Hemmrich G, Miller DJ, Bosch TCG. The evolution of immunity: a low-life perspective. Trends Immunol. 2007;28:449–54.
Article
CAS
PubMed
Google Scholar
Brennan JJ, Gilmore TD. Evolutionary origins of toll-like receptor signaling. Mol Biol Evol. 2018;35:1576–87.
Article
CAS
PubMed
Google Scholar
Mansfield KM, Gilmore TD. Innate immunity and cnidarian-Symbiodiniaceae mutualism. Dev Comp Immunol. 2019;90:199–209.
Article
CAS
PubMed
Google Scholar
Miller DJ, Hemmrich G, Ball EE, Hayward DC, Khalturin K, Funayama N, et al. The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss. Genome Biol. 2007;8:R59.
Article
PubMed
PubMed Central
CAS
Google Scholar
Shinzato C, Shoguchi E, Kawashima T, Hamada M, Hisata K, Tanaka M, et al. Using the Acropora digitifera genome to understand coral responses to environmental change. Nature. 2011;476:320–3.
Article
CAS
PubMed
Google Scholar
Hamada M, Shoguchi E, Shinzato C, Kawashima T, Miller DJ, Satoh N. The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations. Mol Biol Evol. 2013;30:167–76.
Article
CAS
PubMed
Google Scholar
Lange C, Hemmrich G, Klostermeier UC, Lopez-Quintero JA, Miller DJ, Rahn T, et al. Defining the origins of the NOD-like receptor system at the base of animal evolution. Mol Biol Evol. 2011;28:1687–702.
Article
CAS
PubMed
Google Scholar
Grajales A, Rodríguez E. Morphological revision of the genus Aiptasia and the family Aiptasiidae (Cnidaria, Actiniaria, Metridioidea). Zootaxa. 2014;3826:55.
Article
PubMed
Google Scholar
Sunagawa S, Wilson EC, Thaler M, Smith ML, Caruso C, Pringle JR, et al. Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont. BMC Genomics. 2009;10:258.
Article
PubMed
PubMed Central
CAS
Google Scholar
Baumgarten S, Simakov O, Esherick LY, Liew YJ, Lehnert EM, Michell CT, et al. The genome of Aiptasia, a sea anemone model for coral symbiosis. Proc Natl Acad Sci U S A. 2015;112:11893–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Poole AZ, Kitchen SA, Weis VM. The role of complement in cnidarian-Dinoflagellate Symbiosis and immune challenge in the sea Anemone Aiptasia pallida. Front Microbiol. 2016;7:519.
Article
PubMed
PubMed Central
Google Scholar
Detournay O, Schnitzler CE, Poole A, Weis VM. Regulation of cnidarian–dinoflagellate mutualisms: evidence that activation of a host TGFβ innate immune pathway promotes tolerance of the symbiont. Dev Comp Immunol. 2012;38:525–37.
Article
CAS
PubMed
Google Scholar
Franzenburg S, Fraune S, Kunzel S, Baines JF, Domazet-Loso T, Bosch TCG. MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers. Proc Natl Acad Sci. 2012;109:19374–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bosch TCG. Cnidarian-microbe interactions and the origin of innate immunity in metazoans. Annu Rev Microbiol. 2013;67:499–518.
Article
CAS
PubMed
Google Scholar
Dishaw LJ, Litman GW. Invertebrate Allorecognition: the origins of histocompatibility. Curr Biol. 2009;19:R286–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Puill-Stephan E, Willis BL, Abrego D, Raina J-B, van Oppen MJH. Allorecognition maturation in the broadcast-spawning coral Acropora millepora. Coral Reefs. 2012;31:1019–28.
Article
Google Scholar
Davy SK, Allemand D, Weis VM. Cell biology of cnidarian-Dinoflagellate Symbiosis. Microbiol Mol Biol Rev. 2012;76:229–61.
Article
CAS
PubMed
PubMed Central
Google Scholar
Weis VM. Cell biology of coral Symbiosis: foundational study can inform solutions to the coral reef crisis. Integr Comp Biol. 2019;59:845–55.
Article
CAS
PubMed
Google Scholar
van de Water JAJM, Ainsworth TD, Leggat W, Bourne DG, Willis BL, van Oppen MJH. The coral immune response facilitates protection against microbes during tissue regeneration. Mol Ecol. 2015;24:3390–404.
Article
PubMed
Google Scholar
Mydlarz LD, Jones LE, Harvell CD. Innate immunity, environmental drivers, and disease ecology of marine and freshwater invertebrates. Annu Rev Ecol Evol Syst. 2006;37:251–88.
Article
Google Scholar
Mydlarz LD, Fuess L, Mann W, Pinzón JH, Gochfeld DJ. Cnidarian immunity: from genomes to phenomes. The Cnidaria, Past, Present and Future. Cham: Springer; 2016. p. 441–66.
Palmer CV, Traylor-Knowles N. Towards an integrated network of coral immune mechanisms. Proc R Soc B Biol Sci. 2012;279:4106–14.
Article
CAS
Google Scholar
van de Water JAJM, Chaib De Mares M, Dixon GB, Raina J-B, Willis BL, Bourne DG, et al. Antimicrobial and stress responses to increased temperature and bacterial pathogen challenge in the holobiont of a reef-building coral. Mol Ecol. 2018;27:1065–80.
Article
PubMed
CAS
Google Scholar
Zaragoza WJ, Krediet CJ, Meyer JL, Canas G, Ritchie KB, Teplitski M. Outcomes of infections of sea Anemone Aiptasia pallida with Vibrio spp. Pathogenic to Corals. Microb Ecol. 2014;68:388–96.
Article
CAS
PubMed
Google Scholar
Alagely A, Krediet CJ, Ritchie KB, Teplitski M. Signaling-mediated cross-talk modulates swarming and biofilm formation in a coral pathogen Serratia marcescens. ISME J. 2011;5:1609–20.
Article
CAS
PubMed
PubMed Central
Google Scholar
Krediet CJ, Meyer JL, Gimbrone N, Yanong R, Berzins I, Alagely A, et al. Interactions between the tropical sea anemone Aiptasia pallida and Serratia marcescens, an opportunistic pathogen of corals. Environ Microbiol Rep. 2014;6:287–92.
Article
PubMed
Google Scholar
Roesel CL, Vollmer SV. Differential gene expression analysis of symbiotic and aposymbiotic Exaiptasia anemones under immune challenge with Vibrio coralliilyticus. Ecol Evol. 2019;9:8279–93.
Article
PubMed
PubMed Central
Google Scholar
Fuess LE, Pinzón CJH, Weil E, Grinshpon RD, Mydlarz LD. Life or death: disease-tolerant coral species activate autophagy following immune challenge. Proc R Soc B. 2017;284:20170771.
Article
PubMed
CAS
PubMed Central
Google Scholar
Williams LM, Fuess LE, Brennan JJ, Mansfield KM, Salas-Rodriguez E, Welsh J, et al. A conserved toll-like receptor-to-NF-κB signaling pathway in the endangered coral Orbicella faveolata. Dev Comp Immunol. 2018;79:128–36.
Kvennefors ECE, Leggat W, Kerr CC, Ainsworth TD, Hoegh-Guldberg O, Barnes AC. Analysis of evolutionarily conserved innate immune components in coral links immunity and symbiosis. Dev Comp Immunol. 2010;34:1219–29.
Article
CAS
PubMed
Google Scholar
Perez S, Weis VM. Nitric oxide and cnidarian bleaching: an eviction notice mediates breakdown of a symbiosis. J Exp Biol. 2006;209:2804–10.
Article
CAS
PubMed
Google Scholar
Neubauer EF, Poole AZ, Weis VM, Davy SK. The scavenger receptor repertoire in six cnidarian species and its putative role in cnidarian-dinoflagellate symbiosis. PeerJ. 2016;4:e2692.
Article
PubMed
PubMed Central
CAS
Google Scholar
Brennan JJ, Messerschmidt JL, Williams LM, Matthews BJ, Reynoso M, Gilmore TD. Sea anemone model has a single toll-like receptor that can function in pathogen detection, NF-κB signal transduction, and development. Proc Natl Acad Sci U S A. 2017;114:E10122–31.
Article
CAS
PubMed
PubMed Central
Google Scholar
Palmer CV, McGinty ES, Cummings DJ, Smith SM, Bartels E, Mydlarz LD. Patterns of coral ecological immunology: variation in the responses of Caribbean corals to elevated temperature and a pathogen elicitor. J Exp Biol. 2011;214:4240–9.
Article
CAS
PubMed
Google Scholar
Connelly MT, McRae CJ, Liu P-J, Traylor-Knowles N. Lipopolysaccharide treatment stimulates Pocillopora coral genotype-specific immune responses but does not alter coral-associated bacteria communities. Dev Comp Immunol. 2020;109:103717.
Article
CAS
PubMed
Google Scholar
Bosch TCG, Augustin R, Anton-Erxleben F, Fraune S, Hemmrich G, Zill H, et al. Uncovering the evolutionary history of innate immunity: the simple metazoan Hydra uses epithelial cells for host defence. Dev Comp Immunol. 2009;33:559–69.
Article
CAS
PubMed
Google Scholar
Livny J, Zhou X, Mandlik A, Hubbard T, Davis BM, Waldor MK. Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection. Nucleic Acids Res. 2014;42:12212–23.
Article
CAS
PubMed
PubMed Central
Google Scholar
Czachor JS. Unusual aspects of bacterial water-borne illnesses. Am Fam Physician. 1992;46:797–804.
CAS
PubMed
Google Scholar
Lipp EK, Rose JB. The role of seafood in foodborne diseases in the United States of America. Rev Sci Tech Office Int des Epizooties. 1997;16:620–40.
Article
CAS
Google Scholar
Chimetto LA, Brocchi M, Thompson CC, Martins RCR, Ramos HR, Thompson FL. Vibrios dominate as culturable nitrogen-fixing bacteria of the Brazilian coral Mussismilia hispida. Syst Appl Microbiol. 2008;31:312–9.
Article
CAS
PubMed
Google Scholar
Nithyanand P, Pandian SK. Phylogenetic characterization of culturable bacterial diversity associated with the mucus and tissue of the coral Acropora digitifera from the Gulf of Mannar: Culturable bacterial diversity of A. digitifera. FEMS Microbiol Ecol. 2009;69:384–94.
Article
CAS
PubMed
Google Scholar
Zhang Q-L, Zhu Q-H, Liang M-Z, Wang F, Guo J, Deng X-Y, et al. Comparative transcriptomic analysis provides insights into antibacterial mechanisms of Branchiostoma belcheri under Vibrio parahaemolyticus infection. Fish Shellfish Immunol. 2018;76:196–205.
Article
CAS
PubMed
Google Scholar
Augustin R, Fraune S, Bosch TCG. How Hydra senses and destroys microbes. Semin Immunol. 2010;22:54–8.
Article
CAS
PubMed
Google Scholar
Brown T, Rodriguez-Lanetty M. Defending against pathogens – immunological priming and its molecular basis in a sea anemone, cnidarian. Sci Rep. 2015;5:17425.
Article
CAS
PubMed
PubMed Central
Google Scholar
Duncan JA, Canna SW. The NLRC4 Inflammasome. Immunol Rev. 2018;281:115–23.
Article
CAS
PubMed
PubMed Central
Google Scholar
van der Burg CA, Prentis PJ, Surm JM, Pavasovic A. Insights into the innate immunome of actiniarians using a comparative genomic approach. BMC Genomics. 2016;17:850.
Article
PubMed
PubMed Central
CAS
Google Scholar
Ceccarelli D, Hasan NA, Huq A, Colwell RR. Distribution and dynamics of epidemic and pandemic Vibrio parahaemolyticus virulence factors. Front Cell Infect Microbiol. 2013;3:97.
Article
PubMed
PubMed Central
CAS
Google Scholar
Watanabe Y, Tateno H, Nakamura-Tsuruta S, Kominami J, Hirabayashi J, Nakamura O, et al. The function of rhamnose-binding lectin in innate immunity by restricted binding to Gb3. Dev Comp Immunol. 2009;33:187–97.
Article
CAS
PubMed
Google Scholar
Kvennefors ECE, Leggat W, Hoegh-Guldberg O, Degnan BM, Barnes AC. An ancient and variable mannose-binding lectin from the coral Acropora millepora binds both pathogens and symbionts. Dev Comp Immunol. 2008;32:1582–92.
Article
CAS
PubMed
Google Scholar
Poole AZ, Weis VM. TIR-domain-containing protein repertoire of nine anthozoan species reveals coral–specific expansions and uncharacterized proteins. Dev Comp Immunol. 2014;46:480–8.
Article
CAS
PubMed
Google Scholar
Quistad SD, Traylor-Knowles N. Precambrian origins of the TNFR superfamily. Cell Death Discov. 2016;2:1–6.
Article
CAS
Google Scholar
Quistad SD, Stotland A, Barott KL, Smurthwaite CA, Hilton BJ, Grasis JA, et al. Evolution of TNF-induced apoptosis reveals 550 my of functional conservation. Proc Natl Acad Sci U S A. 2014;111:9567–72.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bergsbaken T, Fink SL, Cookson BT. Pyroptosis: host cell death and inflammation. Nat Rev Microbiol. 2009;7:99–109.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lamkanfi M, Dixit VM. Manipulation of host cell death pathways during microbial infections. Cell Host Microbe. 2010;8:44–54.
Article
CAS
PubMed
Google Scholar
Zitvogel L, Kepp O, Kroemer G. Decoding cell death signals in inflammation and immunity. Cell. 2010;140:798–804.
Article
CAS
PubMed
Google Scholar
Elliott MR, Ravichandran KS. Clearance of apoptotic cells: implications in health and disease. J Cell Biol. 2010;189:1059–70.
Article
CAS
PubMed
PubMed Central
Google Scholar
Fuess LE, Pinzόn C, JH WE, Mydlarz LD. Associations between transcriptional changes and protein phenotypes provide insights into immune regulation in corals. Dev Comp Immunol. 2016;62:17–28.
Article
CAS
PubMed
Google Scholar
Mashaghi A, Marmalidou A, Tehrani M, Grace PM, Pothoulakis C, Dana R. Neuropeptide substance P and the immune response. Cell Mol Life Sci. 2016;73:4249–64.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang D. The essential role of G protein-coupled receptor (GPCR) signaling in regulating T cell immunity. Immunopharmacol Immunotoxicol. 2018;40:187–92.
Article
CAS
PubMed
Google Scholar
Lu E, Cyster JG. G-protein coupled receptors and ligands that organize humoral immune responses. Immunol Rev. 2019;289:158–72.
Article
CAS
PubMed
PubMed Central
Google Scholar
Vidal-Dupiol J, Ladriere O, Meistertzheim A-L, Foure L, Adjeroud M, Mitta G. Physiological responses of the scleractinian coral Pocillopora damicornis to bacterial stress from Vibrio coralliilyticus. J Exp Biol. 2011a;214:1533–45.
Article
CAS
PubMed
Google Scholar
Vidal-Dupiol J, Ladrière O, Destoumieux-Garzón D, Sautière P-E, Meistertzheim A-L, Tambutté E, et al. Innate immune responses of a Scleractinian coral to Vibriosis. J Biol Chem. 2011b;286:22688–98.
Article
CAS
PubMed
PubMed Central
Google Scholar
Vidal-Dupiol J, Dheilly NM, Rondon R, Grunau C, Cosseau C, Smith KM, et al. Thermal stress triggers broad Pocillopora damicornis Transcriptomic remodeling, while Vibrio coralliilyticus infection induces a more targeted Immuno-suppression response. PLoS One. 2014;9:e107672.
Article
PubMed
PubMed Central
CAS
Google Scholar
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114–20.
Article
CAS
PubMed
PubMed Central
Google Scholar
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011;29:644–52.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li B, and Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC bioinformatics. 2011;12:323.
Langmead B, Salzberg SL. Fast gapped-read alignment with bowtie 2. Nat Methods. 2012;9:357.
Article
CAS
PubMed
PubMed Central
Google Scholar
Robinson MD, McCarthy DJ, Smyth GK. edgeR: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26:139–40.
Article
CAS
PubMed
Google Scholar
Conesa A, Nueda MJ, Ferrer A, Talon M. maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments. Bioinformatics. 2006;22:1096–102.
Article
CAS
PubMed
Google Scholar
Gotz S, Garcia-Gomez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, et al. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 2008;36:3420–35.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hu Z-L, Bao J, Reecy JM. CateGOrizer: a web-based program to batch analyze gene ontology classification categories. Online J Bioinformatics. 2008;9:108–12.