Eyun SI, Soh HY, Posavi M, Munro JB, Hughes DST, Murali SC, et al. Evolutionary history of chemosensory-related gene families across the Arthropoda. Mol Biol Evol. 2017;34:1838–62.
Article
CAS
PubMed
PubMed Central
Google Scholar
Pearce SL, Clarke DF, East PD, Elfekih S, Gordon KHJ, Jermiin LS, et al. Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. BMC Biol. 2017;15:63.
Article
CAS
PubMed
PubMed Central
Google Scholar
Cheng T, Wu J, Wu Y, Chilukuri RV, Huang L, Yamamoto K, et al. Genomic adaptation to polyphagy and insecticides in a major East Asian noctuid pest. Nat Ecol Evol. 2017;1:1747–56.
Article
PubMed
Google Scholar
Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, et al. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Sci Rep. 2018;8:1931.
Article
PubMed
PubMed Central
CAS
Google Scholar
McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, et al. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biol. 2016;17:227.
Article
PubMed
PubMed Central
CAS
Google Scholar
McKenna DD, Shin S, Ahrens D, Balke M, Beza-Beza C, Clarke DJ, et al. The evolution and genomic basis of beetle diversity. P Natl Acad Sci U S A. 2019;116:24729–37.
Article
CAS
Google Scholar
Hazzouri KM, Sudalaimuthuasari N, Kundu B, Nelson D, Al-Deeb MA, Le Mansour A, et al. The genome of pest Rhynchophorus ferrugineus reveals gene families important at the plant-beetle interface. Commun Biol. 2020;3:323.
Article
PubMed
PubMed Central
Google Scholar
Seppey M, Ioannidis P, Emerson BC, Pitteloud C, Robinson-Rechavi M, Roux J, et al. Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles. Genome Biol. 2019;20:98.
Article
PubMed
PubMed Central
Google Scholar
Vogel H, Muller A, Heckel DG, Gutzeit H, Vilcinskas A. Nutritional immunology: diversification and diet-dependent expression of antimicrobial peptides in the black soldier fly Hermetia illucens. Dev Comp Immunol. 2018;78:141–8.
Article
CAS
PubMed
Google Scholar
Vilcinskas A. Evolutionary plasticity of insect immunity. J Insect Physiol. 2013;59:123–9.
Article
CAS
PubMed
Google Scholar
Login FH, Balmand S, Vallier A, Vincent-Monegat C, Vigneron A, Weiss-Gayet M, et al. Antimicrobial peptides keep insect endosymbionts under control. Science. 2011;334:362–5.
Article
CAS
PubMed
Google Scholar
Vogel H, Schmidtberg H, Vilcinskas A. Comparative transcriptomics in three ladybird species supports a role for immunity in invasion biology. Dev Comp Immunol. 2017;67:452–6.
Article
CAS
PubMed
Google Scholar
Pang H, Tang XF, Booth RG, Vandenberg N, Forrester J, Mchugh J, et al. Revision of the Australian Coccinellidae (Coleoptera). Genus Novius Mulsant of tribe Noviini. Ann Zool. 2020;70:1–24.
Article
Google Scholar
Caltagirone LE, Doutt RL. The history of the vedalia beetle importation to California and its impact on the development of biological control. Annu Rev Entomol. 1989;34:1–16.
Article
Google Scholar
De Clercq P, Mason PG, Babendreier D. Benefits and risks of exotic biological control agents. BioControl. 2011;56:681–98.
Article
Google Scholar
Kairo MKT, Paraiso O, Gautam RD, Peterkin DD. Cryptolaemus montrouzieri (Mulsant) (Coccinellidae: Scymninae): a review of biology, ecology, and use in biological control with particular reference to potential impact on non-target organisms. CAB Reviews. 2013;8:1–20.
Article
Google Scholar
Maes S, Antoons T, Gregoire JC, De Clercq P. a semi-artificial rearing system for the specialist predatory ladybird Cryptolaemus montrouzieri. BioControl. 2014;59:557–64.
Article
Google Scholar
Xie J, Wu H, Pang H, De Clercq P. An artificial diet containing plant pollen for the mealybug predator Cryptolaemus montrouzieri. Pest Manag Sci 2016; 73:541–545.
Maes S, Grégoire J-C, De Clercq P. Prey range of the predatory ladybird Cryptolaemus montrouzieri. BioControl. 2014;59:729–38.
Article
Google Scholar
Surwase S, Shetgar S, Khandare R, Magar S, Nalwandikar P. Biology of Cryptolaemus montrouzieri Mulsant on mealy bugs and aphids. J Entomol Res. 2016;40:95–100.
Article
Google Scholar
Li H-S, Pan C, De Clercq P, Ślipiński A, Pang H. Variation in life history traits and transcriptome associated with adaptation to diet shifts in the ladybird Cryptolaemus montrouzieri. BMC Genomics. 2016;17:281.
Article
PubMed
PubMed Central
CAS
Google Scholar
Zhang L, Li S, Luo J, Du P, Wu L, Li Y, et al. Chromosome-level genome assembly of the predator Propylea japonica to understand its tolerance to insecticides and high temperatures. Mol Ecol Resour. 2019.
Waterhouse RM, Seppey M, Simao FA, Manni M, Ioannidis P, Klioutchnikov G, et al. BUSCO applications from quality assessments to gene prediction and phylogenomics. Mol Biol Evol. 2018;35:543–8.
Article
CAS
PubMed
Google Scholar
Hoff KJ, Lange S, Lomsadze A, Borodovsky M, Stanke M. BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS. Bioinformatics. 2016;32:767–9.
Article
CAS
PubMed
Google Scholar
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, et al. Gene content evolution in the arthropods. Genome Biol. 2020;21:15.
Article
PubMed
PubMed Central
Google Scholar
Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, et al. Firefly genomes illuminate parallel origins of bioluminescence in beetles. eLife. 2018;7:e36495.
Article
PubMed
PubMed Central
Google Scholar
Cunningham CB, Ji L, Wiberg RA, Shelton J, McKinney EC, Parker DJ, et al. The genome and methylome of a beetle with complex social behavior, Nicrophorus vespilloides (Coleoptera: Silphidae). Genome Biol Evol. 2015;7:3383–96.
Article
PubMed
PubMed Central
Google Scholar
Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, et al. The genome of the model beetle and pest Tribolium castaneum. Nature. 2008;452:949–55.
Article
CAS
PubMed
Google Scholar
Keeling CI, Yuen MM, Liao NY, Docking TR, Chan SK, Taylor GA, et al. Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest. Genome Biol. 2013;14:R27.
Article
PubMed
PubMed Central
CAS
Google Scholar
Han MV, Thomas GW, Lugo-Martinez J, Hahn MW. Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3. Mol Biol Evol. 2013;30:1987–97.
Article
CAS
PubMed
Google Scholar
Farrell BD. "Inordinate fondness" explained: why are there so many beetles? Science. 1998;281:555–9.
Article
CAS
PubMed
Google Scholar
Zhang SQ, Che LH, Li Y, Dan L, Pang H, Slipinski A, et al. Evolutionary history of Coleoptera revealed by extensive sampling of genes and species. Nat Commun. 2018;9:205.
Article
PubMed
PubMed Central
CAS
Google Scholar
Giorgi JA, Vandenberg NJ, McHugh JV, Forrester JA, Ślipiński SA, Miller KB, et al. The evolution of food preferences in Coccinellidae. Biol Control. 2009;51:215–31.
Article
Google Scholar
Seago AE, Giorgi JA, Li J, Slipinski A. Phylogeny, classification and evolution of ladybird beetles (Coleoptera: Coccinellidae) based on simultaneous analysis of molecular and morphological data. Mol Phylogenet Evol. 2011;60:137–51.
Article
PubMed
Google Scholar
Magro A, Lecompte E, Magne F, Hemptinne JL, Crouau-Roy B. Phylogeny of ladybirds (Coleoptera: Coccinellidae): are the subfamilies monophyletic? Mol Phylogenet Evol. 2010;54:833–48.
Article
CAS
PubMed
Google Scholar
Grenier S. In vitro rearing of entomophagous insects- past and future trends: a minireview. B Insectol. 2009;62:1–6.
Google Scholar
Coudron TA, Yocum GD, Brandt SL. Nutrigenomics: a case study in the measurement of insect response to nutritional quality. Entomol Exp Appl. 2006;121:1–14.
Article
CAS
Google Scholar
Yocum GD, Coudron TA, Brandt SL. Differential gene expression in Perillus bioculatus nymphs fed a suboptimal artificial diet. J Insect Physiol. 2006;52:586–92.
Article
CAS
PubMed
Google Scholar
Zou DY, Coudron TA, Liu CX, Zhang LS, Wang MQ, Chen HY. Nutrigenomics in Arma chinensis: transcriptome analysis of Arma chinensis fed on artificial diet and Chinese oak silk moth Antheraea pernyi pupae. PLoS One. 2013;8:e60881.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zou DY, Coudron TA, Zhang LS, Gu XS, Xu WH, Liu XL, et al. Performance of Arma chinensis reared on an artificial diet formulated using transcriptomic methods. Bull Entomol Res. 2018;109:24–33.
Article
PubMed
CAS
Google Scholar
Coudron TA, Brandt SL, Hunter WB. Molecular profiling of proteolytic and lectin transcripts in Homalodisca vitripennis (Hemiptera: Auchenorrhyncha: Cicadellidae) feeding on sunflower and cowpea. Arch Insect Biochem. 2007;66:76–88.
Article
CAS
Google Scholar
Vilcinskas A, Mukherjee K, Vogel H. Expansion of the antimicrobial peptide repertoire in the invasive ladybird Harmonia axyridis. P Roy Soc B-Biol Sci. 2013;280:20122113.
Google Scholar
Sun Y-X, Hao Y-N, Riddick EW, Liu T-X. Factitious prey and artificial diets for predatory lady beetles: current situation, obstacles, and approaches for improvement: a review. Biocontrol Sci Tech. 2017;27:601–19.
Article
Google Scholar
Riddick EW. Benefits and limitations of factitious prey and artificial diets on life parameters of predatory beetles, bugs, and lacewings: a mini-review. BioControl. 2008;54:325–39.
Article
Google Scholar
Alaux C, Ducloz F, Crauser D, Le Conte Y. Diet effects on honeybee immunocompetence. Biol Lett. 2010;6:562–5.
Article
PubMed
PubMed Central
Google Scholar
Cotter SC, Simpson SJ, Raubenheimer D, Wilson K. Macronutrient balance mediates trade-offs between immune function and life history traits. Funct Ecol. 2010;25:186–98.
Article
Google Scholar
Srygley RB, Lorch PD. Weakness in the band: nutrient-mediated trade-offs between migration and immunity of Mormon crickets, Anabrus simplex. Anim Behav. 2011;81:395–400.
Article
Google Scholar
Jacobs CG, Steiger S, Heckel DG, Wielsch N, Vilcinskas A, Vogel H. Sex, offspring and carcass determine antimicrobial peptide expression in the burying beetle. Sci Rep. 2016;6:25409.
Article
CAS
PubMed
PubMed Central
Google Scholar
Baumann P. Diversity of prokaryote–insect associations within the Sternorrhyncha (psyllids, whiteflies, aphids, mealybugs). In: Bourtzis K, Miller T, editors. Insect Symbiosis, vol. 2: CRC Press; 2006. p. 23–46.
Brownlie JC, Johnson KN. Symbiont-mediated protection in insect hosts. Trends Microbiol. 2009;17:348–54.
Article
CAS
PubMed
Google Scholar
McLean AHC. Cascading effects of defensive endosymbionts. Curr Opin Insect Sci. 2019;32:42–6.
Article
PubMed
Google Scholar
Haine ER. Symbiont-mediated protection. Proc Biol Sci. 2008;275:353–61.
PubMed
Google Scholar
Piel J, Hui D, Wen G, Butzke D, Platzer M, Fusetani N, et al. Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei. P Natl Acad Sci U S A. 2004;101:16222–7.
Article
CAS
Google Scholar
Schmidtberg H, Shukla SP, Halitschke R, Vogel H, Vilcinskas A. Symbiont-mediated chemical defense in the invasive ladybird Harmonia axyridis. Ecol Evol. 2019;9:1715–29.
Article
PubMed
PubMed Central
Google Scholar
Li H-S, Heckel G, Huang Y-H, Fan W-J, Slipinski A, Pang H. Genomic changes in the biological control agent Cryptolaemus montrouzieri associated with introduction. Evol Appl. 2019;12:989–1000.
Article
CAS
PubMed
PubMed Central
Google Scholar
Milligan BG. Total DNA isolation. In: Hoelzel AR, editor. Molecular genetic analysis of populations. Oxford: Oxford University Press; 1988. p. 29–64.
Google Scholar
De Coster W, D'Hert S, Schultz DT, Cruts M, Van Broeckhoven C. NanoPack: visualizing and processing long-read sequencing data. Bioinformatics. 2018;34:2666–9.
Article
PubMed
PubMed Central
CAS
Google Scholar
Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Res. 2017;27:722–36.
CAS
PubMed
PubMed Central
Google Scholar
Vaser R, Sovic I, Nagarajan N, Sikic M. Fast and accurate de novo genome assembly from long uncorrected reads. Genome Res. 2017;27:737–46.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114–20.
Article
CAS
PubMed
PubMed Central
Google Scholar
Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, et al. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One. 2014;9.
Kim D, Landmead B, Salzberg SLHISAT. A fast spliced aligner with low memory requirements. Nat Methods. 2015;12:357–60.
Article
CAS
PubMed
PubMed Central
Google Scholar
Stanke M, Waack S. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics. 2003;19:Ii215–25.
Article
PubMed
Google Scholar
Jones P, Binns D, Chang HY, Fraser M, Li WZ, McAnulla C, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014;30:1236–40.
Article
CAS
PubMed
PubMed Central
Google Scholar
The Gene Ontology C. The Gene Ontology resource: 20 years and still GOing strong. Nucleic Acids Res. 2019;47:D330–8.
Article
CAS
Google Scholar
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, et al. Gene ontology: tool for the unification of biology. Gene Ontol Consortium Nat Genet. 2000;25:25–9.
CAS
Google Scholar
Kanehisa M, Goto SKEGG. Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000;28:27–30.
Article
CAS
PubMed
PubMed Central
Google Scholar
Jaime HC, Kristoffer F, Pedro CL, Damian S, Juhl JL, vM C, et al. Fast genome-wide functional annotation through Orthology assignment by eggNOG-mapper. Mol Biol Evol. 2017;34:2115–22.
Article
CAS
Google Scholar
Altincicek B, Knorr E, Vilcinskas A. Beetle immunity: identification of immune-inducible genes from the model insect Tribolium castaneum. Dev Comp Immunol. 2008;32:585–95.
Article
CAS
PubMed
Google Scholar
Li H-S, Tang X-F, Huang Y-H, Xu Z-Y, Chen M-L, Du X-Y, et al. Horizontally acquired antibacterial genes associated with adaptive radiation of ladybird beetles. BMC Biol. 2021;19:7.
Article
PubMed
PubMed Central
Google Scholar
Emms DM, Kelly S. OrthoFinder: phylogenetic orthology inference for comparative genomics. Genome Biol. 2019;20:238.
Article
PubMed
PubMed Central
Google Scholar
Laetsch DR, Blaxter ML. KinFin: software for taxon-aware analysis of clustered protein sequences. G3-Genes Genom Genet. 2017;7:3349–57.
CAS
Google Scholar
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28:511–5.
Article
CAS
PubMed
PubMed Central
Google Scholar