Volume 18 Supplement 1

Proceedings of the 27th International Conference on Genome Informatics: genomics

Research

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

Shanghai, China

3-5 October 2016

Conference website

Edited by Shuigeng Zhou, Yi-Ping Phoebe Chen and Hiroshi Mamitsuka

Related articles have been published in supplements to BMC Bioinformatics and BMC Systems Biology.

  1. Research

    Transcriptome analysis reveals dynamic changes in coxsackievirus A16 infected HEK 293T cells

    Coxsackievirus A16 (CVA16) and enterovirus 71 (EV71) are two of the major causes of hand, foot and mouth disease (HFMD) world-wide. Although many studies have focused on infection and pathogenic mechanisms, th...

    Jun Jin, Rujiao Li, Chunlai Jiang, Ruosi Zhang, Xiaomeng Ge, Fang Liang, Xin Sheng, Wenwen Dai, Meili Chen, Jiayan Wu, Jingfa Xiao and Weiheng Su

    BMC Genomics 2017 18(Suppl 1):933

    Published on: 25 January 2017

  2. Research

    Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis

    Periodontitis is an inflammatory disease affecting the tissues supporting teeth (periodontium). Integrative analysis of metagenomic samples from multiple periodontitis studies is a powerful way to examine micr...

    Dongmei Ai, Ruocheng Huang, Jin Wen, Chao Li, Jiangping Zhu and Li Charlie Xia

    BMC Genomics 2017 18(Suppl 1):1041

    Published on: 25 January 2017

  3. Research

    MetaTopics: an integration tool to analyze microbial community profile by topic model

    Deciphering taxonomical structures based on high dimensional sequencing data is still challenging in metagenomics study. Moreover, the common workflow processed in this field fails to identify microbial commun...

    Jifang Yan, Guohui Chuai, Tao Qi, Fangyang Shao, Chi Zhou, Chenyu Zhu, Jing Yang, Yifei Yu, Cong Shi, Ning Kang, Yuan He and Qi Liu

    BMC Genomics 2017 18(Suppl 1):962

    Published on: 25 January 2017

  4. Research

    ulfasQTL: an ultra-fast method of composite splicing QTL analysis

    Alternative splicing plays important roles in many regulatory processes and diseases in human. Many genetic variants contribute to phenotypic differences in gene expression and splicing that determine variatio...

    Qian Yang, Yue Hu, Jun Li and Xuegong Zhang

    BMC Genomics 2017 18(Suppl 1):963

    Published on: 25 January 2017

  5. Research

    DeSigN: connecting gene expression with therapeutics for drug repurposing and development

    The drug discovery and development pipeline is a long and arduous process that inevitably hampers rapid drug development. Therefore, strategies to improve the efficiency of drug development are urgently needed...

    Bernard Kok Bang Lee, Kai Hung Tiong, Jit Kang Chang, Chee Sun Liew, Zainal Ariff Abdul Rahman, Aik Choon Tan, Tsung Fei Khang and Sok Ching Cheong

    BMC Genomics 2017 18(Suppl 1):934

    Published on: 25 January 2017

  6. Research

    Diversity and enterotype in gut bacterial community of adults in Taiwan

    Gastrointestinal microbiota, particularly gut microbiota, is associated with human health. The biodiversity of gut microbiota is affected by ethnicities and environmental factors such as dietary habits or medi...

    Chao Liang, Han-Chi Tseng, Hui-Mei Chen, Wei-Chi Wang, Chih-Min Chiu, Jen-Yun Chang, Kuan-Yi Lu, Shun-Long Weng, Tzu-Hao Chang, Chao-Hsiang Chang, Chen-Tsung Weng, Hwei-Ming Wang and Hsien-Da Huang

    BMC Genomics 2017 18(Suppl 1):932

    Published on: 25 January 2017

  7. Research

    Predicting disease-related genes using integrated biomedical networks

    Identifying the genes associated to human diseases is crucial for disease diagnosis and drug design. Computational approaches, esp. the network-based approaches, have been recently developed to identify diseas...

    Jiajie Peng, Kun Bai, Xuequn Shang, Guohua Wang, Hansheng Xue, Shuilin Jin, Liang Cheng, Yadong Wang and Jin Chen

    BMC Genomics 2017 18(Suppl 1):1043

    Published on: 25 January 2017

  8. Research

    Decipher the ancestry of the plant-specific LBD gene family

    Lateral Organ Boundaries Domain (LBD) genes arise from charophyte algae and evolve essential functions in land plants in regulating organ development and secondary metabolism. Although...

    Yimeng Kong, Peng Xu, Xinyun Jing, Longxian Chen, Laigeng Li and Xuan Li

    BMC Genomics 2017 18(Suppl 1):951

    Published on: 25 January 2017

  9. Research

    Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

    Selaginella moellendorffii, a lycophyte, is a model plant to study the early evolution and development of vascular plants. As the first and only sequenced lycophyte to date, the genome...

    Yan Zhu, Longxian Chen, Chengjun Zhang, Pei Hao, Xinyun Jing and Xuan Li

    BMC Genomics 2017 18(Suppl 1):1042

    Published on: 25 January 2017

  10. Research

    GAAP: Genome-organization-framework-Assisted Assembly Pipeline for prokaryotic genomes

    Next-generation sequencing (NGS) technologies have greatly promoted the genomic study of prokaryotes. However, highly fragmented assemblies due to short reads from NGS are still a limiting factor in gaining in...

    Lina Yuan, Yang Yu, Yanmin Zhu, Yulai Li, Changqing Li, Rujiao Li, Qin Ma, Gilman Kit-Hang Siu, Jun Yu, Taijiao Jiang, Jingfa Xiao and Yu Kang

    BMC Genomics 2017 18(Suppl 1):952

    Published on: 25 January 2017

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