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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Copy number variations (CNVs) are modifications in DNA structure comprising of deletions, duplications, insertions and complex multi-site variants. Although CNVs are proven to be involved in a variety of pheno...

    Authors: Magretha Diane Wang, Kennedy Dzama, Charles A. Hefer and Farai C. Muchadeyi
    Citation: BMC Genomics 2015 16:894
    Content type: Research article Published on:

  2. Pleiotropic Drug Resistant transporters (PDR) are members of the ATP-Binding Cassette (ABC) subfamily which export antifungals and other xenobiotics in fungi and plants. This subfamily of transmembrane transpo...

    Authors: Marie-Line Seret, Julie F Diffels, André Goffeau and Philippe V Baret
    Citation: BMC Genomics 2009 10:459
    Content type: Research article Published on:

  3. In order to better understand the multifactorial nature of osteoporosis, animal models are utilized and compared to healthy controls. Female sheep are well established as a model for osteoporosis induced by ov...

    Authors: Felix Schulze, Deeksha Malhan, Thaqif El Khassawna, Christian Heiss, Anja Seckinger, Dirk Hose and Angela Rösen-Wolff
    Citation: BMC Genomics 2017 18:975
    Content type: Methodology article Published on:

  4. Avian reovirus (ARV) is an important poultry pathogen that can cause immunosuppression. In this study, RNA-Seq technology was applied to investigate the transcriptome-wide changes of DF-1 cells upon ARV infect...

    Authors: Xiaosai Niu, Yuyang Wang, Min Li, Xiaorong Zhang and Yantao Wu
    Citation: BMC Genomics 2017 18:911
    Content type: Research article Published on:

  5. Melatonin is a ubiquitous molecule and exists across kingdoms. Studies on melatonin in plants have mainly focused on its physiological influence on growth and development, and on its biosynthesis. A number of ...

    Authors: Yihe Yu, Lu Bian, Zeling Jiao, Keke Yu, Yutong Wan, Guohai Zhang and Dalong Guo
    Citation: BMC Genomics 2019 20:880
    Content type: Research article Published on:

  6. During must fermentation thousands of volatile aroma compounds are formed, with higher alcohols, acetate esters and ethyl esters being the main aromatic compounds contributing to floral and fruity aromas. The ...

    Authors: Inês Mendes, Isabelle Sanchez, Ricardo Franco-Duarte, Carole Camarasa, Dorit Schuller, Sylvie Dequin and Maria João Sousa
    Citation: BMC Genomics 2017 18:455
    Content type: Research article Published on:

  7. With the completion of the whole genome sequence for many organisms, investigations into genomic structure have revealed that gene distribution is variable, and that genes with similar function or expression a...

    Authors: Simon C Lovell, Xiting Li, Nimmi R Weerasinghe and Kathryn E Hentges
    Citation: BMC Genomics 2009 10:521
    Content type: Research article Published on:

  8. Morinda officinalis How (MO) is a perennial herb distributed in tropical and subtropical regions, which known as one of the “Four Southern Herbal Medicines”. The extent of genetic variability and the population s...

    Authors: Zhenhua Luo, Zien Chen, Mengyun Liu, Li Yang, Zhimin Zhao, Depo Yang and Ping Ding
    Citation: BMC Genomics 2022 23:605
    Content type: Research Published on:

  9. Boar taint is an offensive urine or faecal-like odour, affecting the smell and taste of cooked pork from some mature non-castrated male pigs. Androstenone and skatole in fat are the molecules responsible. In m...

    Authors: Suzanne J Rowe, Burak Karacaören, Dirk-Jan de Koning, Boris Lukic, Nicola Hastings-Clark, Ingela Velander, Chris S Haley and Alan L Archibald
    Citation: BMC Genomics 2014 15:424
    Content type: Research article Published on:

  10. The genome of pathogenic Leptospira interrogans contains two chromosomes. Plasmids and prophages are known to play specific roles in gene transfer in bacteria and can potentially serve as efficient genetic tools ...

    Authors: Weinan Zhu, Jin Wang, Yongzhang Zhu, Biao Tang, Yunyi Zhang, Ping He, Yan Zhang, Boyu Liu, Xiaokui Guo, Guoping Zhao and Jinhong Qin
    Citation: BMC Genomics 2015 16:90
    Content type: Research article Published on:

  11. With the development of inexpensive, high-throughput sequencing technologies, it has become feasible to examine questions related to population genetics and molecular evolution of non-model species in their ec...

    Authors: Zachary L. Fuller, Elina L. Niño, Harland M. Patch, Oscar C. Bedoya-Reina, Tracey Baumgarten, Elliud Muli, Fiona Mumoki, Aakrosh Ratan, John McGraw, Maryann Frazier, Daniel Masiga, Stephen Schuster, Christina M. Grozinger and Webb Miller
    Citation: BMC Genomics 2015 16:518
    Content type: Research article Published on:

  13. Artemisia annua is the major source for artemisinin production. The artemisinin content in A. annua is affected by different types of light especially the UV light. UVR8, a member of RCC1 gene family was found to...

    Authors: Jieting Chen, Wenguang Wu, Xiaoxia Ding, Danchun Zhang, Chunyan Dai, Hengyu Pan, Peiqi Shi, Chanjuan Wu, Jun Zhang, Jianmin Zhao, Baosheng Liao, Xiaohui Qiu and Zhihai Huang
    Citation: BMC Genomics 2023 24:692
    Content type: Research Published on:

  14. Effector secretion is a common strategy of pathogen in mediating host-pathogen interaction. Eight EPIYA-motif containing effectors have recently been discovered in six pathogens. Once these effectors enter hos...

    Authors: Shunfu Xu, Chao Zhang, Yi Miao, Jianjiong Gao and Dong Xu
    Citation: BMC Genomics 2010 11(Suppl 3):S1
    Content type: Research Published on:

    This article is part of a Supplement: Volume 11 Supplement 3

  15. Copy number variation (CNV) represents an important source of genetic divergence that can produce drastic phenotypic differences and may therefore be subject to selection during domestication and environmental...

    Authors: Xiao Zhang, Kun Wang, Lizhong Wang, Yongzhi Yang, Zhengqiang Ni, Xiuyue Xie, Xuemin Shao, Jin Han, Dongshi Wan and Qiang Qiu
    Citation: BMC Genomics 2016 17:379
    Content type: Research article Published on:

  16. MicroRNAs (miRNAs) in milk-derived exosomes may reflect pathophysiological changes caused by mastitis. This study profiled miRNAs in exosomes from both normal milk and mastitic milk infected by Staphylococcus aur...

    Authors: Shaoyang Ma, Chao Tong, Eveline M. Ibeagha-Awemu and Xin Zhao
    Citation: BMC Genomics 2019 20:934
    Content type: Research article Published on:

  17. Crown gall (CG) (Agrobacterium tumefaciens) and the root lesion nematodes (RLNs) (Pratylenchus vulnus) are major challenges faced by the California walnut industry, reducing productivity and increasing the cost o...

    Authors: Sriema L Walawage, Monica T Britton, Charles A Leslie, Sandra L Uratsu, YingYue Li and Abhaya M Dandekar
    Citation: BMC Genomics 2013 14:668
    Content type: Research article Published on:

  18. Comprehensive analysis of multiple data sets can identify potential driver genes for various cancers. In recent years, driver gene discovery based on massive mutation data and gene interaction networks has att...

    Authors: Xin Chu, Boxin Guan, Lingyun Dai, Jin-xing Liu, Feng Li and Junliang Shang
    Citation: BMC Genomics 2023 24:426
    Content type: Research Published on:

  19. Parasitic insects are well-known biological control agents for arthropod pests worldwide. They are capable of regulating their host’s physiology, development and behaviour. However, many of the molecular mecha...

    Authors: Min Shi, Zhizhi Wang, Xiqian Ye, Hongqing Xie, Fei Li, Xiaoxiao Hu, Zehua Wang, Chuanlin Yin, Yuenan Zhou, Qijuan Gu, Jiani Zou, Leqing Zhan, Yuan Yao, Jian Yang, Shujun Wei, Rongmin Hu…
    Citation: BMC Genomics 2019 20:893
    Content type: Research article Published on:

  20. Tall fescue is a widely used cool season turfgrass and relatively sensitive to high temperature. Chemical compounds like melatonin (MT) and 24-epibrassinolide (EBL) have been reported to improve plant heat str...

    Authors: Mohammad Nur Alam, Lihua Zhang, Li Yang, Md. Rabiul Islam, Yang Liu, Hong Luo, Pingfang Yang, Qingfeng Wang and Zhulong Chan
    Citation: BMC Genomics 2018 19:224
    Content type: Research article Published on:

  21. Loss of function in genes required for telomere maintenance result in disorders known as telomeropathies, which are characterized by a pattern of symptoms including generalized and specific lymphocytopenias as...

    Authors: Brody Holohan, Wanil Kim, Tsung-Po Lai, Hirotoshi Hoshiyama, Ning Zhang, Anas M. Alazami, Woodring E. Wright, M. Stephen Meyn, Fowzan S. Alkuraya and Jerry W. Shay
    Citation: BMC Genomics 2016 17(Suppl 9):749
    Content type: Research Published on:

    This article is part of a Supplement: Volume 17 Supplement 9

  22. Gene-set analysis (GSA) has been commonly used to identify significantly altered pathways or functions from omics data. However, GSA often yields a long list of gene-sets, necessitating efficient post-processi...

    Authors: Sora Yoon, Jinhwan Kim, Seon-Kyu Kim, Bukyung Baik, Sang-Mun Chi, Seon-Young Kim and Dougu Nam
    Citation: BMC Genomics 2019 20:352
    Content type: Methodology article Published on:

  23. Interferon inducible transmembrane (IFITM) proteins are effectors of the immune system widely characterized for their role in restricting infection by diverse enveloped and non-enveloped viruses. The chicken IFIT...

    Authors: Irene Bassano, Swee Hoe Ong, Nathan Lawless, Thomas Whitehead, Mark Fife and Paul Kellam
    Citation: BMC Genomics 2017 18:419
    Content type: Research article Published on:

  24. An emerging field in biomedical research is focusing on the roles of aquaporin water channels in parasites that cause debilitating or lethal diseases to their vertebrate hosts. The primary vectorial agents are...

    Authors: Jon Anders Stavang, Francois Chauvigné, Heidi Kongshaug, Joan Cerdà, Frank Nilsen and Roderick Nigel Finn
    Citation: BMC Genomics 2015 16:618
    Content type: Research article Published on:

  25. Mammary gland development is a critical process in mammals, crucial for their reproductive success and offspring nourishment. However, the functional roles of key candidate genes associated with teat number, i...

    Authors: Xiaoli Guo, Chengcheng Zhao, Ruifei Yang, Yuzhe Wang and Xiaoxiang Hu
    Citation: BMC Genomics 2024 25:494
    Content type: Research Published on:

  26. The candidate genus “Methylacidiphilum” comprises thermoacidophilic aerobic methane oxidizers belonging to the Verrucomicrobia phylum. These are the first described non-proteobacterial aerobic methane oxidizer...

    Authors: Thomas Kruse, Chandini Murarilal Ratnadevi, Helge-André Erikstad and Nils-Kåre Birkeland
    Citation: BMC Genomics 2019 20:642
    Content type: Research article Published on:

  27. Copy number variants (CNVs) are a class of structural variants (SVs) and are defined as fragments of DNA that are present at variable copy number in comparison with a reference genome. Recent advances in bioin...

    Authors: Jacob L. Steenwyk, John S. Soghigian, John R. Perfect and John G. Gibbons
    Citation: BMC Genomics 2016 17:700
    Content type: Research article Published on:

  28. Salmonella is a widely distributed foodborne pathogen that causes tens of millions of salmonellosis cases globally every year. While the genomic diversity of Salmonella is increasingly well studied, our knowledge...

    Authors: Andrea I Moreno Switt, Renato H Orsi, Henk C den Bakker, Kitiya Vongkamjan, Craig Altier and Martin Wiedmann
    Citation: BMC Genomics 2013 14:481
    Content type: Research article Published on:

  29. Ketamine ester analogs, SN 35210 and SN 35563, demonstrate different pharmacological profiles to ketamine in animal models. Both confer hypnosis with predictably rapid offset yet, paradoxically, SN35563 induce...

    Authors: Gregory M. Jacobson, Logan J. Voss, Anica Klockars, Steve Bird, Ivo Dimitrov, William A. Denny, Pawel K. Olszewski, James W. Sleigh and Martyn G. Harvey
    Citation: BMC Genomics 2019 20:281
    Content type: Research article Published on:

  32. The Nile tilapia (Oreochromis niloticus) is the second most farmed fish species worldwide. It is also an important model for studies of fish physiology, particularly because of its broad tolerance to an array of ...

    Authors: Richard Guyon, Michaelle Rakotomanga, Naoual Azzouzi, Jean Pierre Coutanceau, Celine Bonillo, Helena D’Cotta, Elodie Pepey, Lucile Soler, Marguerite Rodier-Goud, Angelique D’Hont, Matthew A Conte, Nikkie EM van Bers, David J Penman, Christophe Hitte, Richard PMA Crooijmans, Thomas D Kocher…
    Citation: BMC Genomics 2012 13:222
    Content type: Research article Published on:

  33. Tuber starch and steroidal glycoalkaloid (SGA)-related traits have been consistently prioritized in potato breeding, while allelic variation pattern of genes that underlie these traits is less explored.

    Authors: Hongbo Li, Matthijs Brouwer, Elena Del Pup, Natascha van Lieshout, Richard Finkers, Christian W. B. Bachem and Richard G. F. Visser
    Citation: BMC Genomics 2024 25:274
    Content type: Research Published on:

  34. RNA editing by ADAR (adenosine deaminase acting on RNA) proteins is a form of transcriptional regulation that is widespread among humans and other primates. Based on high-throughput scans used to identify puta...

    Authors: Scott A. Funkhouser, Juan P. Steibel, Ronald O. Bates, Nancy E. Raney, Darius Schenk and Catherine W. Ernst
    Citation: BMC Genomics 2017 18:360
    Content type: Research article Published on:

  35. Aegilops variabilis No.1 is highly resistant to cereal cyst nematode (CCN). However, a lack of genomic information has restricted studies on CCN resistance genes in Ae. variabilis and has limited genetic applicat...

    Authors: De-Lin Xu, Hai Long, Jun-Jun Liang, Jie Zhang, Xin Chen, Jing-Liang Li, Zhi-Fen Pan, Guang-Bing Deng and Mao-Qun Yu
    Citation: BMC Genomics 2012 13:133
    Content type: Research article Published on:

  36. There are over a half a million copies of L1 retroelements in the human genome which are responsible for as much as 0.5% of new human genetic diseases. Most new L1 inserts arise from young source elements that...

    Authors: Vincent A Streva, Vallmer E Jordan, Sara Linker, Dale J Hedges, Mark A Batzer and Prescott L Deininger
    Citation: BMC Genomics 2015 16:220
    Content type: Methodology article Published on:

  37. Genome-wide association studies show that most human traits and diseases are caused by a combination of environmental and genetic causes, with each one of these having a relatively small effect. In contrast, m...

    Authors: Miguel Angel Varela
    Citation: BMC Genomics 2015 16:530
    Content type: Research article Published on:

  38. Two species of wild silkworms, the Chinese oak silkworm (Antheraea pernyi) and the castor silkworm Philosamia cynthia ricini, can acquire a serious disease caused by Nucleopolyhedrin Viruses (NPVs) (known as Anpe...

    Authors: Heying Qian, Yuehua Zhang, Yejun Wu, Pingiang Sun, Shanying Zhu, Xijie Guo, Kun Gao, Anying Xu and Wenbing Wang
    Citation: BMC Genomics 2013 14:115
    Content type: Research article Published on:

  39. Stink bugs are an emerging threat to crop security in many parts of the globe, but there are few genetic resources available to study their physiology at a molecular level. This is especially true for tissues ...

    Authors: Shane Denecke, Panagiotis Ioannidis, Benjamin Buer, Aris Ilias, Vassilis Douris, Pantelis Topalis, Ralf Nauen, Sven Geibel and John Vontas
    Citation: BMC Genomics 2020 21:129
    Content type: Research article Published on:

  40. Sequencing-based large screening of RNA-protein and RNA-RNA interactions has enabled the mechanistic study of post-transcriptional RNA processing and sorting, including exosome-mediated RNA secretion. The down...

    Authors: Tian Gao, Jiang Shu and Juan Cui
    Citation: BMC Genomics 2018 19:146
    Content type: Research article Published on:

  41. The collection of circRNAs mostly focused on their sequence composition such as protein/miRNA binding motif, and/or regulatory elements such as internal ribosome entry site. However, less attention was paid to...

    Authors: Ya-Chi Lin, Yun-Chin Wang, Yueh-Chun Lee, Hui-Hsuan Lin, Kai-Li Chang, Yu-Chieh Tai and Kuei-Yang Hsiao
    Citation: BMC Genomics 2022 22(Suppl 5):921
    Content type: Software Published on:

    This article is part of a Supplement: Volume 22 Supplement 5

  42. Do miRNAs contribute to specify the germ-band type and the body structure in the insect embryo? Our goal was to address that issue by studying the changes in miRNA expression along the ontogeny of the German c...

    Authors: Guillem Ylla, Maria-Dolors Piulachs and Xavier Belles
    Citation: BMC Genomics 2017 18:774
    Content type: Research article Published on:

  43. Pinus is the largest genus of Pinaceae and the most primitive group of modern genera. Pines have become the focus of many molecular evolution studies because of their wide use and ecological significance. However...

    Authors: Qijing Xia, Hongbin Zhang, Dong Lv, Yousry A. El-Kassaby and Wei Li
    Citation: BMC Genomics 2023 24:346
    Content type: Research Published on:

  44. The mammary gland is a unique organ for milk synthesis, secretion and storage, and it undergoes cyclical processes of development, differentiation, lactation and degeneration. At different developmental period...

    Authors: Zhibin Ji, Tianle Chao, Zhaohua Liu, Lei Hou, Jin Wang, Aili Wang, Jie Zhou, Rong Xuan, Guizhi Wang and Jianmin Wang
    Citation: BMC Genomics 2020 21:254
    Content type: Research article Published on:

  46. The plant cysteine-rich receptor-like kinases (CRKs) are a large family having multiple roles, including defense responses under both biotic and abiotic stress. However, the CRK family in cucumbers (Cucumis sativ...

    Authors: Satyabrata Nanda, Priyadarshini Rout, Ikram Ullah, Swapna Rani Nag, Velagala Veerraghava Reddy, Gagan Kumar, Ritesh Kumar, Shuilian He and Hongzhi Wu
    Citation: BMC Genomics 2023 24:219
    Content type: Research Published on:

  47. Cattle breeding populations are susceptible to the propagation of recessive diseases. Individual sires generate tens of thousands of progeny via artificial insemination. The frequency of deleterious alleles carri...

    Authors: Hubert Pausch, Hermann Schwarzenbacher, Johann Burgstaller, Krzysztof Flisikowski, Christine Wurmser, Sandra Jansen, Simone Jung, Angelika Schnieke, Thomas Wittek and Ruedi Fries
    Citation: BMC Genomics 2015 16:312
    Content type: Research article Published on:

  50. Pedunculate oak (Quercus robur L.), an important forest tree in temperate ecosystems, displays an endogenous rhythmic growth pattern, characterized by alternating shoot and root growth flushes paralleled by oscil...

    Authors: Hazel R. Maboreke, Lasse Feldhahn, Markus Bönn, Mika T. Tarkka, Francois Buscot, Sylvie Herrmann, Ralph Menzel and Liliane Ruess
    Citation: BMC Genomics 2016 17:627
    Content type: Research article Published on:

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