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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 49 of 128

  1. Paspalum notatum exhibits both sexual and apomictic cytotypes and, thus, is considered a good model for studies of apomixis because it facilitates comparative approaches. In this work, transcriptome sequencing wa...

    Authors: Fernanda A. de Oliveira, Bianca B. Z. Vigna, Carla C. da Silva, Alessandra P. Fávero, Frederico P. de Matta, Ana L. S. Azevedo and Anete P. de Souza
    Citation: BMC Genomics 2020 21:78
    Content type: Research article Published on:

  2. Taraxacum kok-saghyz R. (Tks) is a promising alternative species to Hevea brasiliensis for production of high quality natural rubber (NR). A comparative transcriptome analysis of plants with differential producti...

    Authors: Francesco Panara, Loredana Lopez, Loretta Daddiego, Elio Fantini, Paolo Facella and Gaetano Perrotta
    Citation: BMC Genomics 2018 19:875
    Content type: Research article Published on:

  3. Bacillus thuringiensis var. israelensis (Bti) is a natural larval mosquito pathogen producing pore-forming toxins targeting the midgut of Diptera larvae. It is used worldwide for mosquito control. Resistance mech...

    Authors: Guillaume Tetreau, Krishnareddy Bayyareddy, Christopher M Jones, Renaud Stalinski, Muhammad A Riaz, Margot Paris, Jean-Philippe David, Michael J Adang and Laurence Després
    Citation: BMC Genomics 2012 13:248
    Content type: Research article Published on:

  4. Older adults are more prone to develop systemic dehydration. Systemic dehydration has implications for vocal fold biology by affecting gene and protein expression. The objective of this study was to quantify v...

    Authors: Naila C. do Nascimento, Taylor W. Bailey, Andrea P. Santos, Chenwei Duan, Rodrigo Mohallem, Jackeline Franco, Uma K. Aryal, Jun Xie, Abigail Cox and M. Preeti Sivasankar
    Citation: BMC Genomics 2022 23:762
    Content type: Research Published on:

  5. The peroxisome proliferator-activated receptor alpha (PPARα) is a ligand-activated transcription factor that regulates lipid catabolism and inflammation and is hepatocarcinogenic in rodents. It is presumed tha...

    Authors: Ewa Szalowska, Haftu A Tesfay, Sacha A F T van Hijum and Sander Kersten
    Citation: BMC Genomics 2014 15:1106
    Content type: Research article Published on:

  6. Isothiocyanates (ITCs) are degradation products of the plant secondary metabolites glucosinolates (GSLs) and are known to affect human health as well as plant herbivores and pathogens. To investigate the proce...

    Authors: Ralph Kissen, Anders Øverby, Per Winge and Atle M. Bones
    Citation: BMC Genomics 2016 17:740
    Content type: Research article Published on:

  7. Dormancy is widespread in both multicellular and unicellular organisms. Among diatoms, unicellular microalgae at the base of all aquatic food webs, several species produce dormant cells (spores or resting cell...

    Authors: Angela Pelusi, Luca Ambrosino, Marco Miralto, Maria Luisa Chiusano, Alessandra Rogato, Maria Immacolata Ferrante and Marina Montresor
    Citation: BMC Genomics 2023 24:106
    Content type: Research Published on:

  8. miRNA profiling performed in myogenic cells and biopsies from skeletal muscles has previously identified miRNAs involved in myogenesis.

    Authors: Petr Dmitriev, Ana Barat, Anna Polesskaya, Mary J O’Connell, Thomas Robert, Philippe Dessen, Thomas A Walsh, Vladimir Lazar, Ahmed Turki, Gilles Carnac, Dalila Laoudj-Chenivesse, Marc Lipinski and Yegor S Vassetzky
    Citation: BMC Genomics 2013 14:265
    Content type: Methodology article Published on:

  9. 3′untranslated regions (3′UTRs) are poorly understood portions of eukaryotic mRNAs essential for post-transcriptional gene regulation. Sequence elements in 3′UTRs can be target sites for regulatory molecules s...

    Authors: Kasuen Kotagama, Cody S. Babb, Justin M. Wolter, Ronan P. Murphy and Marco Mangone
    Citation: BMC Genomics 2015 16:1036
    Content type: Research article Published on:

  10. The transcriptional regulatory network is considered to be built from a set of circuit patterns called network motifs. Experimental studies have provided instances where a feedforward circuit (FFC) appears wit...

    Authors: Hisakazu Iwama, Koji Murao, Hitomi Imachi and Toshihiko Ishida
    Citation: BMC Genomics 2011 12:228
    Content type: Research article Published on:

  11. The pathogen Listeria (L.) monocytogenes is known to survive heat, cold, high pressure, and other extreme conditions. Although the response of this pathogen to pH, osmotic, temperature, and oxidative stress has b...

    Authors: Bahareh Nikparvar, Margarita Andreevskaya, Ilhan C. Duru, Florentina I. Bucur, Leontina Grigore-Gurgu, Daniela Borda, Anca I. Nicolau, Christian U. Riedel, Petri Auvinen and Nadav Bar
    Citation: BMC Genomics 2021 22:266
    Content type: Research article Published on:

  13. Alfalfa (Medicago sativa. L) is one of the best leguminous herbage in China and even in the world, with high nutritional and ecological value. However, one of the drawbacks of alfalfa is its sensitivity to dry co...

    Authors: Qian Ruan, Xiaoming Bai, Yizhen Wang, Xiaofang Zhang, Baoqiang Wang, Ying Zhao, Xiaolin Zhu and Xiaohong Wei
    Citation: BMC Genomics 2024 25:229
    Content type: Research Published on:

  14. Adult human fibroblasts grown in low oxygen and with FGF2 supplementation have the capacity to tip the healing outcome of skeletal muscle injury – by favoring regeneration response in vivo over scar formation. He...

    Authors: Olga Kashpur, David LaPointe, Sakthikumar Ambady, Elizabeth F Ryder and Tanja Dominko
    Citation: BMC Genomics 2013 14:656
    Content type: Research article Published on:

  15. Endurance exercise in horses requires adaptive processes involving physiological, biochemical, and cognitive-behavioral responses in an attempt to regain homeostasis. We hypothesized that the identification of...

    Authors: Núria Mach, Yuliaxis Ramayo-Caldas, Allison Clark, Marco Moroldo, Céline Robert, Eric Barrey, Jesús Maria López and Laurence Le Moyec
    Citation: BMC Genomics 2017 18:187
    Content type: Research article Published on:

  17. Carbonic anhydrase (CA) catalyzes the hydration of CO2 in the first biochemical step of C4 photosynthesis, and has been considered a potentially rate-limiting step when CO2 availability within a leaf is low. Prev...

    Authors: Allison R. Kolbe, Anthony J. Studer, Omar E. Cornejo and Asaph B. Cousins
    Citation: BMC Genomics 2019 20:138
    Content type: Research article Published on:

  18. The sequencing and analysis of ESTs is for now the only practical approach for large-scale gene discovery and annotation in conifers because their very large genomes are unlikely to be sequenced in the near fu...

    Authors: Nathalie Pavy, Charles Paule, Lee Parsons, John A Crow, Marie-Josee Morency, Janice Cooke, James E Johnson, Etienne Noumen, Carine Guillet-Claude, Yaron Butterfield, Sarah Barber, George Yang, Jerry Liu, Jeff Stott, Robert Kirkpatrick, Asim Siddiqui…
    Citation: BMC Genomics 2005 6:144
    Content type: Research article Published on:

  19. Parasitoid insects manipulate their hosts' physiology by injecting various factors into their host upon parasitization. Transcriptomic approaches provide a powerful approach to study insect host-parasitoid int...

    Authors: Kayvan Etebari, Robin W Palfreyman, David Schlipalius, Lars K Nielsen, Richard V Glatz and Sassan Asgari
    Citation: BMC Genomics 2011 12:446
    Content type: Research article Published on:

  20. In contrast to other agents able to induce apoptosis of cultured cells, Ca2+ ionophore A23187 was shown to elicit direct activation of intracellular signal(s). The phenotype of the cells derived from patients hav...

    Authors: Detlef Kozian, Valérie Proulle, Almut Nitsche, Marie Galitzine, Marie-Carmen Martinez, Beatrice Schumann, Dominique Meyer, Matthias Herrmann, Jean-Marie Freyssinet and Danièle Kerbiriou-Nabias
    Citation: BMC Genomics 2005 6:146
    Content type: Research article Published on:

  21. Transposable elements (TE) make up a large portion of many plant genomes and are playing innovative roles in genome evolution. Several TEs can contribute to gene regulation by influencing expression of nearby ...

    Authors: Jan Deneweth, Yves Van de Peer and Vanessa Vermeirssen
    Citation: BMC Genomics 2022 23:18
    Content type: Research Published on:

  22. Feed restriction occurs frequently during pig growth, either due to economic reasons or stressful environmental conditions. Local breeds are suggested to have better tolerance to periods of feed restriction. H...

    Authors: Nausicaa Poullet, Orianne Devarieux, David Beramice, Laurent Dantec, Yoann Félicité, Dalila Feuillet, Jean-Luc Gourdine and Jean-Christophe Bambou
    Citation: BMC Genomics 2023 24:292
    Content type: Research Published on:

  23. Thermosensitive genic male sterile (TGMS) lines and photoperiod-sensitive genic male sterile (PGMS) lines have been successfully used in hybridization to improve rice yields. However, the molecular mechanisms ...

    Authors: Yufang Pan, Qiaofeng Li, Zhizheng Wang, Yang Wang, Rui Ma, Lili Zhu, Guangcun He and Rongzhi Chen
    Citation: BMC Genomics 2014 15:1114
    Content type: Research article Published on:

  24. Bovine Respiratory Syncytial Virus (BRSV) is a cause of Bovine Respiratory Disease (BRD). DNA-based biomarkers contributing to BRD resistance are potentially present in non-protein-coding regulatory regions of...

    Authors: Dayle Johnston, JaeWoo Kim, Jeremy F. Taylor, Bernadette Earley, Matthew S. McCabe, Ken Lemon, Catherine Duffy, Michael McMenamy, S. Louise Cosby and Sinéad M. Waters
    Citation: BMC Genomics 2021 22:14
    Content type: Research article Published on:

  25. Genome-wide gene expression profiling and detailed physiological investigation were used for understanding the molecular mechanism and physiological response of Gossypium herbaceum, which governs the adaptability...

    Authors: Alok Ranjan, Deepti Nigam, Mehar H Asif, Ruchi Singh, Sanjay Ranjan, Shrikant Mantri, Neha Pandey, Ila Trivedi, Krishan Mohan Rai, Satya N Jena, Bhupendra Koul, Rakesh Tuli, Uday V Pathre and Samir V Sawant
    Citation: BMC Genomics 2012 13:94
    Content type: Research article Published on:

  26. Important regulation occurs at the level of transcription in Plasmodium falciparum and growing evidence suggests that these apicomplexan parasites have complex regulatory networks. Recent studies implicate long n...

    Authors: Johanna Hoshizaki, Sophie H. Adjalley, Vandana Thathy, Kim Judge, Matthew Berriman, Adam J. Reid and Marcus C. S. Lee
    Citation: BMC Genomics 2022 23:780
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2023 24:189

  27. Bacteroides fragilis is a Gram-negative anaerobe that is normally a human gut commensal; it comprises a small percentage of the gut Bacteroides but is the most frequently isolated Bacteroides from human infection...

    Authors: Yaligara Veeranagouda, Fasahath Husain, Elizabeth L Tenorio and Hannah M Wexler
    Citation: BMC Genomics 2014 15:429
    Content type: Research article Published on:

  28. Fusarium head blight (FHB) is a devastating disease of wheat worldwide. Resistance to FHB is quantitatively controlled by the combined effects of many small to medium effect QTL. Flowering traits, especially t...

    Authors: Maria Buerstmayr, Christian Wagner, Tetyana Nosenko, Jimmy Omony, Barbara Steiner, Thomas Nussbaumer, Klaus F. X. Mayer and Hermann Buerstmayr
    Citation: BMC Genomics 2021 22:470
    Content type: Research Published on:

  29. Extravillous trophoblast cell (EVT) differentiation and its communication with maternal decidua especially the leading immune cell type natural killer (NK) cell are critical events for placentation. However, a...

    Authors: Bai-Mei Zhuang, Dan-Dan Cao, Tian-Xi Li, Xiao-Feng Liu, Min-Min Lyu, Si-Dong Wang, Xin-Yuan Cui, Li Wang, Xiao-Lin Chen, Xiao-Li Lin, Cheuk-Lun Lee, Philip C.N. Chiu, William S.B. Yeung and Yuan-Qing Yao
    Citation: BMC Genomics 2023 24:618
    Content type: Research Published on:

  30. Tuberculosis (TB) continues to cause a high toll of disease and death among children worldwide. The diagnosis of childhood TB is challenged by the paucibacillary nature of the disease and the difficulties in o...

    Authors: Lilly M Verhagen, Aldert Zomer, Mailis Maes, Julian A Villalba, Berenice del Nogal, Marc Eleveld, Sacha AFT van Hijum, Jacobus H de Waard and Peter WM Hermans
    Citation: BMC Genomics 2013 14:74
    Content type: Research article Published on:

  32. Rapid changes in the expression of many messenger RNA (mRNA) species follow exposure of cells to ionizing radiation. One of the hypothetical mechanisms of this response may include microRNA (miRNA) regulation,...

    Authors: Marzena Mura, Roman Jaksik, Anna Lalik, Krzysztof Biernacki, Marek Kimmel, Joanna Rzeszowska-Wolny and Krzysztof Fujarewicz
    Citation: BMC Genomics 2019 20:114
    Content type: Research article Published on:

  33. Changing the energy and nutrient source for growing animals may be an effective way of limiting adipose tissue expansion, a response which may depend on the genetic background of the animals. This study aims t...

    Authors: Florence Gondret, Annie Vincent, Magalie Houée-Bigot, Anne Siegel, Sandrine Lagarrigue, Isabelle Louveau and David Causeur
    Citation: BMC Genomics 2016 17:120
    Content type: Research article Published on:

  34. MicroRNAs (miRNAs) have recently been shown to play important roles in development of the immune system and in fine-tuning of immune responses. Human miR-146 family members are known as inflammation-inducible ...

    Authors: Anita Ordas, Zakia Kanwal, Valesca Lindenberg, Julien Rougeot, Matyas Mink, Herman P Spaink and Annemarie H Meijer
    Citation: BMC Genomics 2013 14:696
    Content type: Research article Published on:

  35. Myxococcus xanthus is a Gram negative bacterium that can differentiate into metabolically quiescent, environmentally resistant spores. Little is known about the mechanisms involved in differentiation in part beca...

    Authors: Frank-Dietrich Müller, Anke Treuner-Lange, Johann Heider, Stuart M Huntley and Penelope I Higgs
    Citation: BMC Genomics 2010 11:264
    Content type: Research article Published on:

  36. Trees such as Populus are planted extensively for reforestation and afforestation. However, their successful establishment greatly depends upon ambient environmental conditions and their relative resistance to ab...

    Authors: Fang He, Yu-Jie Shi, Qian Zhao, Kuang-Ji Zhao, Xing-Lei Cui, Liang-Hua Chen, Han-Bo Yang, Fan Zhang, Jia-Xuan Mi, Jin-Liang Huang and Xue-Qin Wan
    Citation: BMC Genomics 2021 22:731
    Content type: Research Published on:

  37. Because species-specific gene expression is driven by species-specific regulation, understanding the relationship between sequence and function of the regulatory regions in different species will help elucidat...

    Authors: Olgert Denas, Richard Sandstrom, Yong Cheng, Kathryn Beal, Javier Herrero, Ross C Hardison and James Taylor
    Citation: BMC Genomics 2015 16:87
    Content type: Research Published on:

  38. A small "sigma-like" protein, AfsS, pleiotropically regulates antibiotic biosynthesis in Streptomyces coelicolor. Overexpression of afsS in S. coelicolor and certain related species causes antibiotic stimulatory ...

    Authors: Wei Lian, Karthik P Jayapal, Salim Charaniya, Sarika Mehra, Frank Glod, Yun-Seung Kyung, David H Sherman and Wei-Shou Hu
    Citation: BMC Genomics 2008 9:56
    Content type: Research article Published on:

  39. In this study, we investigated the codon bias of twelve mitochondrial core protein coding genes (PCGs) in eight Pleurotus strains, two of which are from the same species. The results revealed that the codons of a...

    Authors: Wei Gao, Xiaodie Chen, Jing He, Ajia Sha, Yingyong Luo, Wenqi Xiao, Zhuang Xiong and Qiang Li
    Citation: BMC Genomics 2024 25:456
    Content type: Research Published on:

  40. Narrow-leafed lupin is an emerging crop of significance in agriculture, livestock feed and human health food. However, its susceptibility to various diseases is a major obstacle towards increased adoption. Sclero...

    Authors: Mahsa Mousavi-Derazmahalleh, Steven Chang, Geoff Thomas, Mark Derbyshire, Phillip E. Bayer, David Edwards, Matthew N. Nelson, William Erskine, Francisco J. Lopez-Ruiz, Jon Clements and James K. Hane
    Citation: BMC Genomics 2019 20:385
    Content type: Research article Published on:

  41. Filarial nematode parasites cause serious diseases such as elephantiasis and river blindness in humans, and heartworm infections in dogs. Third stage filarial larvae (L3) are a critical stage in the life cycle...

    Authors: Ben-Wen Li, Amy C Rush, Makedonka Mitreva, Yong Yin, David Spiro, Elodie Ghedin and Gary J Weil
    Citation: BMC Genomics 2009 10:267
    Content type: Research article Published on:

  42. Alternative splicing is an essential mechanism for increasing transcriptome and proteome diversity in eukaryotes. Particularly in multicellular eukaryotes, this mechanism is involved in the regulation of devel...

    Authors: Arash Kianianmomeni, Cheng Soon Ong, Gunnar Rätsch and Armin Hallmann
    Citation: BMC Genomics 2014 15:1117
    Content type: Research article Published on:

  43. In light of previous studies that profiled breed-specific traits or used genome-wide association studies to refine loci associated with characteristic morphological features in dogs, the field has gained treme...

    Authors: Zicheng Li, Zuoheng Wang, Zhiyuan Chen, Heidi Voegeli, Judith H. Lichtman, Peter Smith, Ju Liu, Andrew T. DeWan and Josephine Hoh
    Citation: BMC Genomics 2023 24:302
    Content type: Research Published on:

  44. Bacterial phenotype may be profoundly affected by the physical arrangement of their genes in the genome. The Gram-negative species Aggregatibacter actinomycetemcomitans is a major etiologic agent of human periodo...

    Authors: Weerayuth Kittichotirat, Roger Bumgarner and Casey Chen
    Citation: BMC Genomics 2010 11:489
    Content type: Research article Published on:

  45. The effect of osmolarity on cellular physiology has been subject of investigation in many different species. High osmolarity is of importance for biotechnological production processes, where high cell densitie...

    Authors: Martin Dragosits, Johannes Stadlmann, Alexandra Graf, Brigitte Gasser, Michael Maurer, Michael Sauer, David P Kreil, Friedrich Altmann and Diethard Mattanovich
    Citation: BMC Genomics 2010 11:207
    Content type: Research article Published on:

  46. Farmed and wild Atlantic salmon are exposed to many infectious and non-infectious challenges that can cause mortality when they enter the sea. Exercise before transfer promotes growth, health and survival in t...

    Authors: Nicholas A. Robinson, Gerrit Timmerhaus, Matthew Baranski, Øivind Andersen, Harald Takle and Aleksei Krasnov
    Citation: BMC Genomics 2017 18:971
    Content type: Research article Published on:

  47. Ticks represent a major health issue for humans and domesticated animals. Exploring the expression landscape of the tick’s central nervous system (CNS), known as the synganglion, would be an important step in ...

    Authors: Claude Rispe, Caroline Hervet, Nathalie de la Cotte, Romain Daveu, Karine Labadie, Benjamin Noel, Jean-Marc Aury, Steeve Thany, Emiliane Taillebois, Alison Cartereau, Anaïs Le Mauff, Claude L. Charvet, Clément Auger, Elise Courtot, Cédric Neveu and Olivier Plantard
    Citation: BMC Genomics 2022 23:463
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2022 23:502

  48. Pluripotent cells can be differentiated into many different cell types in vitro. Successful differentiation is guided in large part by epigenetic reprogramming and regulation of critical gene expression patter...

    Authors: Michelle Gonzales-Cope, Simone Sidoli, Natarajan V. Bhanu, Kyoung-Jae Won and Benjamin A. Garcia
    Citation: BMC Genomics 2016 17:95
    Content type: Research article Published on:

  49. The pentatricopeptide repeat (PPR) is a degenerate 35 amino acid motif that occurs in multiple tandem copies in members of a recently recognized eukaryotic gene family. Most analyzed eukaryotic genomes contain...

    Authors: Rachel Geddy and Gregory G Brown
    Citation: BMC Genomics 2007 8:130
    Content type: Research article Published on:

  50. As economical traits, food habits domestication can reduce production cost in aquaculture. However, the molecular mechanism underlying food habits domestication has remained elusive. Mandarin fish (Siniperca chua...

    Authors: Shan He, Jun-Jie You, Xu-Fang Liang, Zhi-Lu Zhang and Yan-Peng Zhang
    Citation: BMC Genomics 2021 22:129
    Content type: Research article Published on:

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BMC Genomics

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