Marshall Graves JA. The rise and fall of SRY. Trends Genet. 2002;18(5):259–64.
Article
PubMed
CAS
Google Scholar
Ottolenghi C, Pelosi E, Tran J, Colombino M, Douglass E, Nedorezov T, Cao A, Forabosco A, Schlessinger D. Loss of Wnt4 and Foxl2 leads to female-to-male sex reversal extending to germ cells. Hum Mol Genet. 2007;16(23):2795–804.
Article
PubMed
CAS
Google Scholar
Lavery R, Chassot AA, Pauper E, Gregoire EP, Klopfenstein M, de Rooij DG, Mark M, Schedl A, Ghyselinck NB, Chaboissier MC. Testicular Differentiation Occurs in Absence of R-spondin1 and Sox9 in Mouse Sex Reversals. Plos Genet. 2012;8(12):e1003170.
Smith CA, Roeszler KN, Ohnesorg T, Cummins DM, Farlie PG, Doran TJ, Sinclair AH. The avian Z-linked gene DMRT1 is required for male sex determination in the chicken. Nature. 2009;461(7261):267–71.
Article
PubMed
CAS
Google Scholar
Yoshimoto S, Okada E, Umemoto H, Tamura K, Uno Y, Nishida-Umehara C, Matsuda Y, Takamatsu N, Shiba T, Ito M. A W-linked DM-domain gene, DM-W, participates in primary ovary development in Xenopus laevis. P Natl Acad Sci USA. 2008;105(7):2469–74.
Article
Google Scholar
Mawaribuchi S, Takahashi S, Wada M, Uno Y, Matsuda Y, Kondo M, Fukui A, Takamatsu N, Taira M, Ito M. Sex chromosome differentiation and the W- and Z-specific loci in Xenopus laevis. Dev Biol. 2016;26(2):393–400.
Devlin RH, Nagahama Y. Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences. Aquaculture. 2002;208(3–4):191–364.
Article
CAS
Google Scholar
Barske LA, Capel B. Blurring the edges in vertebrate sex determination. Curr Opin Genet Dev. 2008;18(6):499–505.
Article
PubMed
CAS
Google Scholar
Pan Q, Anderson J, Bertho S, Herpin A, Wilson C, Postlethwait JH, Schartl M, Guiguen Y. Vertebrate sex-determining genes play musical chairs. C R Biol. 2016;339(7-8):258–62.
Matsuda M, Nagahama Y, Shinomiya A, Sato T, Matsuda C, Kobayashi T, Morrey CE, Shibata N, Asakawa S, Shimizu N, et al. DMY is a Y-specific DM-domain gene required for male development in the medaka fish. Nature. 2002;417(6888):559–63.
Article
PubMed
CAS
Google Scholar
Nanda I, Kondo M, Hornung U, Asakawa S, Winkler C, Shimizu A, Shan ZH, Haaf T, Shimizu N, Shima A, et al. A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes. P Natl Acad Sci USA. 2002;99(18):11778–83.
Article
CAS
Google Scholar
Myosho T, Otake H, Masuyama H, Matsuda M, Kuroki Y, Fujiyama A, Naruse K, Hamaguchi S, Sakaizumi M. Tracing the emergence of a novel sex-determining gene in Medaka, Oryzias luzonensis. Genetics. 2012;191(1):163.
Article
PubMed
PubMed Central
CAS
Google Scholar
Takehana Y, Matsuda M, Myosho T, Suster ML, Kawakami K, Shin-I T, Kohara Y, Kuroki Y, Toyoda A, Fujiyama A et al. Co-option of Sox3 as the male-determining factor on the Y chromosome in the fish Oryzias dancena. Nat Commun. 2014;5:4157.
Hattori RS, Murai Y, Oura M, Masuda S, Majhi SK, Sakamoto T, Fernandino JI, Somoza GM, Yokota M, Strussmann CA. A Y-linked anti-Mullerian hormone duplication takes over a critical role in sex determination. P Natl Acad Sci USA. 2012;109(8):2955–9.
Article
Google Scholar
Li MH, Sun YL, Zhao JE, Shi HJ, Zeng S, Ye K, Jiang DN, Zhou LY, Sun LN, Tao WJ, et al. A Tandem Duplicate of Anti-Mullerian Hormone with a Missense SNP on the Y Chromosome Is Essential for Male Sex Determination in Nile Tilapia, Oreochromis niloticus. Plos Genet. 2015;11(11):e1005678.
Kamiya T, Kai W, Tasumi S, Oka A, Matsunaga T, Mizuno N, Fujita M, Suetake H, Suzuki S, Hosoya S, et al. A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu). Plos Genet. 2012;8(7):e1002798.
Reichwald K, Petzold A, Koch P, Downie BR, Hartmann N, Pietsch S, Baumgart M, Chalopin D, Felder M, Bens M, et al. Insights into sex chromosome evolution and aging from the genome of a short-lived fish. Cell. 2015;163(6):1527–38.
Article
PubMed
CAS
Google Scholar
Yano A, Guyomard R, Nicol B, Jouanno E, Quillet E, Klopp C, Cabau C, Bouchez O, Fostier A, Guiguen Y. An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss. Curr Biol. 2012;22(15):1423–8.
Article
PubMed
CAS
Google Scholar
Yano A, Nicol B, Jouanno E, Quillet E, Fostier A, Guyomard R, Guiguen Y. The sexually dimorphic on the Y-chromosome gene (sdY) is a conserved male-specific Y-chromosome sequence in many salmonids. Evol Appl. 2013;6(3):486–96.
Article
PubMed
CAS
Google Scholar
Sun YL, Jiang DN, Zeng S, Hu CJ, Ye K, Yang C, Yang SJ, Li MH, Wang DS. Screening and characterization of sex-linked DNA markers and marker-assisted selection in the Nile tilapia (Oreochromis niloticus). Aquaculture. 2014;433:19–27.
Article
CAS
Google Scholar
Gammerdinger WJ, Conte MA, Acquah EA, Roberts RB, Kocher TD. Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus. Bmc Genomics. 2014;15:975.
Graham P, Penn JKM, Schedl P. Masters change, slaves remain. BioEssays. 2003;25(1):1–4.
Article
PubMed
CAS
Google Scholar
Hodgkin J. Sex determination compared in Drosophila and Caenorhabditis. Nature. 1990;344(6268):721–8.
Article
PubMed
CAS
Google Scholar
Marin I, Baker BS. The evolutionary dynamics of sex determination. Science. 1998;281(5385):1990–4.
Article
PubMed
CAS
Google Scholar
Capel B, Tanaka M. Forward to the special issue on sex determination. Dev Dynam. 2013;242(4):303–6.
Article
Google Scholar
Ross AJ, Capel B. Signaling at the crossroads of gonad development. Trends Endocrin Met. 2005;16(1):19–25.
Article
CAS
Google Scholar
Nakamura M. The mechanism of sex determination in vertebrates-are sex steroids the key-factor? J Exp Zool Part A. 2010;313A(7):381–98.
Article
CAS
Google Scholar
Paul-Prasanth B, Bhandari RK, Kobayashi T, Horiguchi R, Kobayashi Y, Nakamoto M, Shibata Y, Sakai F, Nakamura M, Nagahama Y. Estrogen oversees the maintenance of the female genetic program in terminally differentiated gonochorists. Sci Rep. 2013;3:2862.
Article
PubMed
PubMed Central
CAS
Google Scholar
Sun LN, Jiang XL, Xie QP, Yuan J, Huang BF, Tao WJ, Zhou LY, Nagahama Y, Wang DS. Transdifferentiation of differentiated ovary into functional testis by long-term treatment of aromatase inhibitor in Nile tilapia. Endocrinology. 2014;155(4):1476–88.
Article
PubMed
CAS
Google Scholar
Herpin A, Schartl M. Plasticity of gene-regulatory networks controlling sex determination: of masters, slaves, usual suspects, newcomers, and usurpators. EMBO Rep. 2015;16(10):1260–74.
Article
PubMed
PubMed Central
CAS
Google Scholar
Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. P Natl Acad Sci USA. 1998;95(25):14863–8.
Article
CAS
Google Scholar
Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. Bmc Bioinformatics. 2008;9:559.
Robledo D, Ribas L, Cal R, Sánchez L, Piferrer F, Martínez P, Viñas A. Gene expression analysis at the onset of sex differentiation in turbot (Scophthalmus maximus). BMC Genomics. 2015;16:973.
Article
PubMed
PubMed Central
CAS
Google Scholar
Zeng Q, Liu S, Yao J, Zhang Y, Yuan Z, Jiang C, Chen A, Fu Q, Su B, Dunham R, Liu Z. Transcriptome display during testicular differentiation of channel catfish (Ictalurus punctatus) as revealed by RNA-Seq analysis. Biol Reprod. 2016;95:19.
Article
PubMed
CAS
Google Scholar
Tao WJ, Yuan J, Zhou LY, Sun LN, Sun YL, Yang SJ, Li MH, Zeng S, Huang BF, Wang DS: Characterization of Gonadal Transcriptomes from Nile Tilapia (Oreochromis niloticus) Reveals Differentially Expressed Genes. Plos One 2013, 8(5).
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30(15):2114–20.
Article
PubMed
PubMed Central
CAS
Google Scholar
Conte MA, Gammerdinger WJ, Bartie KL, Penman DJ, Kocher TD. A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions. BMC Genomics. 2017;18(1):341.
Article
PubMed
PubMed Central
CAS
Google Scholar
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013;14(4):R36.
Trapnell C, Hendrickson DG, Sauvageau M, Goff L, Rinn JL, Pachter L. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat Biotechnol. 2013;31(1):46.
Article
PubMed
CAS
Google Scholar
Kobayashi T, Kajiura-Kobayashi H, Nagahama Y. Differential expression of vasa homologue gene in the germ cells during oogenesis and spermatogenesis in a teleost fish, tilapia, Oreochromis niloticus. Mech Develop. 2000;99(1–2):139–42.
Article
CAS
Google Scholar
Nakamura M, Kobayashi T, Chang XT, Nagahama Y. Gonadal sex differentiation in teleost fish. J Exp Zool. 1998;281(5):362–72.
Article
Google Scholar
Ijiri S, Kaneko H, Kobayashi T, Wang DS, Sakai F, Paul-Prasanth B, Nakamura M, Nagahama Y. Sexual dimorphic expression of genes in gonads during early differentiation of a teleost fish, the Nile tilapia Oreochromis niloticus. Biol Reprod. 2008;78(2):333–41.
Article
PubMed
CAS
Google Scholar
Ramskold D, Wang ET, Burge CB, Sandberg R. An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data. PLoS Comput Biol. 2009;5(12):e1000598.
Article
PubMed
PubMed Central
CAS
Google Scholar
Shin H, Shannon CP, Fishbane N, Ruan J, Zhou M, Balshaw R, Wilson-McManus JE, Ng RT, McManus BM, Tebbutt SJ. Variation in RNA-Seq transcriptome profiles of peripheral whole blood from healthy individuals with and without globin depletion. PLoS One. 2014;9(3):e91041.
Article
PubMed
PubMed Central
CAS
Google Scholar
D'haeseleer P, Liang SD, Somogyi R. Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics. 2000;16(8):707–26.
Article
PubMed
CAS
Google Scholar
Pevny LH, LovellBadge R. Sox genes find their feet. Curr Opin Genet Dev. 1997;7(3):338–44.
Article
PubMed
CAS
Google Scholar
Girard A, Sachidanandam R, Hannon GJ, Carmell MA. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature. 2006;442(7099):199–202.
PubMed
Google Scholar
Reading BJ, Williams VN, Chapman RW, Williams TI, Sullivan CV. Dynamics of the striped bass (Morone saxatilis) ovary proteome reveal a complex network of the translasome. J Proteome Res. 2013;12(4):1691–9.
Article
PubMed
CAS
Google Scholar
Yan W, Ma L, Burns KH, Matzuk MM. Haploinsufficiency of kelch-like protein homolog 10 causes infertility in male mice. P Natl Acad Sci USA. 2004;101(20):7793–8.
Article
CAS
Google Scholar
Yuan SQ, Stratton CJ, Bao JQ, Zheng HL, Bhetwal BP, Yanagimachi R, Yan W. Spata6 is required for normal assembly of the sperm connecting piece and tight head-tail conjunction. P Natl Acad Sci USA. 2015;112(5):E430–9.
Article
CAS
Google Scholar
Iwasaki YW, Siomi MC, Siomi H. PIWI-interacting RNA: its biogenesis and functions. Annu Rev Biochem. 2015;84:405–33.
Article
PubMed
CAS
Google Scholar
Tagami H, Ray-Gallet D, Almouzni G, Nakatani Y. Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell. 2004;116(1):51–61.
Article
PubMed
CAS
Google Scholar
Villeneuve L, Wang RL, Bencic DC, Biales AD, Martinovic D, Lazorchak JM, Toth G, Ankley GT. Altered gene expression in the brain and ovaries of zebrafish (Danio rerio) exposed to the aromatase inhibitor fadrozole: microarray analysis and hypothesis generation. Environ Toxicol Chem. 2009;28(8):1767–82.
Article
PubMed
CAS
Google Scholar
Shanthanagouda AH, Nugegoda D, Patil JG. Effects of bisphenol a and fadrozole exposures on cyp19a1 expression in the Murray rainbowfish, Melanotaenia fluviatilis. Arch Environ Contam Toxicol. 2014;67(2):270–80.
Article
PubMed
CAS
Google Scholar
Yamamoto Y, Hattori RS, Kitahara A, Kimura H, Yamashita M, Strussmann CA. Thermal and endocrine regulation of gonadal apoptosis during sex differentiation in pejerrey Odontesthes bonariensis. Sex Dev. 2013;7(6):316–24.
Article
PubMed
CAS
Google Scholar
Rodriguez-Mari A, Canestro C, BreMiller RA, Nguyen-Johnson A, Asakawa K, Kawakami K, Postlethwait JH. Sex Reversal in Zebrafish fancl Mutants Is Caused by Tp53-Mediated Germ Cell Apoptosis. Plos Genet. 2010;6(7):e1001034.
He Y, Shang X, Sun JH, Zhang L, Zhao W, Tian YH, Cheng HH, Zhou RJ. Gonadal apoptosis during sex reversal of the Rice field eel: implications for an evolutionarily conserved role of the molecular chaperone heat shock protein 10. J Exp Zool Part B. 2010;314b(4):257–66.
Article
CAS
Google Scholar
Zhang X, Li M, Ma H, Liu X, Shi H, Li M, Wang D. Mutation of foxl2 or cyp19a1a results in female to male sex reversal in XX Nile Tilapia. Endocrinology. 2017;158(8):2634–47.
PubMed
Google Scholar
Jiang DN, Yang HH, Li MH, Shi HJ, Zhang XB. Wang DS: gsdf is a downstream gene of dmrt1 that functions in the male sex determination pathway of the Nile tilapia. Mol Reprod Dev. 2016;
Ohtani H, Iwasaki YW, Shibuya A, Siomi H, Siomi MC, Saito K. DmGTSF1 is necessary for Piwi-piRISC-mediated transcriptional transposon silencing in the Drosophila ovary. Genes Dev. 2013;27(15):1656–61.
Article
PubMed
PubMed Central
CAS
Google Scholar
Wu XM, Viveiros MM, Eppig JJ, Bai YC, Fitzpatrick SL, Matzuk MM. Zygote arrest 1 (Zar1) is a novel maternal-effect gene critical for the oocyte-to-embryo transition. Nat Genet. 2003;33(2):187–91.
Article
PubMed
CAS
Google Scholar
Miao LY, Yuan Y, Cheng F, Fang JS, Zhou F, Ma WR, Jiang Y, Huang XH, Wang YC, Shan LJ, et al. Translation repression by maternal RNA binding protein Zar1 is essential for early oogenesis in zebrafish. Development. 2017;144(1):128–38.
Article
PubMed
CAS
Google Scholar
Radleff-Schlimme A, Leonhardt S, Wuttke W, Jarry K. Evidence for PACAP to be an autocrine factor on gonadotrope cells. Ann N Y Acad Sci. 1998;865:486–91.
Article
PubMed
CAS
Google Scholar
Winters SJ, Moore JP. PACAP, an autocrine/paracrine regulator of Gonadotrophs. Biol Reprod. 2011;84(5):844–50.
Article
PubMed
CAS
Google Scholar
Lin LL, Janz DM. Effects of binary mixtures of xenoestrogens on gonadal development and reproduction in zebrafish. Aquat Toxicol. 2006;80(4):382–95.
Article
PubMed
CAS
Google Scholar
He Y, Luo MJ, Yi MH, Sheng Y, Cheng YB, Zhou RJ, Cheng HH: Identification of a Testis-Enriched Heat Shock Protein and Fourteen Members of Hsp70 Family in the Swamp Eel. Plos One 2013, 8(6).
Mu W, Wen H, Li J, He F. Cloning and expression analysis of a HSP70 gene from Korean rockfish (Sebastes schlegeli). Fish Shellfish Immunol. 2013;35(4):1111–21.
Article
PubMed
CAS
Google Scholar
Sullivan CV, Chapman RW, Reading BJ, Anderson PE. Transcriptomics of mRNA and egg quality in farmed fish: some recent developments and future directions. Gen Comp Endocrinol. 2015;221:23–30.
Article
PubMed
CAS
Google Scholar
Harley VR. The molecular action of testis-determining factors SRY and SOX9. Novart Fdn Symp. 2002;244:57–67.
CAS
Google Scholar
Glinka A, Dolde C, Kirsch N, Huang YL, Kazanskaya O, Ingelfinger D, Boutros M, Cruciat CM, Niehrs C. LGR4 and LGR5 are R-spondin receptors mediating Wnt/beta-catenin and Wnt/PCP signalling. EMBO Rep. 2011;12(10):1055–61.
Article
PubMed
PubMed Central
CAS
Google Scholar
Carmon KS, Gong X, Lin QS, Thomas A, Liu QY. R-spondins function as ligands of the orphan receptors LGR4 and LGR5 to regulate Wnt/beta-catenin signaling. P Natl Acad Sci USA. 2011;108(28):11452–7.
Article
Google Scholar
Wickramasinghe D, Ebert KM, Albertini DF. Meiotic competence acquisition is associated with the appearance of M-phase characteristics in growing mouse oocytes. Dev Biol. 1991;143(1):162–72.
Article
PubMed
CAS
Google Scholar
Glait-Santar C, Benayahu D. Regulation of SVEP1 gene expression by 17beta-estradiol and TNFalpha in pre-osteoblastic and mammary adenocarcinoma cells. J Steroid Biochem Mol Biol. 2012;130(1–2):36–44.
Article
PubMed
CAS
Google Scholar
Mould AW, Duncan R, Serewko-Auret M, Loffler KA, Biondi C, Gartside M, Kay GF, Hayward NK. Global expression profiling of sex cord stromal tumors from Men1 heterozygous mice identifies altered TGF-beta signaling, decreased Gata6 and increased Csf1r expression. Int J Cancer. 2009;124(5):1122–32.
Article
PubMed
CAS
Google Scholar
Roeszler KN, Itman C, Sinclair AH, Smith CA. The long non-coding RNA, MHM, plays a role in chicken embryonic development, including gonadogenesis. Dev Biol. 2012;366(2):317–26.
Article
PubMed
CAS
Google Scholar
Capel B. Vertebrate sex determination: evolutionary plasticity of a fundamental switch. Nat Rev Genet. 2017;