
Article
CAS
PubMed Central
PubMed
Google Scholar
Becraft PW, Stinard PS, DR MC. CRINKLY4: A TNFR-like receptor kinase involved in maize epidermal differentiation. Science. 1996;273:1406–9.
Article
CAS
PubMed
Google Scholar
Jin P, Guo T, Becraft PW. The maize CR4 receptor-like kinase mediates a growth factor-like differentiation response. Genesis. 2000;27:104–16.
Article
CAS
PubMed
Google Scholar
Stein JC, Howlett B, Boyes DC, Nasrallah ME, Nasrallah JB. Molecular cloning of a putative receptor protein kinase gene encoded at the self-incompatibility locus of Brassica oleracea. Proc Natl Acad Sci USA. 1991;88:8816–20.
Article
CAS
PubMed Central
PubMed
Google Scholar
Chinchilla D, Zipfel C, Robatzek S, Kemmerling B, Nurnberger T, Jones JD, Felix G, Boller TA. Flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature. 2007;448:497–500.
Article
CAS
PubMed
Google Scholar
Gomez-Gomez L, Boller T. FLS2: an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis. Mol Cell. 2000;5:1003–11.
Article
CAS
PubMed
Google Scholar
Wu Y, Zhou JM. Receptor-like kinases in plant innate immunity. J Integr Plant Biol. 2013;55:1271–86.
Article
CAS
PubMed
Google Scholar
Lehti-Shiu MD, Zou C, Shiu S-H. Origin, diversity, expansion history, and functional evolution of the plant receptor-like kinase/pelle family. In: Receptor-like kinases in plants. Berlin Heidelberg: Springer; 2012. p. 1–22.
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, et al. The genome of the domesticated apple (Malus x domestica Borkh.). Nat Genet. 2010;42:833–9.
Article
CAS
PubMed
Google Scholar
Jung S, Staton M, Lee T, Blenda A, Svancara R, Abbott A, Main DGDR. (Genome database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data. Nucleic Acids Res. 2008;36:D1034–40.
Article
CAS
PubMed
Google Scholar
Hughes AL. The evolution of functionally novel proteins after gene duplication. Proc Biol Sci. 1994;256:119–24.
Article
CAS
PubMed
Google Scholar
Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol. 2003;18:292–8.
Article
Google Scholar
Gao M, Wang X, Wang D, Xu F, Ding X, Zhang Z, Bi D, Cheng YT, Chen S, Li X, et al. Regulation of cell death and innate immunity by two receptor-like kinases in Arabidopsis. Cell Host Microbe. 2009;6:34–44.
Article
CAS
PubMed
Google Scholar
Vogler F, Schmalzl C, Englhart M, Bircheneder M, Sprunck S. Brassinosteroids promote Arabidopsis pollen germination and growth. Plant Reprod. 2014;27:153–67.
Article
CAS
PubMed
Google Scholar
Heese A, Hann DR, Gimenez-Ibanez S, Jones AM, He K, Li J, Schroeder JI, Peck SC, Rathjen JP. The receptor-like kinase SERK3/BAK1 is a central regulator of innate immunity in plants. Proc Natl Acad Sci USA. 2007;104:12217–22.
Article
CAS
PubMed Central
PubMed
Google Scholar
Nam KH, Li J. BRI1/BAK1, a receptor kinase pair mediating brassinosteroid signaling. Cell. 2002;110:203–12.
Article
CAS
PubMed
Google Scholar
Escobar-Restrepo JM, Huck N, Kessler S, Gagliardini V, Gheyselinck J, Yang WC, Grossniklaus U. The FERONIA receptor-like kinase mediates male-female interactions during pollen tube reception. Science. 2007;317:656–60.
Article
CAS
PubMed
Google Scholar
Huck N, Moore JM, Federer M, Grossniklaus U. The Arabidopsis mutant feronia disrupts the female gametophytic control of pollen tube reception. Development. 2003;130:2149–59.
Article
CAS
PubMed
Google Scholar
Kessler SA, Shimosato-Asano H, Keinath NF, Wuest SE, Ingram G, Panstruga R, Grossniklaus U. Conserved molecular components for pollen tube reception and fungal invasion. Science. 2010;330:968–71.
Article
CAS
PubMed
Google Scholar
Liu J, Chen N, Grant JN, Cheng ZM, Stewart CN Jr, Hewezi T. Soybean kinome: functional classification and gene expression patterns. J Exp Bot. 2015;66:1919–34.
Article
CAS
PubMed Central
PubMed
Google Scholar
Zou Y, Liu X, Wang Q, Chen Y, Liu C, Qiu Y, Zhang W. OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice. Biochim Biophys Acta. 2014;1840:1676–85.
Article
CAS
PubMed
Google Scholar
Sijacic P, Liu Z. Novel insights from live-imaging in shoot meristem development. J Integr Plant Biol. 2010;52:393–9.
Article
CAS
PubMed
Google Scholar
Jinn TL, Stone JM, Walker JCHAESA. An Arabidopsis leucine-rich repeat receptor kinase, controls floral organ abscission. Genes Dev. 2000;14:108–17.
CAS
PubMed Central
PubMed
Google Scholar
Finn RD, Clements J, Eddy SRHMMER. Web server: interactive sequence similarity searching. Nucleic Acids Res. 2011;39:W29–37.
Article
CAS
PubMed Central
PubMed
Google Scholar
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, et al. Pfam: the protein families database. Nucleic Acids Res. 2014;42:D222–30.
Article
CAS
PubMed
Google Scholar
Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30:1312–3.
Article
CAS
PubMed Central
PubMed
Google Scholar
Edgar RCMUSCLE. Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32:1792–7.
Article
CAS
PubMed Central
PubMed
Google Scholar
Pattengale ND, Alipour M, Bininda-Emonds OR, Moret BM, Stamatakis A. How many bootstrap replicates are necessary? J Comput Biol. 2010;17:337–54.
Article
CAS
PubMed
Google Scholar
Letunic I, Bork P. Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Res. 2016;
R Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.
Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res. 2012;40:e49.
Article
CAS
PubMed Central
PubMed
Google Scholar
Leinonen R, Sugawara H, Shumway M. The sequence read archive. Nucleic Acids Res. 2011;39:D19–21.
Article
CAS
PubMed
Google Scholar
Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009;25:1105–11.
Article
CAS
PubMed Central
PubMed
Google Scholar
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and cufflinks. Nat Protoc. 2012;7:562–78.
Article
CAS
PubMed Central
PubMed
Google Scholar
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ, Gapped BLAST. PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25:3389–402.
Article
CAS
PubMed Central
PubMed
Google Scholar
Assenov Y, Ramirez F, Schelhorn SE, Lengauer T, Albrecht M. Computing topological parameters of biological networks. Bioinformatics. 2008;24:282–4.
Article
CAS
PubMed
Google Scholar
Wu J, Shang Z, Wu J, Jiang X, Moschou P, Sun W, Roubelakis-Angelakis K, Zhang S. Spermidine oxidase-derived H2O2 regulates pollen plasma membrane hyperpolarization-activated Ca2+-permeable channels and pollen tube growth. The. Plant J. 2010;63:1042–53.
Article
CAS
PubMed
Google Scholar
Yoo SD, Cho YH, Sheen J. Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc. 2007;2:1565–72.
Article
CAS
PubMed
Google Scholar