Dransfield E, Sosnicki AA. Relationship between muscle growth and poultry meat quality. Poult Sci. 1999;78(5):743–6.
Article
CAS
PubMed
Google Scholar
Du M, Huang Y, Das AK, Yang Q, Duarte MS, Dodson MV, Zhu MJ. Meat science and muscle biology symposium: manipulating mesenchymal progenitor cell differentiation to optimize performance and carcass value of beef cattle. J Anim Sci. 2013;91(3):1419–27.
Article
CAS
PubMed
Google Scholar
Hindi SM, Tajrishi MM, Kumar A. Signaling Mechanisms in Mammalian Myoblast Fusion. Science Signaling. 2013,6(272):re2-re2.
Tůmová E, Teimouri A. Fat deposition in the broiler chicken: a review. Sci Agric Bohem. 2010;41(2):121–8.
Google Scholar
Du M, Yin J, Zhu MJ. Cellular signaling pathways regulating the initial stage of adipogenesis and marbling of skeletal muscle. Meat Sci. 2010;86(1):103–9.
Article
CAS
PubMed
Google Scholar
Hwang B, Lee JH, Bang D. Single-cell RNA sequencing technologies and bioinformatics pipelines. Experimental Molecular Med. 2018;50(8):1–14.
Article
CAS
Google Scholar
Wagner A, Regev A, Yosef N. Revealing the vectors of cellular identity with single-cell genomics. Nat Biotechnol. 2016;34(11):1145–60.
Article
CAS
PubMed
PubMed Central
Google Scholar
Han X, Wang R, Zhou Y, Fei L, Sun H, Lai S, Saadatpour A, Zhou Z, Chen H, Ye F, et al. Mapping the mouse cell atlas by microwell-seq. Cell. 2018;172(5):1307.
Article
Google Scholar
Merrick D, Sakers A, Irgebay Z, Okada C, Calvert C, Morley MP, Percec I, Seale P. Identification of a mesenchymal progenitor cell hierarchy in adipose tissue. Science. 2019;364(6438):eaav2501.
Häring M, Zeisel A, Hochgerner H, Rinwa P, Jakobsson JET, Lönnerberg P, Manno GL, Sharma N, Borgius L, Kiehn O, et al. Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types. Nat Neurosci. 2018;21(6):869–80.
Article
PubMed
Google Scholar
Cembrowski MS, Phillips MG, DiLisio SF, Shields BC, Winnubst J, Chandrashekar J, Bas E, Spruston N. Dissociable Structural and Functional Hippocampal Outputs via Distinct Subiculum Cell Classes. Cell. 2018;173(5):1280–92.e1218.
Sathyamurthy A, Johnson KR, Matson KJE, Dobrott CI, Li L, Ryba AR, Bergman TB, Kelly MC, Kelley MW, Levine AJ. Massively parallel single nucleus transcriptional profiling defines spinal cord neurons and their activity during behavior. Cell Rep. 2018;22(8):2216–25.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zimmerman AW, Veerkamp JH. New insights into the structure and function of fatty acid-binding proteins. Cell Mol Life Sci. 2002;59(7):1096–116.
Article
CAS
PubMed
Google Scholar
Cui H-X, Liu R-R, Zhao G-P, Zheng M-Q, Chen J-L, Wen J. Identification of differentially expressed genes and pathways for intramuscular fat deposition in pectoralis major tissues of fast-and slow-growing chickens. BMC Genomics. 2012;13(1):213.
Article
CAS
PubMed
PubMed Central
Google Scholar
Xu T, Gu L, Schachtschneider KM, Liu X, Huang W, Xie M, et al. Identification of Differentially Expressed Genes in Breast Muscle and Skin Fat of Postnatal Pekin Duck. PLoS ONE. 2014;9(9):e107574.
Li B, Qiao L, An L, Wang W, Liu J, Ren Y, Pan Y, Jing J, Liu W. Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition. BMC genomics. 2018;19(1):1–13.
Article
CAS
Google Scholar
Christodoulides C, Lagathu C, Sethi JK, Vidal-Puig A. Adipogenesis and WNT signalling. Trends Endocrinol Metab. 2009;20(1):16–24.
Article
CAS
PubMed
Google Scholar
Birk R, Sommer U, Faber A, Aderhold C, Schulz JD, Hörmann K, Goessler UR, Stern-Straeter J. Evaluation of the effect of static magnetic fields combined with human hepatocyte growth factor on human satellite cell cultures. Mol Med Rep. 2014;9(6):2328–34.
Article
CAS
PubMed
Google Scholar
Krenkel O, Hundertmark J, Ritz TP, Weiskirchen R, Tacke, F. Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis. Cells. 2019;8:503.
Wilson NK, Kent DG, Buettner F, Shehata M, Macaulay IC, Calero-Nieto FJ, Castillo MS, Oedekoven CA, Diamanti E, Schulte R, et al. Combined single-cell functional and gene expression analysis resolves heterogeneity within stem cell populations. Cell Stem Cell. 2015;16(6):712–24.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li H, Courtois ET, Sengupta D, Tan Y, Chen KH, Goh JJL, Kong SL, Chua C, Hon LK, Tan WS, et al. Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors. Nat Genet. 2017;49(5):708–18.
Article
CAS
PubMed
Google Scholar
Jimenez-Pascual A, Siebzehnrubl FA. Fibroblast Growth Factor Receptor Functions in Glioblastoma. Cells. 2019;8:715.
Braun T, Gautel M. Transcriptional mechanisms regulating skeletal muscle differentiation, growth and homeostasis. Nat Rev Mol Cell Biol. 2011;12(6):349–61.
Article
CAS
PubMed
Google Scholar
Darabi R, Gehlbach K, Bachoo RM, Kamath S, Osawa M, Kamm KE, Kyba M, Perlingeiro RCR. Functional skeletal muscle regeneration from differentiating embryonic stem cells. Nat Med. 2008;14(2):134–43.
Article
CAS
PubMed
Google Scholar
Liu R, Wang H, Liu J, Wang J, Zheng M, Tan X, Xing S, Cui H, Li Q, Zhao G, et al. Uncovering the embryonic development-related proteome and metabolome signatures in breast muscle and intramuscular fat of fast-and slow-growing chickens. BMC Genomics. 2017;18(1):816.
Article
PubMed
PubMed Central
Google Scholar
Giordani L, He GJ, Negroni E, Sakai H, Law JYC, Siu MM, Wan R, Corneau A, Tajbakhsh S, Cheung TH et al. High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations. Molecular Cell. 2019;74(3):609-21.e606.
De Micheli AJ, Laurilliard EJ, Heinke CL, Ravichandran H, Fraczek P, Soueid-Baumgarten S, De Vlaminck I, Elemento O, Cosgrove BD. Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration. Cell Reports. 2020;30(10):3583-95.e3585.
Lee S-H, Park E-W, Cho Y-M, Kim S-K, Lee J-H, Jeon J-T, Lee C-S, Im S-K, Oh S-J, Thompson JM, et al. Identification of differentially expressed genes related to intramuscular fat development in the early and late fattening stages of hanwoo steers. J Biochem Mol Biol. 2007;40(5):757–64.
CAS
PubMed
Google Scholar
Cui H, Zheng M, Zhao G, Liu R, Wen J. Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens. BMC Genomics. 2018l;19(1):55.
Jiang M, Fan WL, Xing SY, Wang J, Li P, Liu RR, Li QH, Zheng MQ, Cui HX, Wen J, et al. Effects of balanced selection for intramuscular fat and abdominal fat percentage and estimates of genetic parameters. Poult Sci. 2017;96(2):282–7.
Article
CAS
PubMed
Google Scholar
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013;29(1):15–21.
Article
CAS
PubMed
Google Scholar
Jaitin DA, Kenigsberg E, Keren-Shaul H, Elefant N, Paul F, Zaretsky I, Mildner A, Cohen N, Jung S, Tanay A, et al. Massively parallel single-cell rna-seq for marker-free decomposition of tissues into cell types. Science. 2014;343(6172):776–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Klein AM, Mazutis L, Akartuna I, Tallapragada N, Veres A, Li V, Peshkin L, Weitz DA, Kirschner MW. Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. Cell. 2015;161(5):1187–201.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gribov A, Sill M, Lück S, Rücker F, Döhner K, Bullinger L, Benner A, Unwin A. SEURAT: visual analytics for the integrated analysis of microarray data. BMC Med Genet. 2010;3(1):21.
Google Scholar
Guo X, Zhang Y, Zheng L, Zheng C, Song J, Zhang Q, Kang B, Liu Z, Jin L, Xing R, et al. Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing. Nat Med. 2018;24(7):978–85.
Article
CAS
PubMed
Google Scholar
Xie C, Mao X, Huang J, Ding Y, Wu J, Dong S, Kong L, Gao G, Li C-Y, Wei L. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Research. 2011;39:316–22.
Article
Google Scholar
Manno GL, Soldatov R, Zeisel A, Braun E, Hochgerner H, Petukhov V, Lidschreiber K, Kastriti ME, Lönnerberg P, Furlan A, et al. RNA velocity of single cells. Nature. 2018;560(7719):494–8.
Article
PubMed
PubMed Central
Google Scholar
Wang Y, Song F, Zhu J, Zhang S, Yang Y, Chen T, Tang B, Dong L, Ding N, Zhang Q, et al. GSA: genome sequence archive. Genomics Proteomics Bioinformatics. 2017;15(1):14–8.
Article
PubMed
PubMed Central
Google Scholar
Xu X, Hao L, Zhu J, Zhou Q, Song F, Chen T, Zhang S, Dong L, Lan L, Wang Y, et al. Big Data Center Members: Database Resources of the BIG Data Center in 2018. Nucleic Acids Res. 2018;46(D1):D14-20.