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Volume 15 Supplement 12

Selected articles from the IX International Conference on the Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2014): Genomics

Research

Edited by Ancha V Baranova and Yuriy L Orlov

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. Articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

IX International Conference on the Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2014). Go to conference site.

Novosibirsk, Russia23-28 June 2014

Related articles have been published in supplements to BMC Evolutionary Biology, BMC Genetics and BMC Systems Biology.

  1. Content type: Research

    The life cycle of human immunodeficiency virus type-1 (HIV-1) makes possible the realization of regulatory strategies that can lead to complex dynamical behavior of the system. We analyze the strategy which is...

    Authors: Vitaly A Likhoshvai, Tamara M Khlebodarova, Sergei I Bazhan, Irina A Gainova, Valery A Chereshnev and Gennady A Bocharov

    Citation: BMC Genomics 2014 15(Suppl 12):S1

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  2. Content type: Research

    Long-term space travel simulation experiments enabled to discover different aspects of human metabolism such as the complexity of NaCl salt balance. Detailed proteomics data were collected during the Mars105 i...

    Authors: Hans Binder, Henry Wirth, Arsen Arakelyan, Kathrin Lembcke, Evgeny S Tiys, Vladimir A Ivanisenko, Nikolay A Kolchanov, Alexey Kononikhin, Igor Popov, Evgeny N Nikolaev, Lyudmila Kh Pastushkova and Irina M Larina

    Citation: BMC Genomics 2014 15(Suppl 12):S2

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  3. Content type: Research

    Etiology of complex disorders, such as cataract and neurodegenerative diseases including age-related macular degeneration (AMD), remains poorly understood due to the paucity of animal models, fully replicating...

    Authors: Elena E Korbolina, Nikita I Ershov, Leonid O Bryzgalov and Natalia G Kolosova

    Citation: BMC Genomics 2014 15(Suppl 12):S3

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  4. Content type: Research

    Auxin responsive elements (AuxRE) were found in upstream regions of target genes for ARFs (Auxin response factors). While Chip-seq data for most of ARFs are still unavailable, prediction of potential AuxRE is ...

    Authors: Victoria V Mironova, Nadezda A Omelyanchuk, Daniil S Wiebe and Victor G Levitsky

    Citation: BMC Genomics 2014 15(Suppl 12):S4

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  5. Content type: Research

    Ionizing radiation in low doses is the ubiquitous environmental factor with harmful stochastic effects. Formaldehyde is one of the most reactive household and industrial pollutants. Dioxins are persistent orga...

    Authors: Alexey Moskalev, Mikhail Shaposhnikov, Ekaterina Plyusnina, Sergey Plyusnin, Olga Shostal, Alexander Aliper and Alex Zhavoronkov

    Citation: BMC Genomics 2014 15(Suppl 12):S5

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  6. Content type: Research

    The detailed analysis of transcriptional regulation is crucially important for understanding biological processes. The gap gene network in Drosophila attracts large interest among researches studying mechanisms o...

    Authors: Konstantin Kozlov, Vitaly Gursky, Ivan Kulakovskiy and Maria Samsonova

    Citation: BMC Genomics 2014 15(Suppl 12):S6

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  7. Content type: Research

    Biological processes are usually distributed over various intracellular compartments. Proteins from diverse cellular compartments are often involved in similar signaling networks. However, the difference in th...

    Authors: Olga Vasil'evna Popik, Olga Vladimirovna Saik, Evgeny Dmitrievich Petrovskiy, Björn Sommer, Ralf Hofestädt, Inna Nikolaevna Lavrik and Vladimir Aleksandrovich Ivanisenko

    Citation: BMC Genomics 2014 15(Suppl 12):S7

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  8. Content type: Research

    Affymetrix microarray technology allows one to investigate expression of thousands of genes simultaneously upon a variety of conditions. In a popular U133A microarray platform, the expression of 37% of genes i...

    Authors: Andrey Marakhonov, Nataliya Sadovskaya, Ivan Antonov, Ancha Baranova and Mikhail Skoblov

    Citation: BMC Genomics 2014 15(Suppl 12):S8

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  9. Content type: Research

    Typically, gene expression biomarkers are being discovered in course of high-throughput experiments, for example, RNAseq or microarray profiling. Analytic pipelines that extract so-called signatures suffer fro...

    Authors: Boris Veytsman, Lei Wang, Tiange Cui, Sergey Bruskin and Ancha Baranova

    Citation: BMC Genomics 2014 15(Suppl 12):S10

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  10. Content type: Research

    Long-range chromatin interactions play an important role in transcription regulation. Chromatin Interaction Analysis with Paired-End-Tag sequencing (ChIA-PET) is an emerging technology that has unique advantag...

    Authors: Guoliang Li, Liuyang Cai, Huidan Chang, Ping Hong, Qiangwei Zhou, Ekaterina V Kulakova, Nikolay A Kolchanov and Yijun Ruan

    Citation: BMC Genomics 2014 15(Suppl 12):S11

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  11. Content type: Research

    Geothermal areas are of great interest for the study of microbial communities. The results of such investigations can be used in a variety of fields (ecology, microbiology, medicine) to answer fundamental ques...

    Authors: Alexey S Rozanov, Alla V Bryanskaya, Tatiana K Malup, Irina A Meshcheryakova, Elena V Lazareva, Oksana P Taran, Timofey V Ivanisenko, Vladimir A Ivanisenko, Sergey M Zhmodik, Nikolay A Kolchanov and Sergey E Peltek

    Citation: BMC Genomics 2014 15(Suppl 12):S12

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