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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 121 of 128

  1. Virome studies on birds, including chickens are relatively scarce, particularly from the African continent. Despite the continuous evolution of RNA viruses and severe losses recorded in poultry from seasonal v...

    Authors: Vivian C. Nwokorogu, Santhosh Pillai, James E. San, Charlene Pillay, Martin M. Nyaga and Saheed Sabiu
    Citation: BMC Genomics 2024 25:629
    Content type: Research Published on:

  2. Flowering time and active accumulated temperature (AAT) are two key factors that limit the expanded production especially for soybean across different regions. Wild soybean provides an important germplasm for ...

    Authors: Guang Yang, Wei Li, Chao Fan, Miao Liu, Jianxin Liu, Wenwei Liang, Ling Wang, Shufeng Di, Chao Fang, Haiyang Li, Guohua Ding, Yingdong Bi and Yongcai Lai
    Citation: BMC Genomics 2022 23:749
    Content type: Research Published on:

  3. The genetic diversity of Neotropical fish fauna is underrepresented in public databases. This distortion is evident for the order Siluriformes, in which the suborders Siluroidei and Loricarioidei share equival...

    Authors: Daniel Andrade Moreira, Paulo Andreas Buckup, Carolina Furtado, Adalberto Luis Val, Renata Schama and Thiago Estevam Parente
    Citation: BMC Genomics 2017 18:345
    Content type: Research article Published on:

  4. The challenges of accurate gene prediction and enumeration are further aggravated in large genomes that contain highly repetitive transposable elements (TEs). Yet TEs play a substantial role in genome evolutio...

    Authors: Stefan Kurtz, Apurva Narechania, Joshua C Stein and Doreen Ware
    Citation: BMC Genomics 2008 9:517
    Content type: Methodology article Published on:

  5. Previous reports have shown that soil salinity is a growing threat to cowpea production, and thus the need for breeding salt-tolerant cowpea cultivars. A total of 234 Multi-Parent Advanced Generation Inter-Cro...

    Authors: Waltram Ravelombola, Ainong Shi, Bao-Lam Huynh, Jun Qin, Haizheng Xiong, Aurora Manley, Lingdi Dong, Dotun Olaoye, Gehendra Bhattarai, Bazgha Zia, Huda Alshaya and Ibtisam Alatawi
    Citation: BMC Genomics 2022 23:100
    Content type: Research Published on:

  6. The common dolphin (Delphinus delphis) is widely distributed worldwide and well adapted to various habitats. Animal genomes store clues about their pasts, and can reveal the genes underlying their evolutionary su...

    Authors: Kui Ding, Qinzeng Xu, Liyuan Zhao, Yixuan Li, Zhong Li, Wenge Shi, Qianhui Zeng, Xianyan Wang and Xuelei Zhang
    Citation: BMC Genomics 2024 25:373
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2024 25:499

  7. The tricarboxylic acid (TCA) cycle is crucial for energy supply in animal, plant, and microbial cells. It is not only the main pathway of carbohydrate catabolism but also the final pathway of lipid and protein...

    Authors: Yongming Liu, Jingtao Qu, Ziwen Shi, Peng Zhang and Maozhi Ren
    Citation: BMC Genomics 2021 22:821
    Content type: Research Published on:

  8. Dendrobium officinale Kimura et Migo (D. officinale) is a well-known traditional Chinese medicine with high content polysaccharides in stems. The SWEET (Sugars Will Eventually be Exported Transporters) family is ...

    Authors: Li Hao, Xin Shi, Shunwang Qin, Jiahong Dong, Huan Shi, Yuehua Wang and Yi Zhang
    Citation: BMC Genomics 2023 24:378
    Content type: Research Published on:

  9. Experimental evolution of microbial populations provides a unique opportunity to study evolutionary adaptation in response to controlled selective pressures. However, until recently it has been difficult to id...

    Authors: Carlos L Araya, Celia Payen, Maitreya J Dunham and Stanley Fields
    Citation: BMC Genomics 2010 11:88
    Content type: Methodology article Published on:

  10. High-throughput sequencing technology is capable to identify novel short RNAs in plant species. We used Solexa sequencing to find new microRNAs in one of the model legume species, barrel medic (Medicago truncatul...

    Authors: Gyorgy Szittya, Simon Moxon, Dulce M Santos, Runchun Jing, Manuel PS Fevereiro, Vincent Moulton and Tamas Dalmay
    Citation: BMC Genomics 2008 9:593
    Content type: Research article Published on:

  12. Conception is a fundamental trait for successful cattle reproduction. However, conception rates in Japanese Black cattle have been gradually declining over the last two decades. Although conception failures ar...

    Authors: Shinji Sasaki, Takayuki Ibi, Takayuki Akiyama, Moriyuki Fukushima and Yoshikazu Sugimoto
    Citation: BMC Genomics 2016 17:968
    Content type: Research article Published on:

  14. The common cutworm, Spodoptera litura Fabricius is a leaf and fruit feeding generalist insect of the order Lepidoptera and a destructive agriculture pest. The broad host range of the herbivore is due to its abili...

    Authors: Vinod Kumar Prajapati, Mahendra Varma and Jyothilakshmi Vadassery
    Citation: BMC Genomics 2020 21:819
    Content type: Research article Published on:

  15. The current chassis organisms or various types of cell factories have considerable advantages and disadvantages. Therefore, it is necessary to develop various chassis for an efficient production of different b...

    Authors: Xuemei Shen, Zheng Wang, Xianqing Huang, Hongbo Hu, Wei Wang and Xuehong Zhang
    Citation: BMC Genomics 2017 18:715
    Content type: Research article Published on:

  16. It has been suggested that prophages in the ST398 S. aureus clone are responsible for expanding ST398's spectrum of action and increasing its ability to cause human infections. We carried out the first characteri...

    Authors: Seydina M. Diene, Anna Rita Corvaglia, Patrice François and Nathalie van der Mee-Marquet
    Citation: BMC Genomics 2017 18:133
    Content type: Research article Published on:

  17. Simple Sequence Repeats (SSRs) are widely used in population genetic studies but their classical development is costly and time-consuming. The ever-increasing available DNA datasets generated by high-throughpu...

    Authors: Lua Lopez, Rodolfo Barreiro, Markus Fischer and Marcus A. Koch
    Citation: BMC Genomics 2015 16:781
    Content type: Research article Published on:

  18. Mycoplasma pneumoniae is a common pathogen that causes upper and lower respiratory tract infections in people of all ages, responsible for up to 40 % of community-acquired pneumonias. ...

    Authors: Li Xiao, Travis Ptacek, John D. Osborne, Donna M. Crabb, Warren L. Simmons, Elliot J. Lefkowitz, Ken B. Waites, T. Prescott Atkinson and Kevin Dybvig
    Citation: BMC Genomics 2015 16:610
    Content type: Research article Published on:

  19. The goat (Capra hircus) represents one of the most important farm animal species. It is reared in all continents with an estimated world population of about 800 million of animals. Despite its importance, studies...

    Authors: Luca Fontanesi, Pier Luigi Martelli, Francesca Beretti, Valentina Riggio, Stefania Dall'Olio, Michela Colombo, Rita Casadio, Vincenzo Russo and Baldassare Portolano
    Citation: BMC Genomics 2010 11:639
    Content type: Research article Published on:

  20. The pig is a biomedical model to study human and livestock traits. Many of these traits are controlled by neuropeptides that result from the cleavage of prohormones by prohormone convertases. Only 45 prohormon...

    Authors: Kenneth I Porter, Bruce R Southey, Jonathan V Sweedler and Sandra L Rodriguez-Zas
    Citation: BMC Genomics 2012 13:582
    Content type: Research article Published on:

  21. Microbial remediation of heavy metal polluted environment is ecofriendly and cost effective. Therefore, in the present study, Shewanella putrefaciens stain 4H was previously isolated by our group from the activat...

    Authors: Yajun Cai, Xu Chen, Hanghang Qi, Fantong Bu, Muhammad Shaaban and Qi-An Peng
    Citation: BMC Genomics 2024 25:136
    Content type: Research Published on:

  23. The nematode Caenorhabditis elegans was the first multicellular organism to have its genome fully sequenced. Over the last 10 years since the original publication in 1998, the C. elegans genome has been scrutiniz...

    Authors: Ismael A Vergara, Allan K Mah, Jim C Huang, Maja Tarailo-Graovac, Robert C Johnsen, David L Baillie and Nansheng Chen
    Citation: BMC Genomics 2009 10:329
    Content type: Research article Published on:

  25. The current approach to reducing the tendency for wheat grown under high fertilizer conditions to collapse (lodge) under the weight of its grain is based on reducing stem height via the introduction of Rht genes....

    Authors: Charlotte N. Miller, Andrea L. Harper, Martin Trick, Peter Werner, Keith Waldron and Ian Bancroft
    Citation: BMC Genomics 2016 17:500
    Content type: Research article Published on:

  26. Chinese bayberry (Myrica rubra Sieb. & Zucc.) is an economically important fruit tree characterized by its juicy fruits rich in antioxidant compounds. Elucidating the genetic basis of the biosynthesis of active a...

    Authors: Haiying Ren, Haiyan Yu, Shuwen Zhang, Senmiao Liang, Xiliang Zheng, Shujian Zhang, Pu Yao, Hongkun Zheng and Xingjiang Qi
    Citation: BMC Genomics 2019 20:458
    Content type: Research article Published on:

  27. Single-cell transcriptomics allows researchers to investigate complex communities of heterogeneous cells. It can be applied to stem cells and their descendants in order to chart the progression from multipoten...

    Authors: Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom and Sandrine Dudoit
    Citation: BMC Genomics 2018 19:477
    Content type: Methodology article Published on:

  28. The overwhelming amount of network data in functional genomics is making its visualization cluttered with jumbling nodes and edges. Such cluttered network visualization, which is known as "hair-balls", is sign...

    Authors: Thanet Praneenararat, Toshihisa Takagi and Wataru Iwasaki
    Citation: BMC Genomics 2012 13(Suppl 7):S24
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 13 Supplement 7

  29. Brassica plant species are attacked by a number of pathogens; among them, the ones with a soil-borne lifestyle have become increasingly important. Verticillium stem stripe caused by Verticillium longisporum is on...

    Authors: Johan Fogelqvist, Georgios Tzelepis, Sarosh Bejai, Jonas Ilbäck, Arne Schwelm and Christina Dixelius
    Citation: BMC Genomics 2018 19:14
    Content type: Research article Published on:

  31. Transcriptome-wide survey divulged a total of 181 ABC transporters in G. glabra which were phylogenetically classified into six subfamilies. Protein–Protein interactions revealed nine putative GgABCBs (-B6, -B14,...

    Authors: Ritu Devi, Pooja Goyal, Bhawna Verma, Shahnawaz Hussain, Fariha Chowdhary, Palak Arora and Suphla Gupta
    Citation: BMC Genomics 2024 25:315
    Content type: Research Published on:

  33. Vernalization is an obligatory requirement of extended exposure to low temperatures to induce flowering in certain plants. It is the most important factor affecting flowering time and quality in Easter lily (Lili...

    Authors: Carlos Villacorta-Martin, Francisco F. Núñez de Cáceres González, Jorn de Haan, Kitty Huijben, Paul Passarinho, Maya Lugassi-Ben Hamo and Michele Zaccai
    Citation: BMC Genomics 2015 16:550
    Content type: Research article Published on:

  34. Lamprosema indicate is a major leaf feeding insect pest to soybean, which has caused serious yield losses in central and southern China. To explore the defense mechanisms of soybean resistance to Lamprosema indic...

    Authors: Weiying Zeng, Zudong Sun, Zhaoyan Cai, Huaizhu Chen, Zhenguang Lai, Shouzhen Yang and Xiangmin Tang
    Citation: BMC Genomics 2017 18:444
    Content type: Research article Published on:

  35. In recent years, interest in Bacillus velezensis has increased significantly due to its role in many industrial water bioremediation processes. In this study, we isolated and assessed the transcriptome of Bacillu...

    Authors: Guangxin Liu, Sarath Babu Vijayaraman, Yanjun Dong, Xinfeng Li, Binda Tembeng Andongmaa, Lijuan Zhao, Jiagang Tu, Jin He and Li Lin
    Citation: BMC Genomics 2020 21:215
    Content type: Research article Published on:

  37. Lipid metabolism plays a pivotal role in asthma pathogenesis. However, a comprehensive analysis of the importance of lipid metabolism-related genes (LMRGs) in regulating the immune microenvironment in asthma r...

    Authors: Yuanmin Jia, Haixia Wang, Bin Ma, Zeyi Zhang, Jingjing Wang, Jin Wang and Ou Chen
    Citation: BMC Genomics 2024 25:129
    Content type: Research Published on:

  38. The two-spotted spider mite, Tetranychus urticae, is an extreme generalist plant pest. Even though mites can feed on many plant species, local mite populations form host races that do not perform equally well on ...

    Authors: Jose Díaz-Riquelme, Vladimir Zhurov, Cristina Rioja, Ignacio Pérez-Moreno, Rafael Torres-Pérez, Jérôme Grimplet, Pablo Carbonell-Bejerano, Sabina Bajda, Thomas Van Leeuwen, José Miguel Martínez-Zapater, Miodrag Grbic and Vojislava Grbic
    Citation: BMC Genomics 2016 17:74
    Content type: Research article Published on:

  39. Proper cell models for breast cancer primary tumors have long been the focal point in the cancer’s research. The genomic comparison between cell lines and tumors can investigate the similarity and dissimilarit...

    Authors: Guanglong Jiang, Shijun Zhang, Aida Yazdanparast, Meng Li, Aniruddha Vikram Pawar, Yunlong Liu, Sai Mounika Inavolu and Lijun Cheng
    Citation: BMC Genomics 2016 17(Suppl 7):525
    Content type: Research Published on:

    This article is part of a Supplement: Volume 17 Supplement 7

  40. Sinorhizobium meliloti is a soil bacterium that forms nitrogen-fixing nodules on the roots of leguminous plants such as alfalfa (Medicago sativa). This species occupies different ecological niches, being present ...

    Authors: Elisa Giuntini, Alessio Mengoni, Carlotta De Filippo, Duccio Cavalieri, Nadia Aubin-Horth, Christian R Landry, Anke Becker and Marco Bazzicalupo
    Citation: BMC Genomics 2005 6:158
    Content type: Research article Published on:

  41. Cultivated soybean (Glycine max) is a major agricultural crop that provides a crucial source of edible protein and oil. Decreased amounts of saturated palmitic acid and increased amounts of unsaturated oleic acid...

    Authors: Larry J. Leamy, Hengyou Zhang, Changbao Li, Charles Y. Chen and Bao-Hua Song
    Citation: BMC Genomics 2017 18:18
    Content type: Research article Published on:

  42. Modern horses represent heterogeneous populations specifically selected for appearance and performance. Genomic regions under high selective pressure show characteristic runs of homozygosity (ROH) which repres...

    Authors: Julia Metzger, Matthias Karwath, Raul Tonda, Sergi Beltran, Lídia Águeda, Marta Gut, Ivo Glynne Gut and Ottmar Distl
    Citation: BMC Genomics 2015 16:764
    Content type: Research article Published on:

  43. DNA methylation plays an important role in multiple biological processes that are closely related to human health. The study of DNA methylation can provide an insight into the mechanism behind human health and...

    Authors: Limin Jiang, Chongqing Wang, Jijun Tang and Fei Guo
    Citation: BMC Genomics 2019 20:306
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2019 20:365

  46. A promising application of the huge amounts of genetic data currently available lies in developing a better understanding of complex diseases, such as cancer. Analysis of publicly available databases can help ...

    Authors: Abdel Aouacheria, Vincent Navratil, Ricardo López-Pérez, Norma C Gutiérrez, Alexander Churkin, Danny Barash, Dominique Mouchiroud and Christian Gautier
    Citation: BMC Genomics 2007 8:2
    Content type: Research article Published on:

  47. Many BURP domain-containing proteins, which are unique to plants, have been identified. They performed diverse functions in plant development and the stress response. To date, only a few BURP domain-containing...

    Authors: Huiru Sun, Hengling Wei, Hantao Wang, Pengbo Hao, Lijiao Gu, Guoyuan Liu, Liang Ma, Zhengzheng Su and Shuxun Yu
    Citation: BMC Genomics 2019 20:558
    Content type: Research article Published on:

  48. Human gut microbiota plays an important role in the pathogenesis of cirrhosis complications. Although the phylogenetic diversity of intestinal microbiota in patients with liver cirrhosis has been examined in s...

    Authors: Yanfei Chen, Nan Qin, Jing Guo, Guirong Qian, Daiqiong Fang, Ding Shi, Min Xu, Fengling Yang, Zhili He, Joy D Van Nostrand, Tong Yuan, Ye Deng, Jizhong Zhou and Lanjuan Li
    Citation: BMC Genomics 2014 15:753
    Content type: Research article Published on:

  49. Snails belong to the molluscan class Gastropoda, which inhabit land, freshwater and marine environments. Several land snail species, including Theba pisana, are crop pests of major concern, causing extensive dama...

    Authors: Kevin J Adamson, Tianfang Wang, Min Zhao, Francesca Bell, Anna V Kuballa, Kenneth B Storey and Scott F Cummins
    Citation: BMC Genomics 2015 16:308
    Content type: Research article Published on:

  50. COI (CORONATINE INSENSITIVE), an F-box component of the Skp1-Cullin-F-box protein (SCFCOI1) ubiquitin E3 ligase, plays important roles in the regulation of plant growth and development. Recent studies have shown ...

    Authors: Jian-fang Bai, Yu-kun Wang, Peng Wang, Shao-hua Yuan, Jian-gang Gao, Wen-jing Duan, Na Wang, Feng-ting Zhang, Wen-jie Zhang, Meng-ying Qin, Chang-ping Zhao and Li-ping Zhang
    Citation: BMC Genomics 2018 19:754
    Content type: Research article Published on:

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