Cummings CA, Brinig MM, Lepp PW, van de PS, Relman DA: Bordetella species are distinguished by patterns of substantial gene loss and host adaptation. J Bacteriol. 2004, 186: 1484-1492. 10.1128/JB.186.5.1484-1492.2004.
Article
PubMed Central
PubMed
Google Scholar
Zee van der A, Mooi F, Van Embden J, Musser J: Molecular evolution and host adaptation of Bordetella spp.: phylogenetic analysis using multilocus enzyme electrophoresis and typing with three insertion sequences. J Bacteriol. 1997, 179: 6609-6617.
PubMed Central
PubMed
Google Scholar
Heininger U, Stehr K, Schmitt-Grohe S, Lorenz C, Rost R, Christenson PD: Clinical characteristics of illness caused by Bordetella parapertussis compared with illness caused by Bordetella pertussis. Pediatr Infect Dis J. 1994, 13: 306-309.
Article
PubMed
Google Scholar
Gueirard P, Weber C, Le Coustumier A, Guiso N: Human Bordetella bronchiseptica infection related to contact with infected animals: persistence of bacteria in host. J Clin Microbiol. 1995, 33: 2002-2006.
PubMed Central
PubMed
Google Scholar
Diavatopoulos DA, Cummings CA, Schouls LM, Brinig MM, Relman DA, Mooi FR: Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica. PLoS Pathog. 2005, 1: e45-10.1371/journal.ppat.0010045.
Article
PubMed Central
PubMed
Google Scholar
Zee van der A, Groenendijk H, Peeters M, Mooi FR: The differentiation of Bordetella parapertussis and Bordetella bronchiseptica from humans and animals as determined by DNA polymorphism mediated by two different insertion sequence elements suggests their phylogenetic relationship. Int J Syst Bacteriol. 1996, 46: 640-647.
Article
PubMed
Google Scholar
Mattoo S, Cherry JD: Molecular pathogenesis, epidemiology, and clinical manifestations of respiratory infections due to Bordetella pertussis and other Bordetella subspecies 1. Clin Microbiol Rev. 2005, 18: 326-382. 10.1128/CMR.18.2.326-382.2005.
Article
PubMed Central
PubMed
Google Scholar
He Q, Mertsola J: Factors contributing to pertussis resurgence 10. Future Microbiol. 2008, 3: 329-339. 10.2217/17460913.3.3.329.
Article
PubMed
Google Scholar
Crowcroft NS, Pebody RG: Recent developments in pertussis. Lancet. 2006, 367: 1926-1936. 10.1016/S0140-6736(06)68848-X.
Article
PubMed
Google Scholar
de Melker HE, Schellekens JF, Neppelenbroek SE, Mooi FR, Rumke HC, Conyn-van Spaendonck MA: Reemergence of pertussis in the highly vaccinated population of the Netherlands: observations on surveillance data. Emerg Infect Dis. 2000, 6: 348-357. 10.3201/eid0604.000404.
Article
PubMed Central
PubMed
Google Scholar
Guris D, Strebel PM, Bardenheier B, Brennan M, Tachdjian R, Finch E: Changing epidemiology of pertussis in the United States: increasing reported incidence among adolescents and adults, 1990-1996. Clin Infect Dis. 1999, 28: 1230-1237. 10.1086/514776.
Article
PubMed
Google Scholar
Mooi FR, Van Loo IH, King AJ: Adaptation of Bordetella pertussis to vaccination: a cause for its reemergence?. Emerg Infect Dis. 2001, 7: 526-528. 10.3201/eid0703.010308.
Article
PubMed Central
PubMed
Google Scholar
Mooi FR, van Oirschot H, Heuvelman K, Heide van der HG, Gaastra W, Willems RJ: Polymorphism in the Bordetella pertussis virulence factors P.69/pertactin and pertussis toxin in The Netherlands: temporal trends and evidence for vaccine-driven evolution. Infect Immun. 1998, 66: 670-675.
PubMed Central
PubMed
Google Scholar
Mooi FR, He Q, van Oirschot H, Mertsola J: Variation in the Bordetella pertussis virulence factors pertussis toxin and pertactin in vaccine strains and clinical isolates in Finland. Infect Immun. 1999, 67: 3133-3134.
PubMed Central
PubMed
Google Scholar
Mastrantonio P, Spigaglia P, van Oirschot H, Heide van der HG, Heuvelman K, Stefanelli P: Antigenic variants in Bordetella pertussis strains isolated from vaccinated and unvaccinated children. Microbiology. 1999, 145 (Pt 8): 2069-2075. 10.1099/13500872-145-8-2069.
Article
PubMed
Google Scholar
Cassiday P, Sanden G, Heuvelman K, Mooi F, Bisgard KM, Popovic T: Polymorphism in Bordetella pertussis pertactin and pertussis toxin virulence factors in the United States, 1935-1999. J Infect Dis. 2000, 182: 1402-1408. 10.1086/315881.
Article
PubMed
Google Scholar
Berbers GA, de Greeff SC, Mooi FR: Improving pertussis vaccination 1. Hum Vaccin. 2009, 5: 497-503.
Article
PubMed
Google Scholar
Mooi FR, Van Loo IH, van Gent M, He Q, Bart MJ, Heuvelman KJ: Bordetella pertussis strains with increased toxin production associated with pertussis resurgence 2. Emerg Infect Dis. 2009, 15: 1206-1213. 10.3201/eid1508.081511.
Article
PubMed Central
PubMed
Google Scholar
Miller E, Vurdien JE, White JM: The epidemiology of pertussis in England and Wales. Commun Dis Rep CDR Rev. 1992, 2: R152-R154.
PubMed
Google Scholar
Hallander HO, Gustafsson L, Ljungman M, Storsaeter J: Pertussis antitoxin decay after vaccination with DTPa. Response to a first booster dose 3 1/2-6 1/2 years after the third vaccine dose 11. Vaccine. 2005, 23: 5359-5364. 10.1016/j.vaccine.2005.06.009.
Article
PubMed
Google Scholar
van Gent M, de Greeff SC, Heide van der HG, Mooi FR: An investigation into the cause of the 1983 whooping cough epidemic in the Netherlands 1. Vaccine. 2009, 27: 1898-1903. 10.1016/j.vaccine.2009.01.111.
Article
PubMed
Google Scholar
Gustafsson L, Hessel L, Storsaeter J, Olin P: Long-term follow-up of Swedish children vaccinated with acellular pertussis vaccines at 3, 5, and 12 months of age indicates the need for a booster dose at 5 to 7 years of age 1. Pediatrics. 2006, 118: 978-984. 10.1542/peds.2005-2746.
Article
PubMed
Google Scholar
Hallander HO, Advani A, Donnelly D, Gustafsson L, Carlsson RM: Shifts of Bordetella pertussis variants in Sweden from 1970 to 2003, during three periods marked by different vaccination programs 13. J Clin Microbiol. 2005, 43: 2856-2865. 10.1128/JCM.43.6.2856-2865.2005.
Article
PubMed Central
PubMed
Google Scholar
Sato H, Sato Y: Experience with diphtheria toxoid-tetanus toxoid-acellular pertussis vaccine in Japan 5. Clin Infect Dis. 1999, 28 (Suppl 2): S124-S130. 10.1086/515063.
Article
PubMed
Google Scholar
Watanabe M, Nagai M: Acellular pertussis vaccines in Japan: past, present and future 1. Expert Rev Vaccines. 2005, 4: 173-184. 10.1586/14760584.4.2.173.
Article
PubMed
Google Scholar
Quinn HE, McIntyre PB: Pertussis epidemiology in Australia over the decade 1995-2005--trends by region and age group 4. Commun Dis Intell. 2007, 31: 205-215.
Google Scholar
Preziosi MP, Yam A, Wassilak SG, Chabirand L, Simaga A, Ndiaye M: Epidemiology of pertussis in a West African community before and after introduction of a widespread vaccination program 1. Am J Epidemiol. 2002, 155: 891-896. 10.1093/aje/155.10.891.
Article
PubMed
Google Scholar
Patel S, Schoone G, Ligthart GS, Gikken H, Preston NW: Machakos project studies. Agents affecting health of mother and child in a rural area of Kenya. V. Pertussis sentypes in Kenyan children 1974--1975 10. Trop Geogr Med. 1978, 30: 141-146.
PubMed
Google Scholar
Galazka A: Control of pertussis in the world 6. World Health Stat Q. 1992, 45: 238-247.
PubMed
Google Scholar
Caro V, Njamkepo E, Van Amersfoorth SC, Mooi FR, Advani A, Hallander HO: Pulsed-field gel electrophoresis analysis of Bordetella pertussis populations in various European countries with different vaccine policies. Microbes Infect. 2005, 7: 976-982. 10.1016/j.micinf.2005.04.005.
Article
PubMed
Google Scholar
Elomaa A, Advani A, Donnelly D, Antila M, Mertsola J, Hallander H: Strain variation among Bordetella pertussis isolates in finland, where the whole-cell pertussis vaccine has been used for 50 years 9. J Clin Microbiol. 2005, 43: 3681-3687. 10.1128/JCM.43.8.3681-3687.2005.
Article
PubMed Central
PubMed
Google Scholar
Hallander H, Advani A, Riffelmann M, Von Konig CH, Caro V, Guiso N: Bordetella pertussis strains circulating in Europe in 1999 to 2004 as determined by pulsed-field gel electrophoresis 3. J Clin Microbiol. 2007, 45: 3257-3262. 10.1128/JCM.00864-07.
Article
PubMed Central
PubMed
Google Scholar
Kourova N, Caro V, Weber C, Thiberge S, Chuprinina R, Tseneva G: Comparison of the Bordetella pertussis and Bordetella parapertussis isolates circulating in Saint Petersburg between 1998 and 2000 with Russian vaccine strains 1. J Clin Microbiol. 2003, 41: 3706-3711. 10.1128/JCM.41.8.3706-3711.2003.
Article
PubMed Central
PubMed
Google Scholar
Lin YC, Yao SM, Yan JJ, Chen YY, Hsiao MJ, Chou CY: Molecular epidemiology of Bordetella pertussis in Taiwan, 1993-2004: suggests one possible explanation for the outbreak of pertussis in 1997 3. Microbes Infect. 2006, 8: 2082-2087. 10.1016/j.micinf.2006.03.019.
Article
PubMed
Google Scholar
Van Loo IH, Heide van der HG, Nagelkerke NJ, Verhoef J, Mooi FR: Temporal trends in the population structure of Bordetella pertussis during 1949-1996 in a highly vaccinated population. J Infect Dis. 1999, 179: 915-923. 10.1086/314690.
Article
PubMed
Google Scholar
Van Loo IH, Mooi FR: Changes in the Dutch Bordetella pertussis population in the first 20 years after the introduction of whole-cell vaccines. Microbiology. 2002, 148: 2011-2018.
Article
PubMed
Google Scholar
Weber C, Boursaux-Eude C, Coralie G, Caro V, Guiso N: Polymorphism of Bordetella pertussis isolates circulating for the last 10 years in France, where a single effective whole-cell vaccine has been used for more than 30 years 3. J Clin Microbiol. 2001, 39: 4396-4403. 10.1128/JCM.39.12.4396-4403.2001.
Article
PubMed Central
PubMed
Google Scholar
Champion OL, Gaunt MW, Gundogdu O, Elmi A, Witney AA, Hinds J: Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source 6. Proc Natl Acad Sci USA. 2005, 102: 16043-16048. 10.1073/pnas.0503252102.
Article
PubMed Central
PubMed
Google Scholar
Dorrell N, Hinchliffe SJ, Wren BW: Comparative phylogenomics of pathogenic bacteria by microarray analysis 2. Curr Opin Microbiol. 2005, 8: 620-626. 10.1016/j.mib.2005.08.012.
Article
PubMed
Google Scholar
Han H, Wong HC, Kan B, Guo Z, Zeng X, Yin S: Genome plasticity of Vibrio parahaemolyticus: microevolution of the 'pandemic group' 3. BMC Genomics. 2008, 9: 570-10.1186/1471-2164-9-570.
Article
PubMed Central
PubMed
Google Scholar
Zhang Y, Laing C, Steele M, Ziebell K, Johnson R, Benson AK: Genome evolution in major Escherichia coli O157:H7 lineages 1. BMC Genomics. 2007, 8: 121-10.1186/1471-2164-8-121.
Article
PubMed Central
PubMed
Google Scholar
Brinig MM, Cummings CA, Sanden GN, Stefanelli P, Lawrence A, Relman DA: Significant gene order and expression differences in Bordetella pertussis despite limited gene content variation. J Bacteriol. 2006, 188: 2375-2382. 10.1128/JB.188.7.2375-2382.2006.
Article
PubMed Central
PubMed
Google Scholar
Caro V, Hot D, Guigon G, Hubans C, Arrive M, Soubigou G: Temporal analysis of French Bordetella pertussis isolates by comparative whole-genome hybridization. Microbes Infect. 2006, 8: 2228-2235. 10.1016/j.micinf.2006.04.014.
Article
PubMed
Google Scholar
Heikkinen E, Kallonen T, Saarinen L, Sara R, King AJ, Mooi FR: Comparative Genomics of Bordetella pertussis Reveals Progressive Gene Loss in Finnish Strains. PLoS ONE. 2007, 2: e904-10.1371/journal.pone.0000904.
Article
PubMed Central
PubMed
Google Scholar
King AJ, van Gorkom T, Pennings JL, Heide van der HG, He Q, Diavatopoulos D: Comparative genomic profiling of Dutch clinical Bordetella pertussis isolates using DNA microarrays: identification of genes absent from epidemic strains 2. BMC Genomics. 2008, 9: 311-10.1186/1471-2164-9-311.
Article
PubMed Central
PubMed
Google Scholar
Advani A, Donnelly D, Hallander H: Reference system for characterization of Bordetella pertussis pulsed-field gel electrophoresis profiles 16. J Clin Microbiol. 2004, 42: 2890-2897. 10.1128/JCM.42.7.2890-2897.2004.
Article
PubMed Central
PubMed
Google Scholar
Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet. 2003, 35: 32-40. 10.1038/ng1227.
Article
PubMed
Google Scholar
Bouchez V, Caro V, Levillain E, Guigon G, Guiso N: Genomic content of Bordetella pertussis clinical isolates circulating in areas of intensive children vaccination 1. PLoS ONE. 2008, 3: e2437-10.1371/journal.pone.0002437.
Article
PubMed Central
PubMed
Google Scholar
Caro V, Bouchez V, Guiso N: Is the Sequenced Bordetella pertussis strain Tohama I representative of the species? 2. J Clin Microbiol. 2008, 46: 2125-2128. 10.1128/JCM.02484-07.
Article
PubMed Central
PubMed
Google Scholar
Gaudriault S, Pages S, Lanois A, Laroui C, Teyssier C, Jumas-Bilak E: Plastic architecture of bacterial genome revealed by comparative genomics of Photorhabdus variants 1. Genome Biol. 2008, 9: R117-10.1186/gb-2008-9-7-r117.
Article
PubMed Central
PubMed
Google Scholar
Treangen TJ, Abraham AL, Touchon M, Rocha EP: Genesis, effects and fates of repeats in prokaryotic genomes 2. FEMS Microbiol Rev. 2009, 33: 539-571. 10.1111/j.1574-6976.2009.00169.x.
Article
PubMed
Google Scholar
Pallen MJ, Wren BW: Bacterial pathogenomics 1. Nature. 2007, 449: 835-842. 10.1038/nature06248.
Article
PubMed
Google Scholar
Andersson DI: Shrinking Bacterial Genomes. Microbe. 2008, 3: 124-130.
Google Scholar
Day WA, Fernandez RE, Maurelli AT: Pathoadaptive mutations that enhance virulence: genetic organization of the cadA regions of Shigella spp 2. Infect Immun. 2001, 69: 7471-7480. 10.1128/IAI.69.12.7471-7480.2001.
Article
PubMed Central
PubMed
Google Scholar
Lawrence JG: Common themes in the genome strategies of pathogens. Curr Opin Genet Dev. 2005, 15: 584-588. 10.1016/j.gde.2005.09.007.
Article
PubMed
Google Scholar
de Greeff SC, Mooi FR, Schellekens JF, de Melker HE: Impact of acellular pertussis preschool booster vaccination on disease burden of pertussis in The Netherlands 5. Pediatr Infect Dis J. 2008, 27: 218-223. 10.1097/INF.0b013e318161a2b9.
Article
PubMed
Google Scholar
Kallonen T, He Q: Bordetella pertussis strain variation and evolution postvaccination 1. Expert Rev Vaccines. 2009, 8: 863-875. 10.1586/erv.09.46.
Article
PubMed
Google Scholar
Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N: TM4: a free, open-source system for microarray data management and analysis. Biotechniques. 2003, 34: 374-378.
PubMed
Google Scholar