Skip to main content

Articles

Page 1 of 333

  1. The transcriptome and metabolome dissection of the skeletal muscle of high- and low- growing individuals from a crossbred population of the indigenous Chongming white goat and the Boer goat were performed to d...

    Authors: Yuexia Lin, Lingwei Sun, Yuhua Lv, Rongrong Liao, Keqing Zhang, Jinyong Zhou, Shushan Zhang, Jiehuan Xu, Mengqian He, Caifeng Wu, Defu Zhang, Xiaohui Shen, Jianjun Dai and Jun Gao
    Citation: BMC Genomics 2024 25:443
    Content type: Research Published on:

  2. Genes containing the SET domain can catalyse histone lysine methylation, which in turn has the potential to cause changes to chromatin structure and regulation of the transcription of genes involved in diverse...

    Authors: Vithusan Suppiyar, Venkata Suresh Bonthala, Asis Shrestha, Stephanie Krey and Benjamin Stich
    Citation: BMC Genomics 2024 25:442
    Content type: Research Published on:

  3. Quorum sensing (QS) is a sophisticated cell-to-cell signalling mechanism that allows the coordination of important processes in microbial populations. The AI-1 and AI-2 autoinducer systems are among the best char...

    Authors: Iñigo de la Fuente, Saioa Manzano-Morales, David Sanz, Alicia Prieto and Jorge Barriuso
    Citation: BMC Genomics 2024 25:441
    Content type: Research Published on:

  4. Alzheimer's disease (AD) is a heritable neurodegenerative disease whose long asymptomatic phase makes the early diagnosis of it pivotal. Blood U-p53 has recently emerged as a superior predictive biomarker for ...

    Authors: Arash Yaghoobi and Seyed Amir Malekpour
    Citation: BMC Genomics 2024 25:440
    Content type: Research Published on:

  5. Chickpea is prone to many abiotic stresses such as heat, drought, salinity, etc. which cause severe loss in yield. Tolerance towards these stresses is quantitative in nature and many studies have been done to ...

    Authors: Sourav Panigrahi, Upendra Kumar, Sonu Swami, Yogita Singh, Priyanka Balyan, Krishna Pal singh, Om Parkash Dhankher, Rajeev K Varshney, Manish Roorkiwal, Khaled MA Amiri and Reyazul Rouf Mir
    Citation: BMC Genomics 2024 25:439
    Content type: Research Published on:

  6. Nutrient availability during early stages of development (embryogenesis and the first week post-hatch) can have long-term effects on physiological functions and bird metabolism. The embryo develops in a closed...

    Authors: Angélique Petit, Sophie Tesseraud, Anne Collin, Nathalie Couroussé, Cécile Berri, Elisabeth Le Bihan-Duval and Sonia Métayer-Coustard
    Citation: BMC Genomics 2024 25:438
    Content type: Research Published on:

  7. Liver transplantation is an effective treatment for liver failure. There is a large unmet demand, even as not all donated livers are transplanted. The clinical selection criteria for donor livers based on hist...

    Authors: Ankita Srivastava, Alexandra Manchel, John Waters, Manju Ambelil, Benjamin K. Barnhart, Jan B. Hoek, Ashesh P. Shah and Rajanikanth Vadigepalli
    Citation: BMC Genomics 2024 25:437
    Content type: Research Published on:

  8. Cassava mosaic disease (CMD), caused by Sri Lankan cassava mosaic virus (SLCMV) infection, has been identified as a major pernicious disease in Manihot esculenta Crantz (cassava) plantations. It is widespread in ...

    Authors: Somruthai Chaowongdee, Nattachai Vannatim, Srihunsa Malichan, Nattakorn Kuncharoen, Pumipat Tongyoo and Wanwisa Siriwan
    Citation: BMC Genomics 2024 25:436
    Content type: Research Published on:

  9. The oomycete Phytophthora cinnamomi is a devastating plant pathogen with a notably broad host range. It is the causal agent of Phytophthora root rot (PRR), arguably the most economically important yield-limiting ...

    Authors: Kayla A. Midgley, Noëlani van den Berg, Robert Backer and Velushka Swart
    Citation: BMC Genomics 2024 25:435
    Content type: Research Published on:

  11. The increasing burden of dengue virus on public health due to more explosive and frequent outbreaks highlights the need for improved surveillance and control. Genomic surveillance of dengue virus not only prov...

    Authors: Chantal B. F. Vogels, Verity Hill, Mallery I. Breban, Chrispin Chaguza, Lauren M. Paul, Afeez Sodeinde, Emma Taylor-Salmon, Isabel M. Ott, Mary E. Petrone, Dennis Dijk, Marcel Jonges, Matthijs R. A. Welkers, Timothy Locksmith, Yibo Dong, Namratha Tarigopula, Omer Tekin…
    Citation: BMC Genomics 2024 25:433
    Content type: Research Published on:

  13. Ophthalmic manifestations have recently been observed in acute and post-acute complications of COVID-19 caused by SARS-CoV-2 infection. Our precious study has shown that host RNA editing is linked to RNA viral...

    Authors: Yun-Yun Jin, Ya-Ping Liang, Wen-Hao Huang, Liang Guo, Li-Li Cheng, Tian-Tian Ran, Jin-Ping Yao, Lin Zhu and Jian-Huan Chen
    Citation: BMC Genomics 2024 25:431
    Content type: Research Published on:

  14. Although multiple chicken genomes have been assembled and annotated, the numbers of protein-coding genes in chicken genomes and their variation among breeds are still uncertain due to the low quality of these ...

    Authors: Siwen Wu, Tengfei Dou, Sisi Yuan, Shixiong Yan, Zhiqiang Xu, Yong Liu, Zonghui Jian, Jingying Zhao, Rouhan Zhao, Xiannian Zi, Dahai Gu, Lixian Liu, Qihua Li, Dong-Dong Wu, Junjing Jia, Changrong Ge…
    Citation: BMC Genomics 2024 25:430
    Content type: Research Published on:

  15. Expression quantitative trait loci (eQTL) studies aim to understand the influence of genetic variants on gene expression. The colocalization of eQTL mapping and GWAS strategy could help identify essential cand...

    Authors: Wentao Cai, Jian Hu, Yunsheng Zhang, Zhanbao Guo, Zhengkui Zhou and Shuisheng Hou
    Citation: BMC Genomics 2024 25:429
    Content type: Research Published on:

  16. Although many studies have been done to reveal artificial selection signatures in commercial and indigenous chickens, a limited number of genes have been linked to specific traits. To identify more trait-relat...

    Authors: Siwen Wu, Tengfei Dou, Kun Wang, Sisi Yuan, Shixiong Yan, Zhiqiang Xu, Yong Liu, Zonghui Jian, Jingying Zhao, Rouhan Zhao, Hao Wu, Dahai Gu, Lixian Liu, Qihua Li, Dong-Dong Wu, Changrong Ge…
    Citation: BMC Genomics 2024 25:428
    Content type: Research Published on:

  17. Current approaches to profile the single-cell transcriptomics of human pancreatic endocrine cells almost exclusively rely on freshly isolated islets. However, human islets are limited in availability. Furtherm...

    Authors: Gengqiang Xie, Maria Pilar Toledo, Xue Hu, Hyo Jeong Yong, Pamela Sandoval Sanchez, Chengyang Liu, Ali Naji, Jerome Irianto and Yue J. Wang
    Citation: BMC Genomics 2024 25:427
    Content type: Research Published on:

  18. In the beef industry, bull calves are usually castrated to improve flavor and meat quality; however, this can reduce their growth and slaughter performance. The gut microbiota is known to exert a significant i...

    Authors: Jinping Shi, Zemin Li, Li Jia, Yue Ma, Yongliang Huang, Pengjia He, Tao Ran, Wangjing Liu, Wangdong Zhang, Qiang Cheng, Zhao Zhang and Zhaomin Lei
    Citation: BMC Genomics 2024 25:426
    Content type: Research Published on:

  19. Purple non-heading Chinese cabbage [Brassica campestris (syn. Brassica rapa) ssp. chinensis] has become popular because of its richness in anthocyanin. However, anthocyanin only accumulates in the upper epidermis...

    Authors: Qian Zhou, Xinfeng Xu, Mengjie Li, Xiaoxue Yang, Meiyun Wang, Ying Li, Xilin Hou and Tongkun Liu
    Citation: BMC Genomics 2024 25:425
    Content type: Research Published on:

  20. Salinity impacts crop growth and productivity and lowers the activities of rhizosphere microbiota. The identification and utilization of habitat-specific salinity-adapted plant growth-promoting rhizobacteria (...

    Authors: V. S. Sunithakumari, Rahul R. Menon, Gayathri G. Suresh, Ramya Krishnan and N. Rameshkumar
    Citation: BMC Genomics 2024 25:424
    Content type: Research Published on:

  21. Single-cell clustering has played an important role in exploring the molecular mechanisms about cell differentiation and human diseases. Due to highly-stochastic transcriptomics data, accurate detection of cel...

    Authors: Wei Zhang, Ruochen Yu, Zeqi Xu, Junnan Li, Wenhao Gao, Mingfeng Jiang and Qi Dai
    Citation: BMC Genomics 2024 25:423
    Content type: Research Published on:

  22. Brasenia schreberi, a plant species traditionally utilized in Chinese medicine and cuisine, represents an early evolutionary stage among flowering plants (angiosperms). While the plastid genome of this species ha...

    Authors: Yuanyu Shan, Jingling Li, Xinmei Duan, Xue Zhang and Jie Yu
    Citation: BMC Genomics 2024 25:422
    Content type: Research Published on:

  23. Herpetospermum pedunculosum (Ser.) C. B. Clarke is a traditional Chinese herbal medicine that heavily relies on the lignans found in its dried ripe seeds (Herpetospermum caudigerum), which have antioxidant and h...

    Authors: Ziwei Zhu, Daihan Chen, Min Sun, Maotao Xiao, Peng Huang, Dongsheng Ren, Yixi Yang, Zhen Zhang, Qi Zhao and Rui Li
    Citation: BMC Genomics 2024 25:421
    Content type: Research Published on:

  24. Goats have achieved global prominence as essential livestock since their initial domestication, primarily owing to their remarkable adaptability to diverse environmental and production systems. Differential se...

    Authors: Weifeng Peng, Yiyuan Zhang, Lei Gao, Wanlu Shi, Zi Liu, Xinyu Guo, Yunxia Zhang, Bing Li, Guoyin Li, Jingya Cao and Mingsheng Yang
    Citation: BMC Genomics 2024 25:420
    Content type: Research Published on:

  25. The genus Mesorhizobium is shown by phylogenomics to be paraphyletic and forms part of a complex that includes the genera Aminobacter, Aquamicrobium, Pseudaminobacter and Tianweitania. The relationships for type ...

    Authors: Yan Li, Tingyan Guo, Liqin Sun, En-Tao Wang, J. Peter W. Young and Chang-Fu Tian
    Citation: BMC Genomics 2024 25:419
    Content type: Research Published on:

  26. Plant specialized (or secondary) metabolites (PSM), also known as phytochemicals, natural products, or plant constituents, play essential roles in interactions between plants and environment. Although many res...

    Authors: Wenhui Bai, Cheng Li, Wei Li, Hai Wang, Xiaohong Han, Peipei Wang and Li Wang
    Citation: BMC Genomics 2024 25:418
    Content type: Research Published on:

  27. Between 2020 and 2022, eight calves in a Nebraska herd (composite Simmental, Red Angus, Gelbvieh) displayed exercise intolerance during forced activity. In some cases, the calves collapsed and did not recover....

    Authors: Mackenzie C. Batt, Leila G. Venzor, Keri Gardner, Rachel R. Reith, Kelsey A. Roberts, Nicolas J. Herrera, Anna M. Fuller, Gary A. Sullivan, J. Travis Mulliniks, Matthew L. Spangler, Stephanie J. Valberg, David J. Steffen and Jessica L. Petersen
    Citation: BMC Genomics 2024 25:417
    Content type: Research Published on:

  28. Admixture occurs between different ethnic human populations. The global colonization in recent centuries by Europeans led to the most significant admixture in human history. While admixture may enhance genetic...

    Authors: Stephanie Andaluz, Bojin Zhao, Siddharth Sinha, Philip Naderev Panuringan Lagniton, Diogo Alpuim Costa, Xiaofan Ding, Miguel Brito and San Ming Wang
    Citation: BMC Genomics 2024 25:416
    Content type: Research Published on:

  29. Oxygen-induced retinopathy (OIR) animal model is widely used for retinopathy of prematurity (ROP) researches. The purpose of this study was to identify proteins and related pathways of OIR with or without anti...

    Authors: Zhaokai Xu, Yubo Wu, Jianbo Mao, Yiqi Chen, Huan Chen, Shian Zhang, Jiafeng Yu, Xinyi Deng and Lijun Shen
    Citation: BMC Genomics 2024 25:415
    Content type: Research Published on:

  30. Growth rate is a crucial economic trait for farmed animals, but the genetic regulation of this trait is largely unknown in non-model organisms such as shrimp.

    Authors: Xiuli Chen, Min Peng, Chunling Yang, Qiangyong Li, Pengfei Feng, Weilin Zhu, Yongde Zhang, Digang Zeng and Yongzhen Zhao
    Citation: BMC Genomics 2024 25:414
    Content type: Research Published on:

  31. Disulfidptosis is a novel form of programmed cell death induced by high SLC7A11 expression under glucose starvation conditions, unlike other known forms of cell death. However, the roles of disulfidptosis in c...

    Authors: Lei Ren, Jinwen Liu, Qingyuan Lin, Tianyi He, Guankai Huang, Weifeng Wang, Xunhao Zhan, Yu He, Bin Huang and Xiaopeng Mao
    Citation: BMC Genomics 2024 25:413
    Content type: Research Published on:

  32. Solanum aculeatissimum and Solanum torvum belong to the Solanum species, and they are essential plants known for their high resistance to diseases and adverse conditions. They are frequently used as rootstocks fo...

    Authors: Longhao Zhang, Chengqi Yi, Xin Xia, Zheng Jiang, Lihui Du, Shixin Yang and Xu Yang
    Citation: BMC Genomics 2024 25:412
    Content type: Research Published on:

  33. Genomic architecture is a key evolutionary trait for living organisms. Due to multiple complex adaptive and neutral forces which impose evolutionary pressures on genomes, there is a huge variability of genomic...

    Authors: Carles Galià-Camps, Cinta Pegueroles, Xavier Turon, Carlos Carreras and Marta Pascual
    Citation: BMC Genomics 2024 25:410
    Content type: Research Published on:

  34. To evaluate the contribution of germline genetics to regulating the briskness and diversity of T cell responses in CRC, we conducted a genome-wide association study to examine the associations between germline...

    Authors: Stephanie L. Schmit, Ya-Yu Tsai, Joseph D. Bonner, Rebeca Sanz-Pamplona, Amit D. Joshi, Tomotaka Ugai, Sidney S. Lindsey, Marilena Melas, Kevin J. McDonnell, Gregory E. Idos, Christopher P. Walker, Chenxu Qu, W. Martin Kast, Diane M. Da Silva, Jonathan N. Glickman, Andrew T. Chan…
    Citation: BMC Genomics 2024 25:409
    Content type: Research Published on:

  35. Klebsiella pneumoniae, a notorious pathogen for causing nosocomial infections has become a major cause of neonatal septicemia, leading to high morbidity and mortality worldwide. This opportunistic bacterium has ...

    Authors: Sidra Rahmat Ullah, Sidra Irum, Iqra Mahnoor, Humaira Ismatullah, Mariam Mumtaz, Saadia Andleeb, Abdur Rahman and Muhsin Jamal
    Citation: BMC Genomics 2024 25:408
    Content type: Research Published on:

  36. Unraveling the intricate and tightly regulated process of adipogenesis, involving coordinated activation of transcription factors and signaling pathways, is essential for addressing obesity and related metabol...

    Authors: Siriluck Ponsuksili, Puntita Siengdee, Shuaichen Li, Wannapimol Kriangwanich, Michael Oster, Henry Reyer and Klaus Wimmers
    Citation: BMC Genomics 2024 25:407
    Content type: Research Published on:

  37. Graph-based pangenome is gaining more popularity than linear pangenome because it stores more comprehensive information of variations. However, traditional linear genome browser has its own advantages, especia...

    Authors: Mingwei Liu, Fan Zhang, Huimin Lu, Hongzhang Xue, Xiaorui Dong, Zhikang Li, Jianlong Xu, Wensheng Wang and Chaochun Wei
    Citation: BMC Genomics 2024 25:405
    Content type: Research Published on:

  38. Transposable elements (TEs) are a major force in the evolution of plant genomes. Differences in the transposition activities and landscapes of TEs can vary substantially, even in closely related species. Inter...

    Authors: Pavel Merkulov, Melania Serganova, Georgy Petrov, Vladislav Mityukov and Ilya Kirov
    Citation: BMC Genomics 2024 25:404
    Content type: Research Published on:

  39. Recent studies have found a link between deep vein thrombosis and inflammatory reactions. N6-methyladenosine (m6A), a crucial element in immunological regulation, is believed to contribute to the pathophysiolo...

    Authors: Deshuai Zhang, Wenxia Fu, Shiwei Zhu, Yitong Pan and Ruogu Li
    Citation: BMC Genomics 2024 25:403
    Content type: Research Published on:

  41. Most of the important biological mechanisms and functions of transmembrane proteins (TMPs) are realized through their interactions with non-transmembrane proteins(nonTMPs). The interactions between TMPs and no...

    Authors: Chang Lu, Jiuhong Jiang, Qiufen Chen, Huanhuan Liu, Xingda Ju and Han Wang
    Citation: BMC Genomics 2024 25(Suppl 1):401
    Content type: Research Published on:

    This article is part of a Supplement: Volume 25 Supplement 1

  42. Skeletal muscle is composed of muscle fibers with different physiological characteristics, which plays an important role in regulating skeletal muscle metabolism, movement and body homeostasis. The type of ske...

    Authors: Chenchen Li, Yinuo Wang, Xiaohui Sun, Jinjin Yang, Yingchun Ren, Jinrui Jia, Gongshe Yang, Mingzhi Liao, Jianjun Jin and Xin’e Shi
    Citation: BMC Genomics 2024 25:400
    Content type: Research Published on:

  43. Endophytic bacteria possess a range of unique characteristics that enable them to successfully interact with their host and survive in adverse environments. This study employed in silico analysis to identify gene...

    Authors: Pfariso Maumela, Adivhaho Khwathisi, Ntakadzeni Edwin Madala and Mahloro Hope Serepa-Dlamini
    Citation: BMC Genomics 2024 25:399
    Content type: Research Published on:

  44. Pinellia ternata (Thunb.) Briet., a valuable herb native to China, is susceptible to the “sprout tumble” phenomenon because of high temperatures, resulting in a significant yield reduction. However, the molecular...

    Authors: Chen Bo, Mengmeng Liu, Qian You, Xiao Liu, Yanfang Zhu, Yongbo Duan, Dexin Wang, Tao Xue and Jianping Xue
    Citation: BMC Genomics 2024 25:398
    Content type: Research Published on:

  47. Accurately deciphering clonal copy number substructure can provide insights into the evolutionary mechanism of cancer, and clustering single-cell copy number profiles has become an effective means to unmask in...

    Authors: Ruixiang Li, Fangyuan Shi, Lijuan Song and Zhenhua Yu
    Citation: BMC Genomics 2024 25:393
    Content type: Research Published on:

  48. The pituitary directly regulates the reproductive process through follicle-stimulating hormone (FSH) and luteinizing hormone (LH). Transcriptomic research on the pituitaries of ewes with different FecB (fecundity...

    Authors: Jianqi Yang, Jishun Tang, Xiaoyun He, Ran Di, Xiaosheng Zhang, Jinlong Zhang, Xiaofei Guo, Wenping Hu and Mingxing Chu
    Citation: BMC Genomics 2024 25:392
    Content type: Research Published on:

  49. Developmental delay (DD), or intellectual disability (ID) is a very large group of early onset disorders that affects 1–2% of children worldwide, which have diverse genetic causes that should be identified. Ge...

    Authors: Heqian Ma, Lina Zhu, Xiao Yang, Meng Ao, Shunxiang Zhang, Meizhen Guo, Xuelin Dai, Xiuwei Ma and Xiaoying Zhang
    Citation: BMC Genomics 2024 25:391
    Content type: Research Published on:

  50. Medicinal plants are rich sources for treating various diseases due their bioactive secondary metabolites. Fenugreek (Trigonella foenum-graecum) is one of the medicinal plants traditionally used in human nutritio...

    Authors: Sara Lamei Javan, Arman Beyraghdar Kashkooli, AbdolAli Shojaeiyan and Sina Majidian
    Citation: BMC Genomics 2024 25:390
    Content type: Research Published on:

Featured videos

View featured videos from across the BMC-series journals

Submit manuscript

Annual Journal Metrics

  • 2022 Citation Impact
    4.4 - 2-year Impact Factor
    4.7 - 5-year Impact Factor
    1.189 - SNIP (Source Normalized Impact per Paper)
    1.107 - SJR (SCImago Journal Rank)

    2023 Speed
    23 days submission to first editorial decision for all manuscripts (Median)
    137 days submission to accept (Median)

    2023 Usage
    7,167,242 downloads
    4,454 Altmetric mentions

Follow

Sign up for article alerts and news from this journal

BMC Genomics

ISSN: 1471-2164

Contact us