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  1. Lentinula edodes (Berk.) is the second most productive mushroom in the world. It contains compounds effective for antiviral, antitumor, antioxidant and immune regulation. Although genomes have previously been re...

    Authors: Hailong Yu, Lujun Zhang, Xiaodong Shang, Bing Peng, Yu Li, Shijun Xiao, Qi Tan and Yongping Fu
    Citation: BMC Genomics 2022 23:120
    Content type: Research Published on:

  3. Nucleotide-binding and leucine-rich repeat (NLR) genes have attracted wide attention due to their crucial role in protecting plants from pathogens. SMRT-RenSeq, combining PacBio sequencing after resistance gen...

    Authors: Zhenpu Huang, Fangyuan Qiao, Boming Yang, Jiaqian Liu, Yangqi Liu, Brande B. H. Wulff, Ping Hu, Zengshuai Lv, Ruiqi Zhang, Peidu Chen, Liping Xing and Aizhong Cao
    Citation: BMC Genomics 2022 23:118
    Content type: Research Published on:

  4. DNA methylation has an important role in intergenerational inheritance. An increasing number of studies have reported evidence of germline inheritance of DNA methylation induced by nutritional signals in mamma...

    Authors: Takaya Saito, Paul Whatmore, John F. Taylor, Jorge M. O. Fernandes, Anne-Catrin Adam, Douglas R. Tocher, Marit Espe and Kaja H. Skjærven
    Citation: BMC Genomics 2022 23:115
    Content type: Research article Published on:

  5. Meiotic recombination plays an important role in reproduction and evolution. The individual global recombination rate (GRR), measured as the number of crossovers (CO) per gametes, is a complex trait that has b...

    Authors: N. K. Kadri, J. Zhang, C. Oget-Ebrad, Y. Wang, C. Couldrey, R. Spelman, C. Charlier, M. Georges and T. Druet
    Citation: BMC Genomics 2022 23:114
    Content type: Research Published on:

  6. As the major source of sugar in moderate climates, sugar-producing beets (Beta vulgaris subsp. vulgaris) have a high economic value. However, the low genetic diversity within cultivated beets requires introductio...

    Authors: Katharina Sielemann, Boas Pucker, Nicola Schmidt, Prisca Viehöver, Bernd Weisshaar, Tony Heitkam and Daniela Holtgräwe
    Citation: BMC Genomics 2022 23:113
    Content type: Research Published on:

  7. Obesity has been recognized as a worldwide growing problem, producing many pathologies including the promotion of “proinflammatory state.” The etiology of human obesity is still only partially understood; howe...

    Authors: Ewelina Maculewicz, Bożena Antkowiak, Oktawiusz Antkowiak, Anna Borecka, Andrzej Mastalerz, Agata Leońska-Duniec, Kinga Humińska-Lisowska, Monika Michałowska-Sawczyn, Aleksandra Garbacz, Katarzyna Lorenz, Ewa Szarska, Łukasz Dziuda, Anna Cywińska and Paweł Cięszczyk
    Citation: BMC Genomics 2022 23:112
    Content type: Research Published on:

  8. Gamma-irradiated mutants of Triticum aestivum L., hexaploid wheat, provide novel and agriculturally important traits and are used as breeding materials. However, the identification of causative genomic regions of...

    Authors: Shoya Komura, Hironobu Jinno, Tatsuya Sonoda, Youko Oono, Hirokazu Handa, Shigeo Takumi, Kentaro Yoshida and Fuminori Kobayashi
    Citation: BMC Genomics 2022 23:111
    Content type: Research Published on:

  10. Seed germination is a series of ordered physiological and morphogenetic processes and a critical stage in plant life cycle. Tamarix hispida is one of the most salt-tolerant plant species; however, its seed germin...

    Authors: Xin’an Pang, Jiangtao Suo, Shuo Liu, Jindong Xu, Tian’ge Yang, Niyan Xiang, Yue Wu, Bojie Lu, Rui Qin, Hong Liu and Jialing Yao
    Citation: BMC Genomics 2022 23:109
    Content type: Research Published on:

  14. The epigenetic modifications play important regulatory roles in tissue development, maintenance of physiological functions and pathological process. RNA methylations, including newly identified m1A, m5C, m6A a...

    Authors: Wei Li, Xiaoyu Li, Xunjie Ma, Wei Xiao and Jingjing Zhang
    Citation: BMC Genomics 2022 23:105
    Content type: Research article Published on:

  15. Genetic markers like the nuclear ribosomal RNA (rRNA) genes, internal transcribed spacer regions, mitochondrial protein-coding genes, and genomes have been utilized for molecular identification of parasitic tr...

    Authors: Abigail Hui En Chan, Naowarat Saralamba, Sompob Saralamba, Jiraporn Ruangsittichai and Urusa Thaenkham
    Citation: BMC Genomics 2022 23:104
    Content type: Research article Published on:

  17. Very little is known about the etiology of personality and psychiatric disorders. Because the core neurobiology of many such traits is evolutionarily conserved, dogs present a powerful model. We previously rep...

    Authors: Isain Zapata, M. Leanne Lilly, Meghan E. Herron, James A. Serpell and Carlos E. Alvarez
    Citation: BMC Genomics 2022 23:102
    Content type: Research Published on:

  18. Pochonia chlamydosporia is an endophytic fungus used for nematode biocontrol that employs its cellular and molecular machinery to degrade the nematode egg-shell. Chitosanases, among other enzymes, are involved in...

    Authors: Christine Sambles, Marta Suarez-Fernandez, Federico Lopez-Moya, Luis Vicente Lopez-Llorca and David J. Studholme
    Citation: BMC Genomics 2022 23:101
    Content type: Research Published on:

  19. Previous reports have shown that soil salinity is a growing threat to cowpea production, and thus the need for breeding salt-tolerant cowpea cultivars. A total of 234 Multi-Parent Advanced Generation Inter-Cro...

    Authors: Waltram Ravelombola, Ainong Shi, Bao-Lam Huynh, Jun Qin, Haizheng Xiong, Aurora Manley, Lingdi Dong, Dotun Olaoye, Gehendra Bhattarai, Bazgha Zia, Huda Alshaya and Ibtisam Alatawi
    Citation: BMC Genomics 2022 23:100
    Content type: Research Published on:

  20. Most dementia disorders have a clear genetic background and a number of disease genes have been identified. Mutations in the tau gene (MAPT) lead to frontotemporal dementia (FTD), whereas mutations in the genes f...

    Authors: María Pagnon de la Vega, Carl Näslund, RoseMarie Brundin, Lars Lannfelt, Malin Löwenmark, Lena Kilander, Martin Ingelsson and Vilmantas Giedraitis
    Citation: BMC Genomics 2022 23:99
    Content type: Research Published on:

  21. Mixed models are used to correct for confounding due to population stratification and hidden relatedness in genome-wide association studies. This class of models includes linear mixed models and generalized li...

    Authors: Maryam Onifade, Marie-Hélène Roy-Gagnon, Marie-Élise Parent and Kelly M. Burkett
    Citation: BMC Genomics 2022 23:98
    Content type: Research article Published on:

  22. RNA-seq is being increasingly adopted for gene expression studies in a panoply of non-model organisms, with applications spanning the fields of agriculture, aquaculture, ecology, and environment. For organisms...

    Authors: Anish M.S. Shrestha, Joyce Emlyn B. Guiao and Kyle Christian R. Santiago
    Citation: BMC Genomics 2022 23:97
    Content type: Software Published on:

  23. Mitogen-activated protein kinases (MAPKs) plays essential roles in the development, hormone regulation and abiotic stress response of plants. Nevertheless, a comprehensive study on MAPK family members has thus...

    Authors: Yingjun Yao, Haixia Zhao, Lei Sun, Wenjing Wu, Chenglei Li and Qi Wu
    Citation: BMC Genomics 2022 23:96
    Content type: Research Published on:

  24. Leaf angle is an important plant architecture trait, affecting plant density, light interception efficiency, photosynthetic rate, and yield. The “smart canopy” model proposes more vertical leaves in the top pl...

    Authors: Martha I. Natukunda, Maria B. Mantilla-Perez, Michelle A. Graham, Peng Liu and Maria G. Salas-Fernandez
    Citation: BMC Genomics 2022 23:95
    Content type: Research Published on:

  25. The broad application of high-resolution chromosome detection technology in prenatal diagnosis has identified copy number loss (CNL) involving autosomal dominant (AD) genes in certain fetuses. Exon sequencing ...

    Authors: Lin Chen, Li Wang, Daishu Yin, Feng Tang, Yang Zeng, Hongmei Zhu and Jing Wang
    Citation: BMC Genomics 2022 23:94
    Content type: Research Published on:

  26. The formation and functioning of muscles are fundamental aspects of animal biology, and the evolution of ‘muscle genes’ is central to our understanding of this tissue. Feeding-fasting-refeeding experiments hav...

    Authors: Madeleine E. Aase-Remedios, Clara Coll-Lladó and David E. K. Ferrier
    Citation: BMC Genomics 2022 23:93
    Content type: Research Published on:

  27. Novel commercial kits for whole genome library preparation for next-generation sequencing on Illumina platforms promise shorter workflows, lower inputs and cost savings. Time savings are achieved by employing ...

    Authors: Teodora Ribarska, Pål Marius Bjørnstad, Arvind Y. M. Sundaram and Gregor D. Gilfillan
    Citation: BMC Genomics 2022 23:92
    Content type: Research Published on:

  28. In Tibet, the two most important breeds are Tibetan chicken and Lhasa white chicken, and the duo exhibit specific adaptations to the high altitude thereby supplying proteins for humans living in the plateau. T...

    Authors: Jingwei Yuan, Shijun Li, Zheya Sheng, Meikun Zhang, Xuming Liu, Zhengdong Yuan, Ning Yang and Jilan Chen
    Citation: BMC Genomics 2022 23:91
    Content type: Research Published on:

  29. Members of the genus Novius Mulsant, 1846 (= Rodolia Mulsant, 1850) (Coleoptera, Coccinellidae), play important roles in the biological control of cotton cushion scale pests, especially those belonging to Icerya....

    Authors: Xue-Fei Tang, Yu-Hao Huang, Hao-Sen Li, Pei-Tao Chen, Huan-Ying Yang, Yuan-Sen Liang, Xue-Yong Du, Zhen-Hua Liu, En-Feng Li, Yu-Chen Yang and Hong Pang
    Citation: BMC Genomics 2022 23:90
    Content type: Research Published on:

  30. Three-amino-loop-extension (TALE) superfamily genes are widely present in plants and function directly in plant growth and development and abiotic stress response. Although TALE genes have been studied in many pl...

    Authors: Yuxuan Han, Lili Zhang, Luyu Yan, Xinxin Xiong, Wenjing Wang, Xiao-Hong Zhang and Dong-Hong Min
    Citation: BMC Genomics 2022 23:89
    Content type: Research Published on:

  31. Mobile colistin resistance like gene (mcr-like gene) is a new type of polymyxin resistance gene that can be horizontally transferred in the Enterobacteriaceae. This has brought great challenges to the treatment o...

    Authors: Zhien He, Yongqiang Yang, Wei Li, Xiaoling Ma, Changfeng Zhang, Jingxiang Zhang, Baolin Sun, Tao Ding and Guo-bao Tian
    Citation: BMC Genomics 2022 23:88
    Content type: Research article Published on:

  32. Genomic DNA has been shaped by mutational processes through evolution. The cellular machinery for error correction and repair has left its marks in the nucleotide composition along with structural and function...

    Authors: Yuhu Liang, Christian Grønbæk, Piero Fariselli and Anders Krogh
    Citation: BMC Genomics 2022 23:87
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2022 23:356

  33. Panax notoginseng (Burk.) F. H. Chen (PN) belonging to the genus Panax of family Araliaceae is widely used in traditional Chinese medicine to treat various diseases. PN taproot, as the most vital organ for the ac...

    Authors: Lifang Yang, Hanye Wang, Panpan Wang, Mingju Gao, Luqi Huang, Xiuming Cui and Yuan Liu
    Citation: BMC Genomics 2022 23:86
    Content type: Research Published on:

  35. The genus Tulotis has been classified into the genus Platanthera in the present taxonomic studies since the morphological characteristics of this genus is very similar to that of Platanthera. Platanthera ussurien...

    Authors: Chenyang Han, Rui Ding, Xiaoyan Zong, Lijie Zhang, Xuhui Chen and Bo Qu
    Citation: BMC Genomics 2022 23:84
    Content type: Research Published on:

  36. Ziziphus hajarensis is an endemic plant species well-distributed in the Western Hajar mountains of Oman. Despite its potential medicinal uses, little is known regarding its genomic architecture, phylogenetic posi...

    Authors: Sajjad Asaf, Waqar Ahmad, Ahmed Al-Harrasi and Abdul Latif Khan
    Citation: BMC Genomics 2022 23:83
    Content type: Research Published on:

  37. The endometrium is a heterogeneous tissue composed of luminal epithelial (LE), glandular epithelial (GE), and stromal cells (ST), experiencing progesterone regulated dynamic changes during the estrous cycle. I...

    Authors: Gonçalo Pereira, Yongzhi Guo, Elisabete Silva, Claudia Bevilacqua, Gilles Charpigny, Luís Lopes-da-Costa and Patrice Humblot
    Citation: BMC Genomics 2022 23:82
    Content type: Research Published on:

  40. Authors: David J. Wright, Nicola A. L. Hall, Naomi Irish, Angela L. Man, Will Glynn, Arne Mould, Alejandro De Los Angeles, Emily Angiolini, David Swarbreck, Karim Gharbi, Elizabeth M. Tunbridge and Wilfried Haerty
    Citation: BMC Genomics 2022 23:79
    Content type: Correction Published on:

    The original article was published in BMC Genomics 2022 23:42

  41. Transcriptional regulation is primarily mediated by the binding of factors to non-coding regions in DNA. Identification of these binding regions enhances understanding of tissue formation and potentially facil...

    Authors: Dominic Maderazo, Jennifer A. Flegg, Manjula Algama, Mirana Ramialison and Jonathan Keith
    Citation: BMC Genomics 2022 23:78
    Content type: Methodology article Published on:

  42. Antibiotic resistance is a growing global health concern prompting researchers to seek alternatives to conventional antibiotics. Antimicrobial peptides (AMPs) are attracting attention again as therapeutic agen...

    Authors: Chenkai Li, Darcy Sutherland, S. Austin Hammond, Chen Yang, Figali Taho, Lauren Bergman, Simon Houston, René L. Warren, Titus Wong, Linda M. N. Hoang, Caroline E. Cameron, Caren C. Helbing and Inanc Birol
    Citation: BMC Genomics 2022 23:77
    Content type: Research article Published on:

    The Data Note to this article has been published in BMC Research Notes 2023 16:11

  43. Leeches are classic annelids that have a huge diversity and are closely related to people, especially medicinal leeches. Medicinal leeches have been widely utilized in medicine based on the pharmacological act...

    Authors: Lei Tong, Shao-Xing Dai, De-Jun Kong, Peng-Peng Yang, Xin Tong, Xiang-Rong Tong, Xiao-Xu Bi, Yuan Su, Yu-Qi Zhao and Zi-Chao Liu
    Citation: BMC Genomics 2022 23:76
    Content type: Research article Published on:

  44. Caterpillars from the insect order Lepidoptera are some of the most widespread and destructive agricultural pests. Most of their impact is at the larval stage, where the midgut epithelium mediates the digestio...

    Authors: Panagiotis Ioannidis, Benjamin Buer, Aris Ilias, Sofia Kaforou, Michalis Aivaliotis, Georgia Orfanoudaki, Vassilis Douris, Sven Geibel, John Vontas and Shane Denecke
    Citation: BMC Genomics 2022 23:75
    Content type: Research Published on:

  45. Cattle production is dependent upon fertility because it results in producing offspring to offset production costs. A number of semen attributes are believed to affect fertility and are frequently measured as ...

    Authors: M. L. Butler, A. R. Hartman, J. M. Bormann, R. L. Weaber, D. M. Grieger and M. M. Rolf
    Citation: BMC Genomics 2022 23:74
    Content type: Research Published on:

  46. Bread wheat (Triticum aestivum) is an important staple cereal grain worldwide. The ever-increasing environmental stress makes it very important to mine stress-resistant genes for wheat breeding programs. Therefor...

    Authors: Yongchao Hao, Ming Hao, Yingjie Cui, Lingrang Kong and Hongwei Wang
    Citation: BMC Genomics 2022 23:73
    Content type: Research Published on:

  47. Klebsiella pneumoniae are ubiquitous bacteria and recognized multidrug-resistant opportunistic pathogens that can be released into the environment, mainly through sewage, where they can survive even after wastewa...

    Authors: Jaqueline Rocha, Catarina Ferreira, Dalila Mil-Homens, Antonio Busquets, Arsénio M. Fialho, Isabel Henriques, Margarita Gomila and Célia M. Manaia
    Citation: BMC Genomics 2022 23:72
    Content type: Research Published on:

  48. Melampsora spp. rusts are the greatest pathogen threat to shrub willow (Salix spp.) bioenergy crops. Genetic resistance is key to limit the effects of these foliar diseases on host response and biomass yield, ho...

    Authors: Dustin G. Wilkerson, Chase R. Crowell, Craig H. Carlson, Patrick W. McMullen, Christine D. Smart and Lawrence B. Smart
    Citation: BMC Genomics 2022 23:71
    Content type: Research Published on:

  49. Recent studies highlighted the biosynthetic potential of nocardiae to produce diverse novel natural products comparable to that of Streptomyces, thereby making them an attractive source of new drug leads. Many of...

    Authors: Imen Nouioui, Sung-min Ha, Inwoo Baek, Jongsik Chun and Michael Goodfellow
    Citation: BMC Genomics 2022 23:70
    Content type: Research Published on:

  50. The gram-positive bacterium, Streptomyces avermitilis, holds industrial importance as the producer of avermectin, a widely used anthelmintic agent, and a heterologous expression host of secondary metabolite-biosy...

    Authors: Yongjae Lee, Namil Lee, Soonkyu Hwang, Woori Kim, Suhyung Cho, Bernhard O. Palsson and Byung-Kwan Cho
    Citation: BMC Genomics 2022 23:68
    Content type: Research Published on:

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BMC Genomics

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